RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PTPN11Q06124 597 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MAPK7Q13164 816 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MYBPC3Q14896 1274 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 NR6A1Q15406 480 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CBWD6Q4V339 395 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 IFI44LQ53G44 452 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CBWD3Q5JTY5 395 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CBWD5Q5RIA9 395 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 DNAJC24Q6P3W2 148 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 RIPOR1Q6ZS17 1223 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 STOX1Q6ZVD7 989 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 KIF18BQ86Y91 864 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 MAML2Q8IZL2 1156 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 GUF1Q8N442 669 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ZNF439Q8NDP4 499 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CSNK2A3Q8NEV1 391 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 TSSK1BQ9BXA7 367 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ERVK-6Q9BXR3 956 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 PPA2Q9H2U2 334 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 LRWD1Q9UFC0 647 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 ERVK-19Q9WJR5 959 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 CDY2AQ9Y6F7 541 aa7.77□□□□□ -1.17
LIMCH1-201ENST00000313860 RTL9Q8NET4 1388 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SCAMP3O14828 347 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 LRRN2O75325 713 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 ALDH1A2O94788 518 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 MGST1P10620 155 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 FGFR3P22607 806 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 DGKAP23743 735 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 AKT1P31749 480 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 RFC5P40937 340 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 HSPA2P54652 639 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 HSF1Q00613 529 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 GCKRQ14397 625 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 TIMM50Q3ZCQ8 353 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 XKR3Q5GH77 459 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 TPRG1LQ5T0D9 272 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 ALG1LQ6GMV1 187 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 GDPD4Q6W3E5 623 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 ABI1Q8IZP0 508 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 OFCC1Q8IZS5 231 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SLC43A2Q8N370 569 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CPT1BQ92523 772 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 ASB2Q96Q27 587 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 MED15Q96RN5 788 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SEPHS2Q99611 448 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SPAG8Q99932 426 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 TUBA1CQ9BQE3 449 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CDADC1Q9BWV3 514 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 WDR11Q9BZH6 1224 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 MYNNQ9NPC7 610 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 BIN3Q9NQY0 253 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PTTG3PQ9NZH4 202 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 MORF4L1Q9UBU8 362 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 TRMT112Q9UI30 125 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 VPS28Q9UK41 221 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CNOT11Q9UKZ1 510 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PCDHB12Q9Y5F1 795 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 GPR89AB7ZAQ6 455 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 J3QR89 54 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 GPR89BP0CG08 455 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PGAM2P15259 253 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CTHP32929 405 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 IREB2P48200 963 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CLK2P49760 499 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 ECT2LQ008S8 904 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SP140Q13342 867 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SNX20Q7Z614 316 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 DDX53Q86TM3 631 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 OR52K1Q8NGK4 314 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 FBXO30Q8TB52 745 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SSH3Q8TE77 659 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PANX1Q96RD7 426 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 GORASP1Q9BQQ3 440 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 HEPHQ9BQS7 1158 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CDH19Q9H159 772 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 RMND5AQ9H871 391 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PRDM9Q9NQV7 894 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SEMA3EO15041 775 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 NIPSNAP2O75323 286 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CD2BP2O95400 341 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 LATS1O95835 1130 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PIGRP01833 764 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 QDPRP09417 244 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 MAPK1P28482 360 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 CCR4P51679 360 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 GEMIN4P57678 1058 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 IL2P60568 153 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 HES5Q5TA89 166 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PRAMEF17Q5VTA0 474 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PLCXD3Q63HM9 321 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 DNAJC10Q8IXB1 793 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 KLHL6Q8WZ60 621 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 EIF2AK1Q9BQI3 630 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PHF20Q9BVI0 1012 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 SAMD10Q9BYL1 202 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PYCARDQ9ULZ3 195 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 PHTF1Q9UMS5 762 aa7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 FARP1Q9Y4F1 1045 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-201ENST00000313860 NCANO14594 1321 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms