RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CD72P21854 359 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 PRKCQQ04759 706 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 ADCY2Q08462 1091 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 PPP2R5EQ16537 467 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 GRAMD4Q6IC98 578 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 UMODL1-AS1Q8N2C9 162 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 NPWQ8N729 165 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 FEM1AQ9BSK4 669 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 HEMGNQ9BXL5 484 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 KLC2Q9H0B6 622 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 CARD9Q9H257 536 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 NOL6Q9H6R4 1146 aaKnown RBP22.76■■□□□ 1.23
SDC3-202ENST00000339394 GGA2Q9UJY4 613 aa22.76■■□□□ 1.23
SDC3-202ENST00000339394 ILVBLA1L0T0 632 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 FANCGO15287 622 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 KAT7O95251 611 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 MZF1P28698 734 aaPredicted RBP22.75■■□□□ 1.23
SDC3-202ENST00000339394 CXCR5P32302 372 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 CSKP41240 450 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 OXCT1P55809 520 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 ETF1P62495 437 aaKnown RBP22.75■■□□□ 1.23
SDC3-202ENST00000339394 KDSRQ06136 332 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 PON2Q15165 354 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 GEN1Q17RS7 908 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 PREPLQ4J6C6 727 aaPredicted RBP22.75■■□□□ 1.23
SDC3-202ENST00000339394 RNF219Q5W0B1 726 aaPredicted RBP22.75■■□□□ 1.23
SDC3-202ENST00000339394 NCBP2-AS2Q69YL0 99 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 SLC9A4Q6AI14 798 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 C1orf228Q6PIY5 440 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 KIAA0907Q7Z7F0 614 aaPredicted RBP22.75■■□□□ 1.23
SDC3-202ENST00000339394 RFX6Q8HWS3 928 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 SIX5Q8N196 739 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.75■■□□□ 1.234e-6■■■□□ 14.9
SDC3-202ENST00000339394 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.75■■□□□ 1.23
SDC3-202ENST00000339394 FAM3CQ92520 227 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 OSBPL8Q9BZF1 889 aa22.75■■□□□ 1.23
SDC3-202ENST00000339394 COL4A3Q01955 1670 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 MYOFQ9NZM1 2061 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 MAN2B1O00754 1011 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 RAMP2O60895 175 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 PABPC1P11940 636 aaKnown RBP22.74■■□□□ 1.23
SDC3-202ENST00000339394 PTPN7P35236 360 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 CETN2P41208 172 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 GRIA2P42262 883 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 NUMBP49757 651 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 GNA12Q03113 381 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 SLC12A1Q13621 1099 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 TMEM196Q5HYL7 178 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 ZNF852Q6ZMS4 543 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 ZNF783Q6ZMS7 281 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 SFTPA1Q8IWL2 248 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 LZTR1Q8N653 840 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 PLD5Q8N7P1 536 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 TERB1Q8NA31 727 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 EXOC4Q96A65 974 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 ALG14Q96F25 216 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 CELF6Q96J87 481 aaKnown RBP22.74■■□□□ 1.23
SDC3-202ENST00000339394 C16orf45Q96MC5 204 aaPredicted RBP22.74■■□□□ 1.23
SDC3-202ENST00000339394 HERPUD2Q9BSE4 406 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 MUC3BQ9H195 1237 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 INTS6Q9UL03 887 aaKnown RBP22.74■■□□□ 1.23
SDC3-202ENST00000339394 EFR3BQ9Y2G0 817 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 OR51B4Q9Y5P0 310 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 TICRRQ7Z2Z1 1910 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 COL4A2P08572 1712 aa22.74■■□□□ 1.23
SDC3-202ENST00000339394 A0A0A0MRY4 1105 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 TBC1D3BA6NDS4 549 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 DCXO43602 365 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 CST8O60676 142 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 NDST2P52849 883 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 DYNLT1P63172 113 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 TFDP2Q14188 446 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 POLD3Q15054 466 aaPredicted RBP22.73■■□□□ 1.23
SDC3-202ENST00000339394 TMEM215Q68D42 235 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 ADIPOR2Q86V24 386 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 SUGP1Q8IWZ8 645 aaKnown RBP22.73■■□□□ 1.23
SDC3-202ENST00000339394 APCDD1Q8J025 514 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 NETO2Q8NC67 525 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 EDAQ92838 391 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 SHDQ96IW2 340 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 LRRC19Q9H756 370 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 PRDM16Q9HAZ2 1276 aa22.73■■□□□ 1.23
SDC3-202ENST00000339394 PRRT4C9JH25 899 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 APOL1O14791 398 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 ZFXP17010 805 aaPredicted RBP22.72■■□□□ 1.23
SDC3-202ENST00000339394 SERPINB6P35237 376 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 YBEYP58557 167 aaPredicted RBP22.72■■□□□ 1.23
SDC3-202ENST00000339394 STARD6P59095 220 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 PAFAH1B3Q15102 231 aaKnown RBP22.72■■□□□ 1.23
SDC3-202ENST00000339394 PLEKHG6Q3KR16 790 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 FUT11Q495W5 492 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 AFMIDQ63HM1 303 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 ARHGAP12Q8IWW6 846 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 TP53INP2Q8IXH6 220 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 AHI1Q8N157 1196 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 OR7D4Q8NG98 312 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 NAPGQ99747 312 aaPredicted RBP22.72■■□□□ 1.23
SDC3-202ENST00000339394 SLC39A8Q9C0K1 460 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 MAGEH1Q9H213 219 aa22.72■■□□□ 1.23
SDC3-202ENST00000339394 VPS28Q9UK41 221 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms