RNA–Protein interactions for RNA: ENST00000620854.4

NEDD9-216, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5 BASIC

Gene NEDD9, Length 4,086 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-216ENST00000620854 CHD1O14646 1710 aa8.63□□□□□ -1.03
NEDD9-216ENST00000620854 CHD1LQ86WJ1 897 aa8.62□□□□□ -1.03
NEDD9-216ENST00000620854 TXNDC2Q86VQ3 553 aa8.62□□□□□ -1.03
NEDD9-216ENST00000620854 TRAPPC8Q9Y2L5 1435 aa8.62□□□□□ -1.03
NEDD9-216ENST00000620854 TMPOP42166 694 aaKnown RBP8.61□□□□□ -1.03
NEDD9-216ENST00000620854 ZNF518AQ6AHZ1 1483 aa8.61□□□□□ -1.03
NEDD9-216ENST00000620854 XPCQ01831 940 aaPredicted RBP8.61□□□□□ -1.03
NEDD9-216ENST00000620854 CASC1Q6TDU7 716 aa8.61□□□□□ -1.03
NEDD9-216ENST00000620854 NINLQ9Y2I6 1382 aa8.61□□□□□ -1.03
NEDD9-216ENST00000620854 PKP1Q13835 747 aa8.61□□□□□ -1.03
NEDD9-216ENST00000620854 NOL8Q76FK4 1167 aaKnown RBP8.61□□□□□ -1.03
NEDD9-216ENST00000620854 THEMISQ8N1K5 641 aaPredicted RBP8.61□□□□□ -1.03
NEDD9-216ENST00000620854 RNF214Q8ND24 703 aa8.61□□□□□ -1.03
NEDD9-216ENST00000620854 TBC1D9Q6ZT07 1266 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.6□□□□□ -1.03
NEDD9-216ENST00000620854 POLR3AO14802 1390 aaPredicted RBP8.6□□□□□ -1.03
NEDD9-216ENST00000620854 SAMD9LQ8IVG5 1584 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 HMOX1P09601 288 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 CALD1Q05682 793 aaKnown RBP8.6□□□□□ -1.03
NEDD9-216ENST00000620854 SMC5Q8IY18 1101 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 ZBTB40Q9NUA8 1239 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 K7ELQ4 463 aaPredicted RBP8.6□□□□□ -1.03
NEDD9-216ENST00000620854 RAB3GAP1Q15042 981 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 RBM27Q9P2N5 1060 aaKnown RBP8.6□□□□□ -1.03
NEDD9-216ENST00000620854 RPGRIP1LQ68CZ1 1315 aa8.6□□□□□ -1.03
NEDD9-216ENST00000620854 PRPF40AO75400 957 aaKnown RBP8.59□□□□□ -1.03
NEDD9-216ENST00000620854 HDAC1Q13547 482 aaPredicted RBP8.59□□□□□ -1.03
NEDD9-216ENST00000620854 IPO8O15397 1037 aaKnown RBP8.59□□□□□ -1.03
NEDD9-216ENST00000620854 NUCB1Q02818 461 aa8.59□□□□□ -1.03
NEDD9-216ENST00000620854 AAMPQ13685 434 aa8.59□□□□□ -1.03
NEDD9-216ENST00000620854 C16orf71Q8IYS4 520 aaPredicted RBP8.59□□□□□ -1.03
NEDD9-216ENST00000620854 TRIM35Q9UPQ4 493 aa8.59□□□□□ -1.03
NEDD9-216ENST00000620854 BAG4O95429 457 aaKnown RBP8.59□□□□□ -1.04
NEDD9-216ENST00000620854 ATAD2Q6PL18 1390 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 ABCA8O94911 1581 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 DUOX2Q9NRD8 1548 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 SKOR2Q2VWA4 1001 aaPredicted RBP8.58□□□□□ -1.04
NEDD9-216ENST00000620854 KIF2CQ99661 725 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 NPC1L1Q9UHC9 1359 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 RBM25P49756 843 aaKnown RBP8.58□□□□□ -1.04
NEDD9-216ENST00000620854 ZSCAN30Q86W11 494 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 TSPYL6Q8N831 410 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 AK9Q5TCS8 1911 aa8.58□□□□□ -1.04
NEDD9-216ENST00000620854 ERVK-7P63135 1459 aa8.57□□□□□ -1.04
NEDD9-216ENST00000620854 PHF23Q9BUL5 403 aaPredicted RBP8.57□□□□□ -1.04
NEDD9-216ENST00000620854 PPP6R1Q9UPN7 881 aa8.57□□□□□ -1.04
NEDD9-216ENST00000620854 FBXO31Q5XUX0 539 aaPredicted RBP8.57□□□□□ -1.04
NEDD9-216ENST00000620854 PRIM1P49642 420 aaKnown RBP8.57□□□□□ -1.04
NEDD9-216ENST00000620854 CCDC173Q0VFZ6 552 aa8.57□□□□□ -1.04
NEDD9-216ENST00000620854 IDI1Q13907 227 aa8.57□□□□□ -1.04
NEDD9-216ENST00000620854 ZGPATQ8N5A5 531 aaKnown RBP8.57□□□□□ -1.04
NEDD9-216ENST00000620854 OS9Q13438 667 aaPredicted RBP8.56□□□□□ -1.04
NEDD9-216ENST00000620854 SNX21Q969T3 373 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 MYO5CQ9NQX4 1742 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 EIF2AK4Q9P2K8 1649 aaKnown RBP8.56□□□□□ -1.04
NEDD9-216ENST00000620854 KCNJ4P48050 445 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 RBSNQ9H1K0 784 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 UHRF1BP1LA0JNW5 1464 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 CFAP65Q6ZU64 1925 aaKnown RBP8.56□□□□□ -1.04
NEDD9-216ENST00000620854 UGGT1Q9NYU2 1555 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 RTEL1-TNFRSF6BF6WH68 1400 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 PRDM10Q9NQV6 1147 aa8.56□□□□□ -1.04
NEDD9-216ENST00000620854 SMARCA5O60264 1052 aaPredicted RBP8.55□□□□□ -1.04
NEDD9-216ENST00000620854 OTUD7AQ8TE49 926 aaPredicted RBP8.55□□□□□ -1.04
NEDD9-216ENST00000620854 PRAM1Q96QH2 718 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 SYCE3A1L190 88 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 PRKAR2BP31323 418 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 DDIT3P35638 169 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 CCDC27Q2M243 656 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 BMP2KLQ5H9B9 411 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 PDCL3Q9H2J4 239 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 TPM2P07951 284 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 ZSCAN23Q3MJ62 389 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 COG3Q96JB2 828 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 SLC26A8Q96RN1 970 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 CIZ1Q9ULV3 898 aaPredicted RBP8.55□□□□□ -1.04
NEDD9-216ENST00000620854 NAP1L2Q9ULW6 460 aaPredicted RBP8.55□□□□□ -1.04
NEDD9-216ENST00000620854 SYNMO15061 1565 aa8.55□□□□□ -1.04
NEDD9-216ENST00000620854 DCTN1Q14203 1278 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 ZRSR1Q15695 479 aaKnown RBP8.54□□□□□ -1.04
NEDD9-216ENST00000620854 JARID2Q92833 1246 aaPredicted RBP8.54□□□□□ -1.04
NEDD9-216ENST00000620854 DIAPH1O60610 1272 aaKnown RBP8.54□□□□□ -1.04
NEDD9-216ENST00000620854 AMPHP49418 695 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 CEBPAP49715 358 aaPredicted RBP8.54□□□□□ -1.04
NEDD9-216ENST00000620854 FGD1P98174 961 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 KLHL40Q2TBA0 621 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 PTPRTO14522 1441 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 ARHGEF5Q12774 1597 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 CDC42BPBQ9Y5S2 1711 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 UQCRHLA0A096LP55 91 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 UQCRHP07919 91 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 ANKLE2Q86XL3 938 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 SIRT2Q8IXJ6 389 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 TSC1Q92574 1164 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 ISY1Q9ULR0 285 aaKnown RBP8.54□□□□□ -1.04
NEDD9-216ENST00000620854 KIF16BQ96L93 1317 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 CLASP1Q7Z460 1538 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 ATP10AO60312 1499 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 NOS1P29475 1434 aa8.54□□□□□ -1.04
NEDD9-216ENST00000620854 ZBTB7BO15156 539 aaPredicted RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms