RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MYBL1P10243 752 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 MAPTP10636 758 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 EPCAMP16422 314 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 NAA35Q5VZE5 725 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 RAP1GAP2Q684P5 730 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TYW1BQ6NUM6 668 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 MTFR2Q6P444 385 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PACS1Q6VY07 963 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 AHI1Q8N157 1196 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SPEM1Q8N4L4 309 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SLC2A14Q8TDB8 520 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 DNASE1L2Q92874 299 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CNOT6LQ96LI5 555 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 RABEP2Q9H5N1 569 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ARHGAP28Q9P2N2 729 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 APOBEC3BQ9UH17 382 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SMIM23A6NLE4 172 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 HNRNPCL2B2RXH8 293 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TTI1O43156 1089 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 HNRNPCL1O60812 293 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 KRT14P02533 472 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 GALTP07902 379 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 OTX2P32243 289 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 CLCN5P51795 746 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 MRPS21P82921 87 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 KCNC4Q03721 635 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 CDK18Q07002 472 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 COASYQ13057 564 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TMEM63BQ5T3F8 832 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 HFE2Q6ZVN8 426 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 UNC93AQ86WB7 457 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 NXF3Q9H4D5 531 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 VTI1BQ9UEU0 232 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TRMT6Q9UJA5 497 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 ADAMTS5Q9UNA0 930 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 ATXN7O15265 892 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 ARHGEF9O43307 516 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 SMIM24O75264 130 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 EIF4HQ15056 248 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 HSF5Q4G112 596 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 FRMD5Q7Z6J6 570 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF589Q86UQ0 364 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 MYO1HQ8N1T3 1032 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 CABS1Q96KC9 395 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 WDR26Q9H7D7 661 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 VANGL2Q9ULK5 521 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 NUMBLQ9Y6R0 609 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 EP300Q09472 2414 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 CACNA1BQ00975 2339 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 SOWAHDA6NJG2 315 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 GFAPP14136 432 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 RAB28P51157 221 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 BDH1Q02338 343 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 MORC3Q14149 939 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 SGK2Q9HBY8 427 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 RAPGEFL1Q9UHV5 662 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF112Q9UJU3 913 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 SETBP1Q9Y6X0 1596 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TARSL2A2RTX5 802 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 DGKIO75912 1065 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 KCNA2P16389 499 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF7P17097 686 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 GPD1P21695 349 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 STIP1P31948 543 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 STX4Q12846 297 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 PLXDC1Q8IUK5 500 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 PDIK1LQ8N165 341 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TOP6BLQ8N6T0 577 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TOP1MTQ969P6 601 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 TSPAN17Q96FV3 270 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 GSDMAQ96QA5 445 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 PABPC3Q9H361 631 aaKnown RBP8.59□□□□□ -1.03
HMGB1-203ENST00000341423 WWOXQ9NZC7 414 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 HPSEQ9Y251 543 aa8.59□□□□□ -1.03
HMGB1-203ENST00000341423 DEPDC5O75140 1603 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 A0A087X0B3 334 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ZRANB2O95218 330 aaKnown RBP eCLIP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 POP4O95707 220 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ALOX5P09917 674 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 YWHAZP63104 245 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 POU5F1BQ06416 359 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 DSC1Q08554 894 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 PRRT3Q5FWE3 981 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 HECTD2Q5U5R9 776 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 HHATQ5VTY9 493 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 CRTC3Q6UUV7 619 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 C16orf62Q7Z3J2 963 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 MRPL43Q8N983 215 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 RASGEF1AQ8N9B8 481 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 WDR36Q8NI36 951 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ANAPC7Q9UJX3 599 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 DAAM1Q9Y4D1 1078 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 KCNJ18B7U540 433 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 GSTA4O15217 222 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 DHX15O43143 795 aaKnown RBP8.58□□□□□ -1.04
HMGB1-203ENST00000341423 UGT2B4P06133 528 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 ADIGQ0VDE8 80 aa8.58□□□□□ -1.04
HMGB1-203ENST00000341423 CNTN1Q12860 1018 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms