RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ZBTB3Q9H5J0 574 aa7.99□□□□□ -1.13
SCN1A-208ENST00000625916 CFAP99D6REC4 459 aa7.98□□□□□ -1.13
SCN1A-208ENST00000625916 SPTLC1O15269 473 aa7.98□□□□□ -1.13
SCN1A-208ENST00000625916 HRCP23327 699 aa7.98□□□□□ -1.13
SCN1A-208ENST00000625916 CSPP1Q1MSJ5 1256 aa7.98□□□□□ -1.13
SCN1A-208ENST00000625916 LYPD8Q6UX82 237 aa7.98□□□□□ -1.13
SCN1A-208ENST00000625916 INSM1Q01101 510 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-208ENST00000625916 TRIM46Q7Z4K8 759 aa7.97□□□□□ -1.13
SCN1A-208ENST00000625916 RIC3Q7Z5B4 369 aa7.97□□□□□ -1.13
SCN1A-208ENST00000625916 WIPF1O43516 503 aa7.96□□□□□ -1.14
SCN1A-208ENST00000625916 NNTQ13423 1086 aa7.96□□□□□ -1.14
SCN1A-208ENST00000625916 FAM174AQ8TBP5 190 aa7.96□□□□□ -1.14
SCN1A-208ENST00000625916 CABLES1Q8TDN4 633 aa7.96□□□□□ -1.14
SCN1A-208ENST00000625916 SLC16A10Q8TF71 515 aa7.96□□□□□ -1.14
SCN1A-208ENST00000625916 TSC1Q92574 1164 aa7.96□□□□□ -1.14
SCN1A-208ENST00000625916 PRPF38BQ5VTL8 546 aaKnown RBP7.95□□□□□ -1.14
SCN1A-208ENST00000625916 MAP10Q9P2G4 905 aa7.95□□□□□ -1.14
SCN1A-208ENST00000625916 NUTM2BA6NNL0 878 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-208ENST00000625916 NUTM2EB1AL46 878 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-208ENST00000625916 ARID5BQ14865 1188 aa7.94□□□□□ -1.14
SCN1A-208ENST00000625916 AGERQ15109 404 aa7.94□□□□□ -1.14
SCN1A-208ENST00000625916 NUTM2DQ5VT03 806 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-208ENST00000625916 NUTM2AQ8IVF1 878 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-208ENST00000625916 MPNDQ8N594 471 aa7.94□□□□□ -1.14
SCN1A-208ENST00000625916 NXF1Q9UBU9 619 aaKnown RBP7.94□□□□□ -1.14
SCN1A-208ENST00000625916 WDR4P57081 412 aaKnown RBP7.93□□□□□ -1.14
SCN1A-208ENST00000625916 PDE4DQ08499 809 aa7.93□□□□□ -1.14
SCN1A-208ENST00000625916 FOXJ1Q92949 421 aa7.93□□□□□ -1.14
SCN1A-208ENST00000625916 STK17AQ9UEE5 414 aa7.93□□□□□ -1.14
SCN1A-208ENST00000625916 ADH1CP00326 375 aa7.92□□□□□ -1.14
SCN1A-208ENST00000625916 F12P00748 615 aaPredicted RBP7.92□□□□□ -1.14
SCN1A-208ENST00000625916 SCARF1Q14162 830 aa7.92□□□□□ -1.14
SCN1A-208ENST00000625916 LCE2CQ5TA81 110 aa7.92□□□□□ -1.14
SCN1A-208ENST00000625916 ZFP42Q96MM3 310 aa7.92□□□□□ -1.14
SCN1A-208ENST00000625916 MYSM1Q5VVJ2 828 aa7.91□□□□□ -1.14
SCN1A-208ENST00000625916 LIMD1Q9UGP4 676 aa7.91□□□□□ -1.14
SCN1A-208ENST00000625916 PER1O15534 1290 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-208ENST00000625916 TIMP2P16035 220 aa7.9□□□□□ -1.14
SCN1A-208ENST00000625916 QPCTQ16769 361 aa7.9□□□□□ -1.14
SCN1A-208ENST00000625916 MRPL14Q6P1L8 145 aaKnown RBP7.9□□□□□ -1.14
SCN1A-208ENST00000625916 VEGFBP49765 207 aa7.89□□□□□ -1.15
SCN1A-208ENST00000625916 BPHLQ86WA6 291 aaPredicted RBP7.89□□□□□ -1.15
SCN1A-208ENST00000625916 CDK15Q96Q40 435 aa7.89□□□□□ -1.15
SCN1A-208ENST00000625916 PURBQ96QR8 312 aaKnown RBP7.89□□□□□ -1.15
SCN1A-208ENST00000625916 SLC24A3Q9HC58 644 aa7.89□□□□□ -1.15
SCN1A-208ENST00000625916 NPAS3Q8IXF0 933 aa7.88□□□□□ -1.15
SCN1A-208ENST00000625916 ARMC2Q8NEN0 867 aa7.88□□□□□ -1.15
SCN1A-208ENST00000625916 HELBQ8NG08 1087 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-208ENST00000625916 IRF7Q92985 503 aa7.88□□□□□ -1.15
SCN1A-208ENST00000625916 LILRB3O75022 631 aa7.87□□□□□ -1.15
SCN1A-208ENST00000625916 ZIC2O95409 532 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-208ENST00000625916 NR5A1Q13285 461 aa7.87□□□□□ -1.15
SCN1A-208ENST00000625916 TUSC1Q2TAM9 212 aa7.87□□□□□ -1.15
SCN1A-208ENST00000625916 GMPRP36959 345 aa7.86□□□□□ -1.15
SCN1A-208ENST00000625916 C4orf48Q5BLP8 95 aa7.86□□□□□ -1.15
SCN1A-208ENST00000625916 KLF16Q9BXK1 252 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-208ENST00000625916 ZFAND3Q9H8U3 227 aa7.86□□□□□ -1.15
SCN1A-208ENST00000625916 H3BM21 787 aa7.85□□□□□ -1.15
SCN1A-208ENST00000625916 CLK2P49760 499 aaKnown RBP7.85□□□□□ -1.15
SCN1A-208ENST00000625916 NBPF14Q5TI25 921 aa7.85□□□□□ -1.15
SCN1A-208ENST00000625916 ITPKCQ96DU7 683 aa7.85□□□□□ -1.15
SCN1A-208ENST00000625916 SOBPA7XYQ1 873 aa7.84□□□□□ -1.15
SCN1A-208ENST00000625916 NR3C2P08235 984 aa7.84□□□□□ -1.15
SCN1A-208ENST00000625916 RTL5Q5HYW3 569 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-208ENST00000625916 C6orf118Q5T5N4 469 aa7.84□□□□□ -1.15
SCN1A-208ENST00000625916 RSPH6AQ9H0K4 717 aa7.84□□□□□ -1.15
SCN1A-208ENST00000625916 POLR3EQ9NVU0 708 aa7.84□□□□□ -1.15
SCN1A-208ENST00000625916 MAGEB6P1A0A0J9YX57 407 aa7.83□□□□□ -1.16
SCN1A-208ENST00000625916 FAM181BA6NEQ2 426 aa7.83□□□□□ -1.16
SCN1A-208ENST00000625916 UPP2O95045 317 aa7.83□□□□□ -1.16
SCN1A-208ENST00000625916 GRM5P41594 1212 aa7.83□□□□□ -1.16
SCN1A-208ENST00000625916 MAN1A2O60476 641 aa7.82□□□□□ -1.16
SCN1A-208ENST00000625916 BMP2P12643 396 aa7.82□□□□□ -1.16
SCN1A-208ENST00000625916 FSHRP23945 695 aa7.82□□□□□ -1.16
SCN1A-208ENST00000625916 VASH1Q7L8A9 365 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-208ENST00000625916 ERBB4Q15303 1308 aa7.81□□□□□ -1.16
SCN1A-208ENST00000625916 ZSCAN1Q8NBB4 408 aa7.81□□□□□ -1.16
SCN1A-208ENST00000625916 C1QTNF2Q9BXJ5 285 aa7.81□□□□□ -1.16
SCN1A-208ENST00000625916 CARD14Q9BXL6 1004 aa7.81□□□□□ -1.16
SCN1A-208ENST00000625916 SH3BP5LQ7L8J4 393 aa7.8□□□□□ -1.16
SCN1A-208ENST00000625916 SH3RF1Q7Z6J0 888 aa7.8□□□□□ -1.16
SCN1A-208ENST00000625916 ATP1B4Q9UN42 357 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-208ENST00000625916 LINC00528Q8N1L1 170 aa7.79□□□□□ -1.16
SCN1A-208ENST00000625916 MAP4K5Q9Y4K4 846 aa7.79□□□□□ -1.16
SCN1A-208ENST00000625916 CTDSPL2Q05D32 466 aa7.78□□□□□ -1.16
SCN1A-208ENST00000625916 TRMT44Q8IYL2 757 aaKnown RBP7.78□□□□□ -1.16
SCN1A-208ENST00000625916 MEIOBQ8N635 442 aa7.78□□□□□ -1.16
SCN1A-208ENST00000625916 GPKOWQ92917 476 aaPredicted RBP eCLIP7.78□□□□□ -1.16
SCN1A-208ENST00000625916 CCDC116Q8IYX3 515 aa7.77□□□□□ -1.17
SCN1A-208ENST00000625916 EMILIN1Q9Y6C2 1016 aa7.77□□□□□ -1.17
SCN1A-208ENST00000625916 ERFEQ4G0M1 354 aa7.76□□□□□ -1.17
SCN1A-208ENST00000625916 TSEN34Q9BSV6 310 aaKnown RBP7.76□□□□□ -1.17
SCN1A-208ENST00000625916 ARHGAP9Q9BRR9 750 aa7.75□□□□□ -1.17
SCN1A-208ENST00000625916 LORP23490 312 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-208ENST00000625916 LRRN4Q8WUT4 740 aa7.74□□□□□ -1.17
SCN1A-208ENST00000625916 FKBPLQ9UIM3 349 aa7.74□□□□□ -1.17
SCN1A-208ENST00000625916 SOS2Q07890 1332 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-208ENST00000625916 PPFIA3O75145 1194 aa7.73□□□□□ -1.17
SCN1A-208ENST00000625916 VSIG8P0DPA2 414 aa7.73□□□□□ -1.17
SCN1A-208ENST00000625916 SKIV2LQ15477 1246 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms