RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SAR1AQ9NR31 198 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 SIRPGQ9P1W8 387 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 SUFUQ9UMX1 484 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 A0A096LPK6 155 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 CFLARO15519 480 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 XPOTO43592 962 aaKnown RBP17.01■□□□□ 0.31
VPS54-201ENST00000272322 HSPA4LO95757 839 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 ITGB1P05556 798 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 ARSAP15289 507 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 CHRNA4P43681 627 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 ARPP19P56211 112 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 HUNKP57058 714 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 TIGD5Q53EQ6 642 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 TEDDM1Q5T9Z0 273 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 ZDHHC17Q8IUH5 632 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 DENND6AQ8IWF6 608 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 CCNYL1Q8N7R7 359 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 ZNF781Q8N8C0 355 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 PIWIL2Q8TC59 973 aaKnown RBP17.01■□□□□ 0.31
VPS54-201ENST00000272322 NDFIP2Q9NV92 336 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 WDR90Q96KV7 1748 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 SMIM35A0A1B0GVV1 85 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 THP07101 528 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 TPSB2P20231 275 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 TUBP50607 506 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 TPSAB1Q15661 275 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 NAPRTQ6XQN6 538 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 TFAP2DQ7Z6R9 452 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 OLFM3Q96PB7 478 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 COLEC11Q9BWP8 271 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 AGO3Q9H9G7 860 aaKnown RBP17.01■□□□□ 0.31
VPS54-201ENST00000272322 PLA2G4CQ9UP65 541 aa17.01■□□□□ 0.31
VPS54-201ENST00000272322 BUD23O43709 281 aaKnown RBP17■□□□□ 0.31
VPS54-201ENST00000272322 UBTFL6P0CB48 400 aaPredicted RBP17■□□□□ 0.31
VPS54-201ENST00000272322 FGF3P11487 239 aaPredicted RBP17■□□□□ 0.31
VPS54-201ENST00000272322 PCLAFQ15004 111 aa17■□□□□ 0.31
VPS54-201ENST00000272322 TEX44Q53QW1 395 aa17■□□□□ 0.31
VPS54-201ENST00000272322 LRRC8BQ6P9F7 803 aa17■□□□□ 0.31
VPS54-201ENST00000272322 RIPOR1Q6ZS17 1223 aa17■□□□□ 0.31
VPS54-201ENST00000272322 SLC26A7Q8TE54 656 aa17■□□□□ 0.31
VPS54-201ENST00000272322 HNRNPABQ99729 332 aaKnown RBP17■□□□□ 0.31
VPS54-201ENST00000272322 TASP1Q9H6P5 420 aa17■□□□□ 0.31
VPS54-201ENST00000272322 DCLRE1BQ9H816 532 aa17■□□□□ 0.31
VPS54-201ENST00000272322 PNPLA8Q9NP80 782 aa17■□□□□ 0.31
VPS54-201ENST00000272322 THAP1Q9NVV9 213 aa17■□□□□ 0.31
VPS54-201ENST00000272322 ENO4A6NNW6 628 aa17■□□□□ 0.31
VPS54-201ENST00000272322 NVLO15381 856 aaKnown RBP17■□□□□ 0.31
VPS54-201ENST00000272322 ZCCHC18P0CG32 403 aa17■□□□□ 0.31
VPS54-201ENST00000272322 CPA3P15088 417 aa17■□□□□ 0.31
VPS54-201ENST00000272322 PGAM1P18669 254 aa17■□□□□ 0.31
VPS54-201ENST00000272322 MAGEA3P43357 314 aa17■□□□□ 0.31
VPS54-201ENST00000272322 FSCN1Q16658 493 aaKnown RBP17■□□□□ 0.31
VPS54-201ENST00000272322 SCUBE1Q8IWY4 988 aa17■□□□□ 0.31
VPS54-201ENST00000272322 PARK7Q99497 189 aaKnown RBP17■□□□□ 0.31
VPS54-201ENST00000272322 MAF1Q9H063 256 aa17■□□□□ 0.31
VPS54-201ENST00000272322 TMLHEQ9NVH6 421 aa17■□□□□ 0.31
VPS54-201ENST00000272322 ZNF180Q9UJW8 692 aa17■□□□□ 0.31
VPS54-201ENST00000272322 COL1A2P08123 1366 aa17■□□□□ 0.31
VPS54-201ENST00000272322 ZNF638Q14966 1978 aaKnown RBP17■□□□□ 0.31
VPS54-201ENST00000272322 SHROOM3Q8TF72 1996 aa17■□□□□ 0.31
VPS54-201ENST00000272322 VAPBO95292 243 aa17■□□□□ 0.31
VPS54-201ENST00000272322 GSRP00390 522 aa17■□□□□ 0.31
VPS54-201ENST00000272322 GNAZP19086 355 aa17■□□□□ 0.31
VPS54-201ENST00000272322 CD52P31358 61 aa17■□□□□ 0.31
VPS54-201ENST00000272322 CD68P34810 354 aaPredicted RBP17■□□□□ 0.31
VPS54-201ENST00000272322 PLK1P53350 603 aa17■□□□□ 0.31
VPS54-201ENST00000272322 MAXP61244 160 aa17■□□□□ 0.31
VPS54-201ENST00000272322 MTBPQ96DY7 904 aa17■□□□□ 0.31
VPS54-201ENST00000272322 KCNK4Q9NYG8 393 aa17■□□□□ 0.31
VPS54-201ENST00000272322 SLC7A8Q9UHI5 535 aa17■□□□□ 0.31
VPS54-201ENST00000272322 C9IYK1 514 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 AIM2O14862 343 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 OPHN1O60890 802 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 PSMG1O95456 288 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 HMBSP08397 361 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 EPHA3P29320 983 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 FDFT1P37268 417 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 THPOP40225 353 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 GJA9P57773 515 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 DAOAP59103 153 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 CUL3Q13618 768 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 LDB1Q86U70 411 aaPredicted RBP16.99■□□□□ 0.31
VPS54-201ENST00000272322 MYLPFQ96A32 169 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 FAM105AQ9NUU6 356 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 M0QZ92 97 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 STAU1O95793 577 aaKnown RBP16.99■□□□□ 0.31
VPS54-201ENST00000272322 MYCP01106 439 aaPredicted RBP16.99■□□□□ 0.31
VPS54-201ENST00000272322 C2P06681 752 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 TCN1P20061 433 aaPredicted RBP16.99■□□□□ 0.31
VPS54-201ENST00000272322 SPDYAQ5MJ70 313 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 TMEM198Q66K66 360 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 MBLAC2Q68D91 279 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 MAVSQ7Z434 540 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.99■□□□□ 0.31
VPS54-201ENST00000272322 LRRC39Q96DD0 335 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 CYP4F12Q9HCS2 524 aa16.99■□□□□ 0.31
VPS54-201ENST00000272322 GNEQ9Y223 722 aaKnown RBP16.99■□□□□ 0.31
VPS54-201ENST00000272322 FNDC3AQ9Y2H6 1198 aaKnown RBP16.99■□□□□ 0.31
VPS54-201ENST00000272322 ARL5CA6NH57 179 aa16.98■□□□□ 0.31
VPS54-201ENST00000272322 PAXIP1Q6ZW49 1069 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms