RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 LRRC42Q9Y546 428 aa14.69□□□□□ -0.06
HMGA1-203ENST00000374116 ZNF638Q14966 1978 aaKnown RBP14.69□□□□□ -0.06
HMGA1-203ENST00000374116 TMEM120BA0PK00 339 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 HHLA1C9JL84 531 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 PAPSS1O43252 624 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 IFNB1P01574 187 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 RHOP08100 348 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 PDGFRAP16234 1089 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 HMGA1P17096 107 aaKnown RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 PGFP49763 221 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 SLC5A3P53794 718 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 RPL10AP62906 217 aaKnown RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 SLC6A3Q01959 620 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 SH3PXD2AQ5TCZ1 1133 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 DENND5BQ6ZUT9 1274 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 ARCQ7LC44 396 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 PIGZQ86VD9 579 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 TDRPQ86YL5 185 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 ZDHHC17Q8IUH5 632 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 PPIL6Q8IXY8 311 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 RSAD2Q8WXG1 361 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 ING5Q8WYH8 240 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 HSPH1Q92598 858 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 PRCCQ92733 491 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 NAF1Q96HR8 494 aaKnown RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 OSBPL1AQ9BXW6 950 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 YIPF3Q9GZM5 350 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 CSNK1G1Q9HCP0 422 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 CYLDQ9NQC7 956 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 EURLQ9NYK6 297 aa14.68□□□□□ -0.06
HMGA1-203ENST00000374116 USP15Q9Y4E8 981 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 FARP1Q9Y4F1 1045 aaPredicted RBP14.68□□□□□ -0.06
HMGA1-203ENST00000374116 SNX3O60493 162 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 CD48P09326 243 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 HNRNPA1P09651 372 aaKnown RBP eCLIP14.67□□□□□ -0.06
HMGA1-203ENST00000374116 HOXB8P17481 243 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-203ENST00000374116 SCNN1AP37088 669 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 BCAT1P54687 386 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 KCNJ2P63252 427 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 BST2Q10589 180 aaKnown RBP14.67□□□□□ -0.06
HMGA1-203ENST00000374116 TAF5Q15542 800 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 CCDC14Q49A88 953 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 THEMIS2Q5TEJ8 643 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 GPR149Q86SP6 731 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 ELMOD1Q8N336 334 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 ITFG1Q8TB96 612 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 PSMG2Q969U7 264 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 C8orf48Q96LL4 319 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 TSC22D3Q99576 134 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 MAK16Q9BXY0 300 aaKnown RBP14.67□□□□□ -0.06
HMGA1-203ENST00000374116 DNAI2Q9GZS0 605 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 POMKQ9H5K3 350 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 PAPOLBQ9NRJ5 636 aaKnown RBP14.67□□□□□ -0.06
HMGA1-203ENST00000374116 HSFX1Q9UBD0 423 aa14.67□□□□□ -0.06
HMGA1-203ENST00000374116 SAE1Q9UBE0 346 aaPredicted RBP14.67□□□□□ -0.06
HMGA1-203ENST00000374116 EXOC1LA0A1B0GW35 172 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 A0A1W2PRU2 124 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 TNFRSF10BO14763 440 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 MCF2LO15068 1137 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 PRPSAP2O60256 369 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 XYLBO75191 536 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 C1RP00736 705 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 LCP1P13796 627 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 BRAFP15056 766 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 HOXA9P31269 272 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 EIF3EP60228 445 aaKnown RBP14.66□□□□□ -0.06
HMGA1-203ENST00000374116 TFDP2Q14188 446 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 CBX2Q14781 532 aaPredicted RBP14.66□□□□□ -0.06
HMGA1-203ENST00000374116 VEPH1Q14D04 833 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 PABPC1LQ4VXU2 614 aaKnown RBP14.66□□□□□ -0.06
HMGA1-203ENST00000374116 STXBP5Q5T5C0 1151 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 CES5AQ6NT32 575 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 ELMSAN1Q6PJG2 1045 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 POTEHQ6S545 545 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 LRRC34Q8IZ02 419 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 CYP4X1Q8N118 509 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 NUP93Q8N1F7 819 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 CLEC4CQ8WTT0 213 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 DYDC1Q8WWB3 177 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 CALN1Q9BXU9 219 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 LRRC3Q9BY71 257 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 ECT2Q9H8V3 914 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 KCNK9Q9NPC2 374 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 MAFFQ9ULX9 164 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 A0A0C4DFX4 3053 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 TTC36A6NLP5 189 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 DLL1O00548 723 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 MBTPS2O43462 519 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 UBOX5O94941 541 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 IL9P15248 144 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 DESP17661 470 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 PTPN2P17706 415 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 GNAZP19086 355 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 GABRR2P28476 465 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 ARL4CP56559 192 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 CYP4F8P98187 520 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 ATP11AP98196 1134 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 PDK2Q15119 407 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 HIF1AQ16665 826 aa14.66□□□□□ -0.06
HMGA1-203ENST00000374116 RAB6CQ53S08 254 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms