RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NUCKS1Q9H1E3 243 aaKnown RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 EEA1Q15075 1411 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 SENP3Q9H4L4 574 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 NGDNQ8NEJ9 315 aaKnown RBP3.31□□□□□ -1.88
SCN1A-219ENST00000641575 DOCK10Q96BY6 2186 aa3.31□□□□□ -1.88
SCN1A-219ENST00000641575 EZRP15311 586 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 AEBP1Q8IUX7 1158 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ERCC4Q92889 916 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 DDX23Q9BUQ8 820 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 SEPT10Q9P0V9 454 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 EIF3AQ14152 1382 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 DHX16O60231 1041 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ZNF569Q5MCW4 686 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 MNS1Q8NEH6 495 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 NCAPGQ9BPX3 1015 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ABCC9O60706 1549 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 POTEJP0CG39 1038 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 MFAP1P55081 439 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ZFYVE27Q5T4F4 411 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ATF7IPQ6VMQ6 1270 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 DNAJC2Q99543 621 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 RNF216Q9NWF9 866 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 CACNA1EQ15878 2313 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 MYH7P12883 1935 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 POLD1P28340 1107 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 SKOR2Q2VWA4 1001 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 DIAPH3Q9NSV4 1193 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 EIF4E1BA6NMX2 242 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 XPCQ01831 940 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 C16orf72Q14CZ0 275 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 KMT5BQ4FZB7 885 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 PDILTQ8N807 584 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 TSPYL2Q9H2G4 693 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 MAP4K4O95819 1239 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC146Q8IYE0 955 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 TRIM5Q9C035 493 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ATP6V1DQ9Y5K8 247 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 WRNQ14191 1432 aaPredicted RBP eCLIP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 TRIP11Q15643 1979 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 GOLGA6L19H0YKK7 550 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ADRA2BP18089 450 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC96Q2M329 555 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 CC2D1BQ5T0F9 858 aaKnown RBP3.3□□□□□ -1.88
SCN1A-219ENST00000641575 MBD3O95983 291 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 TERF2IPQ9NYB0 399 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 CHD4Q14839 1912 aa3.3□□□□□ -1.88
SCN1A-219ENST00000641575 ANKRD18BA2A2Z9 1011 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 LEO1Q8WVC0 666 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 EDEM3Q9BZQ6 932 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 FAM114A2Q9NRY5 505 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 VAMP4O75379 141 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 ZWINTO95229 277 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 KIF22Q14807 665 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 CCDC39Q9UFE4 941 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SNRNP200O75643 2136 aaKnown RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 GSE1Q14687 1217 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 HOOK3Q86VS8 718 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 CETN2P41208 172 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 AMPHP49418 695 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 RBM25P49756 843 aaKnown RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 GABPB2Q8TAK5 448 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 TTC12Q9H892 705 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 GOLGA6L10A6NI86 522 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SYTL4Q96C24 671 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SUDS3Q9H7L9 328 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SPC25Q9HBM1 224 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 ZGRF1Q86YA3 2104 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 KIF20AO95235 890 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 HOMER1Q86YM7 354 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 DDX11Q96FC9 970 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 POGZQ7Z3K3 1410 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SMG6Q86US8 1419 aaKnown RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 UACAQ9BZF9 1416 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 HSP90AB2PQ58FF8 381 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 WDR66Q8TBY9 1149 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SVILO95425 2214 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 PALM3A6NDB9 673 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 SLF2Q8IX21 1173 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 GNL3LQ9NVN8 582 aaKnown RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 GPATCH11Q8N954 259 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 CFAP57Q96MR6 1250 aa3.29□□□□□ -1.88
SCN1A-219ENST00000641575 MYH14Q7Z406 1995 aaKnown RBP3.29□□□□□ -1.88
SCN1A-219ENST00000641575 TDO2P48775 406 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 TMOD4Q9NZQ9 345 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 ORC3Q9UBD5 711 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 IFIT2P09913 472 aaKnown RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 SSR1P43307 286 aaKnown RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 APOBRQ0VD83 1088 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 CABP2Q9NPB3 220 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 MYH8P13535 1937 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 ZNF652Q9Y2D9 606 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 V9GYY5 206 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-219ENST00000641575 CACNA1IQ9P0X4 2223 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 TMCO5BA8MYB1 307 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 CCP110O43303 1012 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 FAM193AP78312 1265 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 DPY19L2Q6NUT2 758 aa3.28□□□□□ -1.88
SCN1A-219ENST00000641575 ZFP91Q96JP5 570 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms