RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 AASDHQ4L235 1098 aaPredicted RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 SFMBT2Q5VUG0 894 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 LYSMD4Q5XG99 296 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 WDR59Q6PJI9 974 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 MCOLN2Q8IZK6 566 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 C12orf50Q8NA57 414 aaPredicted RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 KDM1BQ8NB78 822 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 CENPIQ92674 756 aaPredicted RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 TOE1Q96GM8 510 aaKnown RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 RPL10LQ96L21 214 aaKnown RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 FEM1AQ9BSK4 669 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 EDEM3Q9BZQ6 932 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 HAUS4Q9H6D7 363 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 WSB2Q9NYS7 404 aaPredicted RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 CDV3Q9UKY7 258 aaKnown RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 TBC1D30Q9Y2I9 924 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 OR51B4Q9Y5P0 310 aa23.63■■□□□ 1.37
LSM4-201ENST00000252816 TNRC6BQ9UPQ9 1833 aaKnown RBP23.63■■□□□ 1.37
LSM4-201ENST00000252816 IGLV3-10A0A075B6K4 115 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 SIGLEC16A6NMB1 481 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 TTC34A8MYJ7 566 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 E9PAM4 449 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 SIN3BO75182 1162 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 IGLV3-19P01714 112 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 OXCT1P55809 520 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 RPS14P62263 151 aaKnown RBP23.62■■□□□ 1.37
LSM4-201ENST00000252816 ZNF33AQ06730 810 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 PUM1Q14671 1186 aaKnown RBP eCLIP23.62■■□□□ 1.378e-8■□□□□ 9.6
LSM4-201ENST00000252816 ARID5BQ14865 1188 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 FIGNQ5HY92 759 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 DNAJC24Q6P3W2 148 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 ZNF571Q7Z3V5 609 aaPredicted RBP23.62■■□□□ 1.37
LSM4-201ENST00000252816 NETO1Q8TDF5 533 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 MPP6Q9NZW5 540 aa23.62■■□□□ 1.37
LSM4-201ENST00000252816 ITIH6Q6UXX5 1313 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 ATXN2Q99700 1313 aaKnown RBP23.61■■□□□ 1.37
LSM4-201ENST00000252816 ACADMP11310 421 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 GPD1P21695 349 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 RRM1P23921 792 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 PRKCIP41743 596 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 HDAC4P56524 1084 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 PPP1R15BQ5SWA1 713 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 C9orf64Q5T6V5 341 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 LRRC31Q6UY01 552 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 STRADAQ7RTN6 431 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 DNAAF5Q86Y56 855 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 SYT12Q8IV01 421 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 FAM172AQ8WUF8 416 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 ZNF419Q96HQ0 510 aaPredicted RBP23.61■■□□□ 1.37
LSM4-201ENST00000252816 HSPA12BQ96MM6 686 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 FBRSQ9HAH7 460 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 PILRBQ9UKJ0 227 aa23.61■■□□□ 1.37
LSM4-201ENST00000252816 TMCO5BA8MYB1 307 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 SRGAP2O75044 1071 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 NDUFS2O75306 463 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 SKILP12757 684 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 ADRA1BP35368 520 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 RPL7AP62424 266 aaKnown RBP23.6■■□□□ 1.37
LSM4-201ENST00000252816 SULT2A1Q06520 285 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 ACBD5Q5T8D3 534 aaPredicted RBP23.6■■□□□ 1.37
LSM4-201ENST00000252816 RNF219Q5W0B1 726 aaPredicted RBP23.6■■□□□ 1.37
LSM4-201ENST00000252816 TFAP2DQ7Z6R9 452 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 MCEEQ96PE7 176 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 GPR174Q9BXC1 333 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 MAGEB5Q9BZ81 275 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 RSPH9Q9H1X1 276 aaPredicted RBP23.6■■□□□ 1.37
LSM4-201ENST00000252816 IFNKQ9P0W0 207 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 ZNF212Q9UDV6 495 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 CACNA1AO00555 2505 aa23.6■■□□□ 1.37
LSM4-201ENST00000252816 CEP192Q8TEP8 1941 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 LNP1A1A4G5 178 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 DDX3XO00571 662 aaKnown RBP eCLIP23.59■■□□□ 1.371e-52■■■■■ 70.2
LSM4-201ENST00000252816 SLC30A4O14863 429 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 KHNYNO15037 678 aaKnown RBP23.59■■□□□ 1.37
LSM4-201ENST00000252816 SDHBP21912 280 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 OXTRP30559 389 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 KLHL30Q0D2K2 578 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 PEAR1Q5VY43 1037 aaPredicted RBP23.59■■□□□ 1.37
LSM4-201ENST00000252816 FAM124AQ86V42 546 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 CCDC185Q8N715 623 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 NUP58Q9BVL2 599 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 VPS28Q9UK41 221 aa23.59■■□□□ 1.37
LSM4-201ENST00000252816 EDDM13A0A1B0GTR0 161 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 TARSL2A2RTX5 802 aaKnown RBP23.58■■□□□ 1.37
LSM4-201ENST00000252816 RHOCP08134 193 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 VAV1P15498 845 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 ZNF143P52747 638 aaPredicted RBP23.58■■□□□ 1.37
LSM4-201ENST00000252816 IRX4P78413 519 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 ZNF776Q68DI1 518 aaPredicted RBP23.58■■□□□ 1.37
LSM4-201ENST00000252816 PTPRN2Q92932 1015 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 VCPIP1Q96JH7 1222 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 PPP1R9BQ96SB3 815 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 PSMB7Q99436 277 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 MUC3BQ9H195 1237 aa23.58■■□□□ 1.37
LSM4-201ENST00000252816 A0A0D9SEW6 157 aa23.57■■□□□ 1.36
LSM4-201ENST00000252816 A0A1W2PQJ5 194 aa23.57■■□□□ 1.36
LSM4-201ENST00000252816 FAM72CH0Y354 149 aa23.57■■□□□ 1.36
LSM4-201ENST00000252816 CCP110O43303 1012 aa23.57■■□□□ 1.36
LSM4-201ENST00000252816 ATMINO43313 823 aaPredicted RBP23.57■■□□□ 1.36
LSM4-201ENST00000252816 LIMK1P53667 647 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms