RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 APBA2Q99767 749 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 MLPHQ9BV36 600 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-202ENST00000352886 CASS4Q9NQ75 786 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 SNX15Q9NRS6 342 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 LRIG2O94898 1065 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 F7P08709 466 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-202ENST00000352886 PCSK1P29120 753 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 GALNT2Q10471 571 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 GPR162Q16538 588 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 INSCQ1MX18 579 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 INTS6LQ5JSJ4 861 aaKnown RBP22.28■■□□□ 1.16
SHMT1-202ENST00000352886 GNASQ5JWF2 1037 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 DCLK2Q8N568 766 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 AGAP2Q99490 1192 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 RBBP8Q99708 897 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 APOL2Q9BQE5 337 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 BRD8Q9H0E9 1235 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 MMADHCQ9H3L0 296 aaPredicted RBP22.28■■□□□ 1.16
SHMT1-202ENST00000352886 DONSONQ9NYP3 566 aa22.28■■□□□ 1.16
SHMT1-202ENST00000352886 ZCWPW2A0A1B0GU75 182 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 MTSS1O43312 755 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 ATP9BO43861 1147 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 USP1O94782 785 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CHRNA1P02708 482 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 SERPINA6P08185 405 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 AKR1A1P14550 325 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 NFKB1P19838 968 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 SERPINB6P35237 376 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CXCR3P49682 368 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 KDSRQ06136 332 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 UPP1Q16831 310 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 PAN2Q504Q3 1202 aaKnown RBP22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CERCAMQ5T4B2 595 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 GDF6Q6KF10 455 aaPredicted RBP22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CXCL17Q6UXB2 119 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 STRA8Q7Z7C7 330 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 FBXO27Q8NI29 283 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 MFSD3Q96ES6 412 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 RTP3Q9BQQ7 232 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CCDC106Q9BWC9 280 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 ZNF358Q9NW07 568 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 SERPINE1P05121 402 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 TAF11Q15544 211 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 ACSBG2Q5FVE4 666 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 RSPH3Q86UC2 560 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 AZIN2Q96A70 460 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CSNK1G1Q9HCP0 422 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 CHST12Q9NRB3 414 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 COPG2Q9UBF2 871 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 TAGLN3Q9UI15 199 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 TRHDEQ9UKU6 1024 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 GIT1Q9Y2X7 761 aa22.27■■□□□ 1.16
SHMT1-202ENST00000352886 SCN10AQ9Y5Y9 1956 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 ERI2A8K979 691 aaKnown RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 PGM1P36871 562 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 PTDSS1P48651 473 aaKnown RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 ANKRD20A4Q4UJ75 823 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 ITPRIPL1Q6GPH6 555 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 TAC4Q86UU9 113 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 TMPRSS6Q8IU80 811 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 WDR60Q8WVS4 1066 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 CELF6Q96J87 481 aaKnown RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 SIKE1Q9BRV8 207 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 SENP6Q9GZR1 1112 aaPredicted RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 ARHGAP42A6NI28 874 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 PRR5-ARHGAP8B1AHC4 643 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 ATP5BP06576 529 aaKnown RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 BDNFP23560 247 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 SPRP35270 261 aaPredicted RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 LIMK2P53671 638 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 ARHGAP8P85298 464 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 UBAP2LQ14157 1087 aaKnown RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 HSP90AA5PQ58FG0 334 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 FSTL4Q6MZW2 842 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 RBM15BQ8NDT2 890 aaKnown RBP22.26■■□□□ 1.15
SHMT1-202ENST00000352886 RNF34Q969K3 372 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 UBP1Q9NZI7 540 aa22.26■■□□□ 1.15
SHMT1-202ENST00000352886 CLGNO14967 610 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 RPL9P32969 192 aaKnown RBP22.25■■□□□ 1.15
SHMT1-202ENST00000352886 HUNKP57058 714 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ATG14Q6ZNE5 492 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ARHGAP24Q8N264 748 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 MTG1Q9BT17 334 aaPredicted RBP22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ADAM28Q9UKQ2 775 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 CEP350Q5VT06 3117 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 DUSP11O75319 330 aaKnown RBP22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ODC1P11926 461 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ABCG1P45844 678 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 SERPINB8P50452 374 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 C17orf99Q6UX52 265 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 KIRREL3Q8IZU9 778 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 PPP4R1Q8TF05 950 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ISL2Q96A47 359 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 ANKRD27Q96NW4 1050 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 SORT1Q99523 831 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 VAT1Q99536 393 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 AGO3Q9H9G7 860 aaKnown RBP22.25■■□□□ 1.15
SHMT1-202ENST00000352886 CHRAC1Q9NRG0 131 aa22.25■■□□□ 1.15
SHMT1-202ENST00000352886 TDRD15B5MCY1 1934 aaKnown RBP22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms