RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 HRCP23327 699 aa16.78■□□□□ 0.28
CPNE3-210ENST00000621245 PHRF1Q9P1Y6 1649 aaKnown RBP16.78■□□□□ 0.28
CPNE3-210ENST00000621245 ATAD2Q6PL18 1390 aa16.76■□□□□ 0.27
CPNE3-210ENST00000621245 GJD4Q96KN9 370 aaPredicted RBP16.75■□□□□ 0.27
CPNE3-210ENST00000621245 WASLO00401 505 aaPredicted RBP16.74■□□□□ 0.27
CPNE3-210ENST00000621245 PSME1Q06323 249 aa16.74■□□□□ 0.27
CPNE3-210ENST00000621245 LMOD2Q6P5Q4 547 aa16.74■□□□□ 0.27
CPNE3-210ENST00000621245 QRICH2Q9H0J4 1663 aa16.74■□□□□ 0.27
CPNE3-210ENST00000621245 COL14A1Q05707 1796 aaKnown RBP16.74■□□□□ 0.27
CPNE3-210ENST00000621245 AMER1Q5JTC6 1135 aaPredicted RBP16.73■□□□□ 0.27
CPNE3-210ENST00000621245 UNC5CLQ8IV45 518 aa16.73■□□□□ 0.27
CPNE3-210ENST00000621245 ARHGEF10O15013 1369 aa16.73■□□□□ 0.27
CPNE3-210ENST00000621245 DCAF8L1A6NGE4 600 aa16.72■□□□□ 0.27
CPNE3-210ENST00000621245 NBPF1Q3BBV0 1214 aa16.71■□□□□ 0.27
CPNE3-210ENST00000621245 EIF3AQ14152 1382 aaKnown RBP16.7■□□□□ 0.26
CPNE3-210ENST00000621245 HAP1P54257 671 aaPredicted RBP16.7■□□□□ 0.26
CPNE3-210ENST00000621245 TRPM1Q7Z4N2 1603 aa16.7■□□□□ 0.26
CPNE3-210ENST00000621245 FAM83GA6ND36 823 aa16.69■□□□□ 0.26
CPNE3-210ENST00000621245 ATF5Q9Y2D1 282 aaPredicted RBP16.68■□□□□ 0.26
CPNE3-210ENST00000621245 NUDT16Q96DE0 195 aaKnown RBP16.67■□□□□ 0.26
CPNE3-210ENST00000621245 NRKQ7Z2Y5 1582 aa16.67■□□□□ 0.26
CPNE3-210ENST00000621245 GPRASP1Q5JY77 1395 aa16.66■□□□□ 0.26
CPNE3-210ENST00000621245 VPS72Q15906 364 aa16.66■□□□□ 0.26
CPNE3-210ENST00000621245 STAC3Q96MF2 364 aa16.66■□□□□ 0.26
CPNE3-210ENST00000621245 CDK19Q9BWU1 502 aa16.66■□□□□ 0.26
CPNE3-210ENST00000621245 THSD7AQ9UPZ6 1657 aa16.65■□□□□ 0.26
CPNE3-210ENST00000621245 NGDNQ8NEJ9 315 aaKnown RBP16.65■□□□□ 0.26
CPNE3-210ENST00000621245 PAK3O75914 559 aaPredicted RBP16.64■□□□□ 0.25
CPNE3-210ENST00000621245 SEPT12Q8IYM1 358 aa16.64■□□□□ 0.25
CPNE3-210ENST00000621245 SIN3AQ96ST3 1273 aa16.63■□□□□ 0.25
CPNE3-210ENST00000621245 BTG4Q9NY30 223 aa16.63■□□□□ 0.25
CPNE3-210ENST00000621245 CCDC9Q9Y3X0 531 aaKnown RBP16.63■□□□□ 0.25
CPNE3-210ENST00000621245 POLR3AO14802 1390 aaPredicted RBP16.63■□□□□ 0.25
CPNE3-210ENST00000621245 NUTM2GQ5VZR2 741 aa16.62■□□□□ 0.25
CPNE3-210ENST00000621245 LMO7Q8WWI1 1683 aa16.62■□□□□ 0.25
CPNE3-210ENST00000621245 TNS1Q9HBL0 1735 aaKnown RBP16.62■□□□□ 0.25
CPNE3-210ENST00000621245 ACEP12821 1306 aa16.61■□□□□ 0.25
CPNE3-210ENST00000621245 L3MBTL2Q969R5 705 aa16.6■□□□□ 0.25
CPNE3-210ENST00000621245 KIAA0232Q92628 1395 aa16.6■□□□□ 0.25
CPNE3-210ENST00000621245 PIK3C2AO00443 1686 aa16.59■□□□□ 0.25
CPNE3-210ENST00000621245 FAM98CQ17RN3 349 aaKnown RBP16.59■□□□□ 0.25
CPNE3-210ENST00000621245 BLMP54132 1417 aaPredicted RBP16.59■□□□□ 0.25
CPNE3-210ENST00000621245 PPIP5K1Q6PFW1 1433 aa16.59■□□□□ 0.25
CPNE3-210ENST00000621245 ONECUT3O60422 494 aaPredicted RBP16.58■□□□□ 0.24
CPNE3-210ENST00000621245 CHRNA2Q15822 529 aa16.58■□□□□ 0.24
CPNE3-210ENST00000621245 DEFB132Q7Z7B7 95 aa16.58■□□□□ 0.24
CPNE3-210ENST00000621245 CABP2Q9NPB3 220 aa16.58■□□□□ 0.24
CPNE3-210ENST00000621245 RGPD1P0DJD0 1748 aa16.58■□□□□ 0.24
CPNE3-210ENST00000621245 AKAP12Q02952 1782 aa16.58■□□□□ 0.24
CPNE3-210ENST00000621245 CENPJQ9HC77 1338 aaPredicted RBP16.57■□□□□ 0.24
CPNE3-210ENST00000621245 NBPF8Q3BBV2 869 aa16.57■□□□□ 0.24
CPNE3-210ENST00000621245 CAMTA1Q9Y6Y1 1673 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 SPATA31A5Q5VU36 1347 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 SPATA31A7Q8IWB4 1347 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 PLEKHG3A1L390 1219 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 FAM182BQ5T319 152 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 PRDM11Q9NQV5 511 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 CCDC61Q9Y6R9 512 aa16.56■□□□□ 0.24
CPNE3-210ENST00000621245 ZC3H6P61129 1189 aaKnown RBP16.55■□□□□ 0.24
CPNE3-210ENST00000621245 KRT27Q7Z3Y8 459 aa16.55■□□□□ 0.24
CPNE3-210ENST00000621245 RGPD5Q99666 1765 aa16.54■□□□□ 0.24
CPNE3-210ENST00000621245 A0A0G2JS52 829 aa16.54■□□□□ 0.24
CPNE3-210ENST00000621245 SRPK2P78362 688 aaKnown RBP16.54■□□□□ 0.24
CPNE3-210ENST00000621245 MYT1Q01538 1121 aa16.54■□□□□ 0.24
CPNE3-210ENST00000621245 USP19O94966 1318 aa16.53■□□□□ 0.24
CPNE3-210ENST00000621245 NEUROD1Q13562 356 aa16.53■□□□□ 0.24
CPNE3-210ENST00000621245 U3KPZ7 1027 aaPredicted RBP16.53■□□□□ 0.24
CPNE3-210ENST00000621245 COL18A1P39060 1754 aa16.53■□□□□ 0.24
CPNE3-210ENST00000621245 WNK3Q9BYP7 1800 aa16.52■□□□□ 0.24
CPNE3-210ENST00000621245 SAMD1Q6SPF0 538 aaPredicted RBP16.52■□□□□ 0.24
CPNE3-210ENST00000621245 CCDC125Q86Z20 511 aa16.52■□□□□ 0.24
CPNE3-210ENST00000621245 SPATA31A1Q5TZJ5 1347 aa16.51■□□□□ 0.23
CPNE3-210ENST00000621245 SLIT3O75094 1523 aa16.51■□□□□ 0.23
CPNE3-210ENST00000621245 MON2Q7Z3U7 1717 aa16.51■□□□□ 0.23
CPNE3-210ENST00000621245 STRN4Q9NRL3 753 aa16.51■□□□□ 0.23
CPNE3-210ENST00000621245 USP6P35125 1406 aa16.51■□□□□ 0.23
CPNE3-210ENST00000621245 SSH2Q76I76 1423 aa16.51■□□□□ 0.23
CPNE3-210ENST00000621245 ABTB2Q8N961 1025 aa16.5■□□□□ 0.23
CPNE3-210ENST00000621245 ZRANB1Q9UGI0 708 aa16.49■□□□□ 0.23
CPNE3-210ENST00000621245 PARP4Q9UKK3 1724 aaKnown RBP16.49■□□□□ 0.23
CPNE3-210ENST00000621245 ROCK2O75116 1388 aaKnown RBP16.49■□□□□ 0.23
CPNE3-210ENST00000621245 SLC24A1O60721 1099 aa16.48■□□□□ 0.23
CPNE3-210ENST00000621245 CABP1Q9NZU7 370 aa16.48■□□□□ 0.23
CPNE3-210ENST00000621245 CPDO75976 1380 aa16.48■□□□□ 0.23
CPNE3-210ENST00000621245 COL5A2P05997 1499 aaPredicted RBP16.48■□□□□ 0.23
CPNE3-210ENST00000621245 LRRC37A3O60309 1634 aa16.46■□□□□ 0.23
CPNE3-210ENST00000621245 LARP1Q6PKG0 1096 aaKnown RBP16.46■□□□□ 0.23
CPNE3-210ENST00000621245 USP35Q9P2H5 1018 aa16.46■□□□□ 0.23
CPNE3-210ENST00000621245 RREB1Q92766 1687 aa16.46■□□□□ 0.23
CPNE3-210ENST00000621245 SBF2Q86WG5 1849 aa16.45■□□□□ 0.22
CPNE3-210ENST00000621245 PEAK1Q9H792 1746 aa16.45■□□□□ 0.22
CPNE3-210ENST00000621245 GCP02774 474 aa16.44■□□□□ 0.22
CPNE3-210ENST00000621245 NUP188Q5SRE5 1749 aa16.44■□□□□ 0.22
CPNE3-210ENST00000621245 LRP5O75197 1615 aa16.44■□□□□ 0.22
CPNE3-210ENST00000621245 SF3B2Q13435 895 aaKnown RBP16.43■□□□□ 0.22
CPNE3-210ENST00000621245 NFAT5O94916 1531 aa16.43■□□□□ 0.22
CPNE3-210ENST00000621245 USP54Q70EL1 1684 aa16.43■□□□□ 0.22
CPNE3-210ENST00000621245 EVC2Q86UK5 1308 aa16.43■□□□□ 0.22
CPNE3-210ENST00000621245 ZBTB7CA1YPR0 619 aa16.42■□□□□ 0.22
CPNE3-210ENST00000621245 EN1Q05925 392 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms