RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 KIF1AQ12756 1690 aa13.11□□□□□ -0.31
PDLIM5-223ENST00000627587 ANP32CO43423 234 aa13.1□□□□□ -0.31
PDLIM5-223ENST00000627587 XPCQ01831 940 aaPredicted RBP13.1□□□□□ -0.31
PDLIM5-223ENST00000627587 CENPJQ9HC77 1338 aaPredicted RBP13.1□□□□□ -0.31
PDLIM5-223ENST00000627587 TULP4Q9NRJ4 1543 aa13.1□□□□□ -0.31
PDLIM5-223ENST00000627587 NUTM2FA1L443 756 aa13.1□□□□□ -0.31
PDLIM5-223ENST00000627587 PHF8Q9UPP1 1060 aa13.09□□□□□ -0.31
PDLIM5-223ENST00000627587 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.09□□□□□ -0.31
PDLIM5-223ENST00000627587 FMN2Q9NZ56 1722 aa13.09□□□□□ -0.31
PDLIM5-223ENST00000627587 PRKRIP1Q9H875 184 aaPredicted RBP13.08□□□□□ -0.32
PDLIM5-223ENST00000627587 PLEKHH1Q9ULM0 1364 aa13.08□□□□□ -0.32
PDLIM5-223ENST00000627587 PER1O15534 1290 aaPredicted RBP13.08□□□□□ -0.32
PDLIM5-223ENST00000627587 HAP1P54257 671 aaPredicted RBP13.08□□□□□ -0.32
PDLIM5-223ENST00000627587 SLIT2O94813 1529 aa13.08□□□□□ -0.32
PDLIM5-223ENST00000627587 DLC1Q96QB1 1528 aa13.08□□□□□ -0.32
PDLIM5-223ENST00000627587 SBNO1A3KN83 1393 aa13.06□□□□□ -0.32
PDLIM5-223ENST00000627587 CCER2I3L3R5 266 aa13.06□□□□□ -0.32
PDLIM5-223ENST00000627587 SLC24A1O60721 1099 aa13.06□□□□□ -0.32
PDLIM5-223ENST00000627587 VPS72Q15906 364 aa13.06□□□□□ -0.32
PDLIM5-223ENST00000627587 ARHGEF10O15013 1369 aa13.05□□□□□ -0.32
PDLIM5-223ENST00000627587 TNS3Q68CZ2 1445 aa13.05□□□□□ -0.32
PDLIM5-223ENST00000627587 ONECUT3O60422 494 aaPredicted RBP13.05□□□□□ -0.32
PDLIM5-223ENST00000627587 BLMP54132 1417 aaPredicted RBP13.04□□□□□ -0.32
PDLIM5-223ENST00000627587 SF3B2Q13435 895 aaKnown RBP13.04□□□□□ -0.32
PDLIM5-223ENST00000627587 POGKQ9P215 609 aa13.04□□□□□ -0.32
PDLIM5-223ENST00000627587 CCDC184Q52MB2 194 aa13.04□□□□□ -0.32
PDLIM5-223ENST00000627587 CDCA8Q53HL2 280 aa13.04□□□□□ -0.32
PDLIM5-223ENST00000627587 USP32Q8NFA0 1604 aa13.03□□□□□ -0.32
PDLIM5-223ENST00000627587 PRAM1Q96QH2 718 aa13.03□□□□□ -0.32
PDLIM5-223ENST00000627587 PANK3Q9H999 370 aa13.03□□□□□ -0.32
PDLIM5-223ENST00000627587 ANKARQ7Z5J8 1434 aa13.03□□□□□ -0.32
PDLIM5-223ENST00000627587 SEPT12Q8IYM1 358 aa13.02□□□□□ -0.32
PDLIM5-223ENST00000627587 GLI3P10071 1580 aa13.02□□□□□ -0.33
PDLIM5-223ENST00000627587 YTHDC1Q96MU7 727 aaKnown RBP13.02□□□□□ -0.33
PDLIM5-223ENST00000627587 NWD2Q9ULI1 1742 aa13.01□□□□□ -0.33
PDLIM5-223ENST00000627587 LMOD2Q6P5Q4 547 aa13.01□□□□□ -0.33
PDLIM5-223ENST00000627587 CCDC9Q9Y3X0 531 aaKnown RBP13.01□□□□□ -0.33
PDLIM5-223ENST00000627587 RGPD8O14715 1765 aaPredicted RBP13□□□□□ -0.33
PDLIM5-223ENST00000627587 SAFB2Q14151 953 aaKnown RBP eCLIP13□□□□□ -0.33
PDLIM5-223ENST00000627587 KRT27Q7Z3Y8 459 aa12.99□□□□□ -0.33
PDLIM5-223ENST00000627587 CABLES1Q8TDN4 633 aa12.99□□□□□ -0.33
PDLIM5-223ENST00000627587 PARD3Q8TEW0 1356 aa12.99□□□□□ -0.33
PDLIM5-223ENST00000627587 NCBP3Q53F19 620 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-223ENST00000627587 FAM83GA6ND36 823 aa12.98□□□□□ -0.33
PDLIM5-223ENST00000627587 PMFBP1Q8TBY8 1022 aa12.97□□□□□ -0.33
PDLIM5-223ENST00000627587 PUS7Q96PZ0 661 aaKnown RBP12.97□□□□□ -0.33
PDLIM5-223ENST00000627587 BRWD3Q6RI45 1802 aa12.97□□□□□ -0.33
PDLIM5-223ENST00000627587 EVC2Q86UK5 1308 aa12.97□□□□□ -0.33
PDLIM5-223ENST00000627587 MINK1Q8N4C8 1332 aaPredicted RBP12.97□□□□□ -0.33
PDLIM5-223ENST00000627587 CARD14Q9BXL6 1004 aa12.97□□□□□ -0.33
PDLIM5-223ENST00000627587 ADGRB2O60241 1585 aa12.96□□□□□ -0.33
PDLIM5-223ENST00000627587 CNGB1Q14028 1251 aaPredicted RBP12.96□□□□□ -0.33
PDLIM5-223ENST00000627587 AMER1Q5JTC6 1135 aaPredicted RBP12.96□□□□□ -0.33
PDLIM5-223ENST00000627587 KTN1Q86UP2 1357 aaKnown RBP12.96□□□□□ -0.34
PDLIM5-223ENST00000627587 PLCH1Q4KWH8 1693 aa12.96□□□□□ -0.34
PDLIM5-223ENST00000627587 WASLO00401 505 aaPredicted RBP12.95□□□□□ -0.34
PDLIM5-223ENST00000627587 BAG6P46379 1132 aa12.95□□□□□ -0.34
PDLIM5-223ENST00000627587 CABP2Q9NPB3 220 aa12.95□□□□□ -0.34
PDLIM5-223ENST00000627587 DEFB132Q7Z7B7 95 aa12.95□□□□□ -0.34
PDLIM5-223ENST00000627587 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
PDLIM5-223ENST00000627587 BTG4Q9NY30 223 aa12.95□□□□□ -0.34
PDLIM5-223ENST00000627587 CD163L1Q9NR16 1453 aa12.94□□□□□ -0.34
PDLIM5-223ENST00000627587 NGDNQ8NEJ9 315 aaKnown RBP12.94□□□□□ -0.34
PDLIM5-223ENST00000627587 A0A0G2JS52 829 aa12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 PLEKHG5O94827 1062 aa12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 MYT1Q01538 1121 aa12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 NPC1L1Q9UHC9 1359 aa12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 ABCA3Q99758 1704 aa12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 COL14A1Q05707 1796 aaKnown RBP12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 RALBP1Q15311 655 aa12.93□□□□□ -0.34
PDLIM5-223ENST00000627587 FAM98CQ17RN3 349 aaKnown RBP12.92□□□□□ -0.34
PDLIM5-223ENST00000627587 CC2D1BQ5T0F9 858 aaKnown RBP12.92□□□□□ -0.34
PDLIM5-223ENST00000627587 TRPM3Q9HCF6 1732 aaPredicted RBP12.92□□□□□ -0.34
PDLIM5-223ENST00000627587 MYBBP1AQ9BQG0 1328 aaKnown RBP12.92□□□□□ -0.34
PDLIM5-223ENST00000627587 CDK19Q9BWU1 502 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 EP400Q96L91 3159 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 SPATA31A5Q5VU36 1347 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 SPATA31A7Q8IWB4 1347 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 TOPAZ1Q8N9V7 1692 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 ANKRD36BQ8N2N9 1353 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 MRS2Q9HD23 443 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 KNSTRNQ9Y448 316 aa12.91□□□□□ -0.34
PDLIM5-223ENST00000627587 ALS2Q96Q42 1657 aa12.9□□□□□ -0.34
PDLIM5-223ENST00000627587 PRR36Q9H6K5 1346 aa12.9□□□□□ -0.34
PDLIM5-223ENST00000627587 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
PDLIM5-223ENST00000627587 SRPK2P78362 688 aaKnown RBP12.9□□□□□ -0.34
PDLIM5-223ENST00000627587 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
PDLIM5-223ENST00000627587 NRAPQ86VF7 1730 aa12.9□□□□□ -0.34
PDLIM5-223ENST00000627587 A0A1W2PP64 1363 aa12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 NINLQ9Y2I6 1382 aa12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 CENPBP07199 599 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 TMC1Q8TDI8 760 aa12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 PRDM11Q9NQV5 511 aa12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 BRD4O60885 1362 aaPredicted RBP12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 NUDT16Q96DE0 195 aaKnown RBP12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 AKAP12Q02952 1782 aa12.89□□□□□ -0.35
PDLIM5-223ENST00000627587 ATP7BP35670 1465 aa12.88□□□□□ -0.35
PDLIM5-223ENST00000627587 ANKRD26Q9UPS8 1709 aa12.88□□□□□ -0.35
PDLIM5-223ENST00000627587 MON2Q7Z3U7 1717 aa12.87□□□□□ -0.35
PDLIM5-223ENST00000627587 LRP5O75197 1615 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms