RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 LSM7Q9UK45 103 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-202ENST00000334448 CCDC195A0A1B0GUA6 201 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 A0A1B0GVM2 712 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 E2F8A0AVK6 867 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TCAF2A6NFQ2 919 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 RNF103O00237 685 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 MAP2K7O14733 419 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 CHADO15335 359 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 MAFKO60675 156 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 FAM153BP0C7A2 387 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 ETS1P14921 441 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 ACTN2P35609 894 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 ITGA8P53708 1063 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 USP4Q13107 963 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 LRIT3Q3SXY7 679 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 FAM153CQ494X1 144 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 MPP7Q5T2T1 576 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 GPR158Q5T848 1215 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TIGD7Q6NT04 549 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TMC3Q7Z5M5 1100 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 PRUNE1Q86TP1 453 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TP53INP2Q8IXH6 220 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 PPIL6Q8IXY8 311 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 CCDC13Q8IYE1 715 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 LGI2Q8N0V4 545 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 ZCCHC9Q8N567 271 aaKnown RBP15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 ATPAF2Q8N5M1 289 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 MAB21L3Q8N8X9 362 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 NAT8LQ8N9F0 302 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 CPT1BQ92523 772 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 MAML1Q92585 1016 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TCEAL4Q96EI5 215 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 MYEOVQ96EZ4 313 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 FUT8Q9BYC5 575 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 FRMD8Q9BZ67 464 aaPredicted RBP15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 SLC39A8Q9C0K1 460 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 NDFIP2Q9NV92 336 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 SMPD4Q9NXE4 827 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 IGSF9Q9P2J2 1179 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 FAM153AQ9UHL3 310 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 ANAPC5Q9UJX4 755 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TRHDEQ9UKU6 1024 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 TBC1D30Q9Y2I9 924 aa15.3■□□□□ 0.04
CCDC88C-202ENST00000334448 DENND4CQ5VZ89 1909 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 GOLGA6L7A0A1B0GV03 622 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 LEFTY2O00292 366 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 PTPN3P26045 913 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 FDFT1P37268 417 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 VPS41P49754 854 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 SEMA5AQ13591 1074 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 KCNJ11Q14654 390 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 TEAD2Q15562 447 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 STXBP5Q5T5C0 1151 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 ZNF783Q6ZMS7 281 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 HDXQ7Z353 690 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 GRASPQ7Z6J2 395 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 SETD3Q86TU7 594 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 RBM23Q86U06 439 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 HJURPQ8NCD3 748 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 SMG7Q92540 1137 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 PRCCQ92733 491 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 IL12RB2Q99665 862 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 EIF2B3Q9NR50 452 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 CFAP97Q9P2B7 532 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 MYO7AQ13402 2215 aa15.29■□□□□ 0.04
CCDC88C-202ENST00000334448 ILVBLA1L0T0 632 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 ARHGAP42A6NI28 874 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 RASA4BC9J798 803 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 MATN3O15232 486 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 RASA4O43374 803 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 CACNG3O60359 315 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 RAMP2O60895 175 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 GLP2RO95838 553 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 PEX11BO96011 259 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 IRF1P10914 325 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 GJA1P17302 382 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 TPSB2P20231 275 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 AVPR1AP37288 418 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 IFNAR2P48551 515 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 CDK16Q00536 496 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 AP1B1Q10567 949 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 HYAL1Q12794 435 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 CASP8Q14790 479 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 COL19A1Q14993 1142 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 SLMAPQ14BN4 828 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 TPSAB1Q15661 275 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 ZNF77Q15935 545 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 ANKRD20A2Q5SQ80 823 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 C6orf118Q5T5N4 469 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 ANKRD20A1Q5TYW2 823 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 ANKRD20A3Q5VUR7 823 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 RFWD3Q6PCD5 774 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 GPR149Q86SP6 731 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 CCNYQ8ND76 341 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 MCUQ8NE86 351 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 CCDC110Q8TBZ0 833 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 USP13Q92995 863 aaPredicted RBP15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 EXOC4Q96A65 974 aa15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 CELF6Q96J87 481 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-202ENST00000334448 MAGEH1Q9H213 219 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms