RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ANKRD42Q8N9B4 389 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 ANKLE1Q8NAG6 615 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 STKLD1Q8NE28 680 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 BCL7CQ8WUZ0 217 aaPredicted RBP15.68■□□□□ 0.1
SF3B4-201ENST00000271628 TOP1MTQ969P6 601 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 IGSF21Q96ID5 467 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 CEP41Q9BYV8 373 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 WBP1LQ9NX94 342 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 PCDHA11Q9Y5I1 949 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 HS3ST4Q9Y661 456 aa15.68■□□□□ 0.1
SF3B4-201ENST00000271628 MYO18AQ92614 2054 aaKnown RBP15.68■□□□□ 0.1
SF3B4-201ENST00000271628 ABHD14A-ACY1A0A1B0GW23 586 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 CARNS1A5YM72 827 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 WASH4PA8MWX3 477 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 FOXO6A8MYZ6 492 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 MOCS2O96007 188 aaPredicted RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 SLC8A1P32418 973 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 GRIA1P42261 906 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 KPNA1P52294 538 aaPredicted RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 EFTUD2Q15029 972 aaKnown RBP eCLIP15.67■□□□□ 0.13e-7■■■■□ 22.4
SF3B4-201ENST00000271628 TRIP4Q15650 581 aaPredicted RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 KIAA1841Q6NSI8 718 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 RNF168Q8IYW5 571 aaPredicted RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 CCDC63Q8NA47 563 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 MGARPQ8TDB4 240 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 GPR152Q8TDT2 470 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 ZNF333Q96JL9 665 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 TEKT5Q96M29 485 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 MAGEB18Q96M61 343 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 CDK5RAP1Q96SZ6 601 aaKnown RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 CRISPLD1Q9H336 500 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 ZNF180Q9UJW8 692 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 AP3B1O00203 1094 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 SOAT2O75908 522 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 VNN2O95498 520 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 AP2A1O95782 977 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 ELF3P78545 371 aaPredicted RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 EFEMP1Q12805 493 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 PSMD5Q16401 504 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 PRSS55Q6UWB4 352 aaPredicted RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 UNC5AQ6ZN44 842 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 ATPAF2Q8N5M1 289 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 GRAMD1AQ96CP6 724 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 STAMBPL1Q96FJ0 436 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 CELF6Q96J87 481 aaKnown RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 BTN2A3PQ96KV6 586 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 UBE2OQ9C0C9 1292 aaKnown RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 GBA3Q9H227 469 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 CD248Q9HCU0 757 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 FGFR1OP2Q9NVK5 253 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 HSFX1Q9UBD0 423 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 PPARGC1AQ9UBK2 798 aaKnown RBP15.67■□□□□ 0.1
SF3B4-201ENST00000271628 ARL2BPQ9Y2Y0 163 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 TTLL3Q9Y4R7 772 aa15.67■□□□□ 0.1
SF3B4-201ENST00000271628 NUP205Q92621 2012 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 GREB1Q4ZG55 1949 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 WDR27A2RRH5 827 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 ZBTB24O43167 697 aaPredicted RBP15.66■□□□□ 0.1
SF3B4-201ENST00000271628 PSMD3O43242 534 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 ZDHHC11BP0C7U3 371 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 KRT4P19013 534 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 IL9RQ01113 521 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 MPP2Q14168 576 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 PRPSAP1Q14558 356 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 TIGD7Q6NT04 549 aaPredicted RBP15.66■□□□□ 0.1
SF3B4-201ENST00000271628 CTAGE3PQ8IX95 158 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 RTL3Q8N8U3 475 aaKnown RBP15.66■□□□□ 0.1
SF3B4-201ENST00000271628 DPF3Q92784 378 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 AGAP3Q96P47 875 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 TTLL2Q9BWV7 592 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 MARCH2Q9P0N8 246 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 SLC38A8A6NNN8 435 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 DFFAO00273 331 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 EFCAB14O75071 495 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 OR1D2P34982 312 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 RING1Q06587 406 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 RIPK1Q13546 671 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 GALNTL6Q49A17 601 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 C10orf120Q5SQS8 335 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 SPOUT1Q5T280 376 aaKnown RBP15.66■□□□□ 0.1
SF3B4-201ENST00000271628 RASIP1Q5U651 963 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 CASC4Q6P4E1 433 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 SPATA21Q7Z572 469 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 ARHGAP12Q8IWW6 846 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 MPP5Q8N3R9 675 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 ZNF276Q8N554 614 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 PDZD8Q8NEN9 1154 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 MZB1Q8WU39 189 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 DEPDC1BQ8WUY9 529 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 PPP1R2P1Q96PQ5 205 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 ABCF3Q9NUQ8 709 aa15.66■□□□□ 0.1
SF3B4-201ENST00000271628 A0A1W2PPM1 405 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 ARHGAP42A6NI28 874 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 MATN3O15232 486 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 TYROBPO43914 113 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 KRT37O76014 449 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 ZWINTO95229 277 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 JCHAINP01591 159 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 C1QAP02745 245 aa15.65■□□□□ 0.1
SF3B4-201ENST00000271628 SOD2P04179 222 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms