RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RIN1Q13671 783 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 CAMK1Q14012 370 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 EEF1A1P5Q5VTE0 462 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ATG16L1Q676U5 607 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 KIAA2013Q8IYS2 634 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 STK40Q8N2I9 435 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 C8orf58Q8NAV2 365 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 OR2W6PQ8NHA6 318 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 RNASE11Q8TAA1 199 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 NELFBQ8WX92 580 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 TIMD4Q96H15 378 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 EBNA1BP2Q99848 306 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 SLC2A11Q9BYW1 496 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 TRIM15Q9C019 465 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 FAM107BQ9H098 131 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ACTR5Q9H9F9 607 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 TMPRSS4Q9NRS4 437 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ATAD3AQ9NVI7 634 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 DDX43Q9NXZ2 648 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 UBA2Q9UBT2 640 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 ACAD8Q9UKU7 415 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 POLHQ9Y253 713 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 PRDM15P57071 1507 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 TMEM221A6NGB7 291 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 H0YC42 278 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 M0R296 226 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 SGK1O00141 431 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 MSH4O15457 936 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 PEX1O43933 1283 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 SOAT2O75908 522 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 TJP3O95049 919 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 TROVE2P10155 538 aaKnown RBP eCLIP4.18□□□□□ -1.74
USH2A-202ENST00000366942 CHRM3P20309 590 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 STIP1P31948 543 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 ACTR1BP42025 376 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 SEC13P55735 322 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 EEFSECP57772 596 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 SLFN5Q08AF3 891 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 KCNA1Q09470 495 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 NR0B2Q15466 257 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 AMHR2Q16671 573 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 DACT2Q5SW24 774 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ZBTB8BQ8NAP8 495 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 KCNV2Q8TDN2 545 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 COG1Q8WTW3 980 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 MAML1Q92585 1016 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ZDHHC16Q969W1 377 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 PRR11Q96HE9 360 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 ZNF668Q96K58 619 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 CLIC6Q96NY7 704 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 LENG8Q96PV6 779 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 TEFMQ96QE5 360 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 RBBP8Q99708 897 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 GORASP1Q9BQQ3 440 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 RACGAP1Q9H0H5 632 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 PCIF1Q9H4Z3 704 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ZDHHC6Q9H6R6 413 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 DYNLRB1Q9NP97 96 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 PDGFCQ9NRA1 345 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 CDH9Q9ULB4 789 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ANKDD1BA6NHY2 528 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 H0YJX3 145 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 SMAPO00193 183 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 MATN2O00339 956 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 DDX3YO15523 660 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 CYP7B1O75881 506 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 DLGAP3O95886 979 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 CRYABP02511 175 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 ZNF286BP0CG31 522 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ATF2P15336 505 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 PLCG1P19174 1290 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 EN2P19622 333 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 TARSP26639 723 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 PBLDP30039 288 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 SREBF1P36956 1147 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 CLCN3P51790 818 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 TCEAL6Q6IPX3 200 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 KCTD18Q6PI47 426 aaPredicted RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 ARL9Q6T311 187 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ALYREFQ86V81 257 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 PARGQ86W56 976 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 LRRC49Q8IUZ0 686 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 UBR7Q8N806 425 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 TMEM178AQ8NBL3 297 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 AGBL5Q8NDL9 886 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 SMARCD2Q92925 531 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 GFM2Q969S9 779 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 DYDC2Q96IM9 177 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 SERAC1Q96JX3 654 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 HEMGNQ9BXL5 484 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 RASSF4Q9H2L5 321 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 EPB41L1Q9H4G0 881 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ABCC13Q9NSE7 274 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 MPP6Q9NZW5 540 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 ZC3H7BQ9UGR2 993 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 DIP2CQ9Y2E4 1556 aa4.18□□□□□ -1.74
USH2A-202ENST00000366942 RIMS1Q86UR5 1692 aaKnown RBP4.18□□□□□ -1.74
USH2A-202ENST00000366942 NTSR2O95665 410 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 EYA4O95677 639 aa4.17□□□□□ -1.74
USH2A-202ENST00000366942 ITIH2P19823 946 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms