RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 OTUD5Q96G74 571 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 TARS2Q9BW92 718 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 STX16-NPEPL1H3BU86 382 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 STX16O14662 325 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CHP2O43745 196 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 EGFRP00533 1210 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 XIAPP98170 497 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ULK3Q6PHR2 472 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 NUDT12Q9BQG2 462 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 C1QTNF1Q9BXJ1 281 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 MTMR12Q9C0I1 747 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CCNB1IP1Q9NPC3 277 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 C8orf4Q9NR00 106 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF232Q9UNY5 417 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CASZ1Q86V15 1759 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 SRRM3A6NNA2 597 aaPredicted RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 DYNC1LI2O43237 492 aaPredicted RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 HLA-DQA2P01906 255 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 DBTP11182 482 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 RENBPP51606 427 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 PKNOX1P55347 436 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 SQLEQ14534 574 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 EZH2Q15910 746 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ACTL9Q8TC94 416 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 APOL2Q9BQE5 337 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 GSDMCQ9BYG8 508 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 H7C4K7 107 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 OGTO15294 1046 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 RPL21P46778 160 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 TMEM62Q0P6H9 643 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 BAATQ14032 418 aaPredicted RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF398Q8TD17 642 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 SAGE2PA6NJ88 616 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 LOC110117498-PIK3R3F6TDL0 507 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 LRG1P02750 347 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CYP2C9P11712 490 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 RRM1P23921 792 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 DLG4P78352 724 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 BST2Q10589 180 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CBWD3Q5JTY5 395 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CBWD5Q5RIA9 395 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 CAMKK1Q8N5S9 505 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 DSEQ9UL01 958 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 MRPS7Q9Y2R9 242 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 ANPEPP15144 967 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 DNAJC14Q6Y2X3 702 aaPredicted RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 EIF1ADQ8N9N8 165 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 NSUN4Q96CB9 384 aaKnown RBP14.1□□□□□ -0.15
CSPG4-201ENST00000308508 TOR4AQ9NXH8 423 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 BAIAP2Q9UQB8 552 aa14.1□□□□□ -0.15
CSPG4-201ENST00000308508 JCHAINP01591 159 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 OLR1P78380 273 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 PALB2Q86YC2 1186 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HERC6Q8IVU3 1022 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 ZCCHC9Q8N567 271 aaKnown RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 SERPINA1P01009 418 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 BIKQ13323 160 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 OFCC1Q8IZS5 231 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 FBXO32Q969P5 355 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 CITED4Q96RK1 184 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 GPN1Q9HCN4 374 aaPredicted RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 LRRC4BQ9NT99 713 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 PIM2Q9P1W9 311 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 DHFRP00374 187 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 SMIM11AP58511 58 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 NAA20P61599 178 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 ESRP1Q6NXG1 681 aaKnown RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 PRDM8Q9NQV8 689 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 PTGFRNQ9P2B2 879 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 RPL26L1Q9UNX3 145 aaKnown RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 MDM4O15151 490 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HIST1H2ABP04908 130 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HOXB8P17481 243 aaPredicted RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 CDC25CP30307 473 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 GPR1P46091 355 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 CLK2P49760 499 aaKnown RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HMGCS2P54868 508 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 SKP1P63208 163 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 IFI35P80217 286 aaPredicted RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 TNFAIP8L3Q5GJ75 292 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 CYP20A1Q6UW02 462 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 IL27RAQ6UWB1 636 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 C16orf86Q6ZW13 317 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HIST3H2AQ7L7L0 130 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 SAPCD2Q86UD0 394 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HIST1H2ACQ93077 130 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 HGH1Q9BTY7 390 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 TRHDEQ9UKU6 1024 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 TBC1D30Q9Y2I9 924 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 GPR107Q5VW38 600 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 DAGLBQ8NCG7 672 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 CRISPLD1Q9H336 500 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 C19orf81C9J6K1 198 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 KBTBD13C9JR72 458 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 LTFP02788 710 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF7P17097 686 aaPredicted RBP14.09□□□□□ -0.15
CSPG4-201ENST00000308508 OMPP47874 163 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 RBBP4Q09028 425 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF549Q6P9A3 640 aa14.09□□□□□ -0.15
CSPG4-201ENST00000308508 MCOLN3Q8TDD5 553 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms