RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CXorf40BQ96DE9 158 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GANQ9H2C0 597 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CEP72Q9P209 647 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 DIS3Q9Y2L1 958 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 NOP16Q9Y3C1 178 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PSAT1Q9Y617 370 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PMF1-BGLAPU3KQ54 211 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 H3BNH8 94 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 M0QYT0 321 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SRP72O76094 671 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FARP2O94887 1054 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PGAM2P15259 253 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GADD45AP24522 165 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SERPINB8P50452 374 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TUBB2AQ13885 445 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 DPYSQ14117 519 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TYSND1Q2T9J0 566 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM270Q6UE05 265 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GPR135Q8IZ08 494 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SLC20A1Q8WUM9 679 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TSEN15Q8WW01 171 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 MKL1Q969V6 931 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 COQ8BQ96D53 544 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 HTATIP2Q9BUP3 242 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TUBB2BQ9BVA1 445 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM120AQ9BXJ8 343 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 RMND5AQ9H871 391 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 LIN7CQ9NUP9 197 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FANCLQ9NW38 375 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 DPP3Q9NY33 737 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 STK39Q9UEW8 545 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 MAP3K1Q13233 1512 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ADGRA3Q8IWK6 1321 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ADGRF5Q8IZF2 1346 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TIAM1Q13009 1591 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ABCC5O15440 1437 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CYP2D7A0A087X1C5 515 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 A0A0G2JMP0 313 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GNB5O14775 395 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CD3EAPO15446 510 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 F2RP25116 425 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 UGT1A5P35504 534 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 NDUFA8P51970 172 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TAB1Q15750 504 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 UGCGQ16739 394 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TIGD6Q17RP2 521 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SETMARQ53H47 684 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ZDHHC20Q5W0Z9 365 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 STEAP3Q658P3 488 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF709Q8N972 641 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 OR4M2Q8NGB6 313 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PLBD2Q8NHP8 589 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FNIP1Q8TF40 1166 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SPTLC3Q9NUV7 552 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 AHSPQ9NZD4 102 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHB3Q9Y5E6 796 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ADGRG1Q9Y653 693 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PCF11O94913 1555 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 MYMKA6NI61 221 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CAPN14A8MX76 684 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 IGF2BP3O00425 579 aaKnown RBP eCLIP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 VILLO15195 856 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 VAPBO95292 243 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 EIF4EP06730 217 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 HNRNPLP14866 589 aaKnown RBP eCLIP4.72□□□□□ -1.652e-7■■■□□ 17.7
SCN1A-202ENST00000375405 GCFC2P16383 781 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TPH1P17752 444 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 CCNCP24863 283 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TLX1P31314 330 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 RPL13AP40429 203 aaKnown RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PLP2Q04941 152 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ME3Q16798 604 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PFKFB3Q16875 520 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FAXCQ5TGI0 409 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ATG14Q6ZNE5 492 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 HFE2Q6ZVN8 426 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 G2E3Q7L622 706 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TRAPPC6BQ86SZ2 158 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 C2orf73Q8N5S3 287 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 ARL5BQ96KC2 179 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FMO2Q99518 471 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 PXMP2Q9NR77 195 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TMEM39AQ9NV64 488 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 IFT80Q9P2H3 777 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 GABBR1Q9UBS5 961 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 UBA2Q9UBT2 640 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-202ENST00000375405 FBXO40Q9UH90 709 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 TSPOAP1O95153 1857 aa4.72□□□□□ -1.65
SCN1A-202ENST00000375405 SRRM3A6NNA2 597 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-202ENST00000375405 CLCA1A8K7I4 914 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 SLC28A1O00337 649 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 O00370 1275 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 XKRYO14609 159 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 FTCDO95954 541 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 SERPINF2P08697 491 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 CYP11B1P15538 503 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 PSMB9P28065 219 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 EPHB3P54753 998 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 TMBIM6P55061 237 aa4.71□□□□□ -1.65
SCN1A-202ENST00000375405 BATFQ16520 125 aa4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms