RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 PDCL3Q9H2J4 239 aa17.23■□□□□ 0.35
PTPN9-206ENST00000618819 PSMA5P28066 241 aa17.23■□□□□ 0.35
PTPN9-206ENST00000618819 CCDC113Q9H0I3 377 aa17.23■□□□□ 0.35
PTPN9-206ENST00000618819 SEPT11Q9NVA2 429 aaKnown RBP17.23■□□□□ 0.35
PTPN9-206ENST00000618819 POLR3GO15318 223 aaPredicted RBP17.23■□□□□ 0.35
PTPN9-206ENST00000618819 TTC5Q8N0Z6 440 aa17.22■□□□□ 0.35
PTPN9-206ENST00000618819 ESPNB1AK53 854 aa17.22■□□□□ 0.35
PTPN9-206ENST00000618819 RNF187Q5TA31 235 aaPredicted RBP17.22■□□□□ 0.35
PTPN9-206ENST00000618819 IKQ13123 557 aaPredicted RBP17.21■□□□□ 0.35
PTPN9-206ENST00000618819 STK3Q13188 491 aa17.21■□□□□ 0.35
PTPN9-206ENST00000618819 API5Q9BZZ5 524 aaKnown RBP17.21■□□□□ 0.35
PTPN9-206ENST00000618819 CEP63Q96MT8 703 aa17.21■□□□□ 0.35
PTPN9-206ENST00000618819 ROCK1Q13464 1354 aa17.21■□□□□ 0.35
PTPN9-206ENST00000618819 KIF27Q86VH2 1401 aa17.21■□□□□ 0.34
PTPN9-206ENST00000618819 RIPK4P57078 832 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 PRKRIP1Q9H875 184 aaPredicted RBP17.2■□□□□ 0.34
PTPN9-206ENST00000618819 FILIP1Q7Z7B0 1213 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 ZNF396Q96N95 335 aaPredicted RBP17.2■□□□□ 0.34
PTPN9-206ENST00000618819 SLC26A8Q96RN1 970 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 ZHX3Q9H4I2 956 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 NINLQ9Y2I6 1382 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 ST20-MTHFSA0A0A6YYL1 179 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 TXLNAP40222 546 aa17.2■□□□□ 0.34
PTPN9-206ENST00000618819 KANK4Q5T7N3 995 aaPredicted RBP17.2■□□□□ 0.34
PTPN9-206ENST00000618819 FSD1Q9BTV5 496 aa17.19■□□□□ 0.34
PTPN9-206ENST00000618819 UBXN4Q92575 508 aa17.19■□□□□ 0.34
PTPN9-206ENST00000618819 KIF7Q2M1P5 1343 aa17.19■□□□□ 0.34
PTPN9-206ENST00000618819 GTF2F1P35269 517 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTPN9-206ENST00000618819 IQCEQ6IPM2 695 aa17.18■□□□□ 0.34
PTPN9-206ENST00000618819 CNTROBQ8N137 903 aa17.18■□□□□ 0.34
PTPN9-206ENST00000618819 CRACR2AQ9BSW2 395 aa17.18■□□□□ 0.34
PTPN9-206ENST00000618819 ME1P48163 572 aa17.18■□□□□ 0.34
PTPN9-206ENST00000618819 BCCIPQ9P287 314 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTPN9-206ENST00000618819 FHAD1B1AJZ9 1412 aa17.18■□□□□ 0.34
PTPN9-206ENST00000618819 CCDC97Q96F63 343 aaPredicted RBP17.17■□□□□ 0.34
PTPN9-206ENST00000618819 LUC7LQ9NQ29 371 aaKnown RBP17.17■□□□□ 0.34
PTPN9-206ENST00000618819 WRNQ14191 1432 aaPredicted RBP eCLIP17.17■□□□□ 0.34
PTPN9-206ENST00000618819 PIP4K2AP48426 406 aaPredicted RBP17.17■□□□□ 0.34
PTPN9-206ENST00000618819 COG3Q96JB2 828 aa17.16■□□□□ 0.34
PTPN9-206ENST00000618819 KIAA1328Q86T90 577 aa17.16■□□□□ 0.34
PTPN9-206ENST00000618819 CALCOCO1Q9P1Z2 691 aa17.16■□□□□ 0.34
PTPN9-206ENST00000618819 AIMP1Q12904 312 aaKnown RBP17.15■□□□□ 0.34
PTPN9-206ENST00000618819 DDX58O95786 925 aaKnown RBP17.15■□□□□ 0.34
PTPN9-206ENST00000618819 TMX1Q9H3N1 280 aa17.15■□□□□ 0.34
PTPN9-206ENST00000618819 CBFA2T2O43439 604 aa17.14■□□□□ 0.33
PTPN9-206ENST00000618819 CCDC91Q7Z6B0 441 aa17.14■□□□□ 0.33
PTPN9-206ENST00000618819 SYTL4Q96C24 671 aaPredicted RBP17.14■□□□□ 0.33
PTPN9-206ENST00000618819 SRRTQ9BXP5 876 aaKnown RBP17.14■□□□□ 0.33
PTPN9-206ENST00000618819 SPDYE4A6NLX3 237 aa17.14■□□□□ 0.33
PTPN9-206ENST00000618819 DDX11Q96FC9 970 aa17.14■□□□□ 0.33
PTPN9-206ENST00000618819 UBE4AQ14139 1066 aa17.14■□□□□ 0.33
PTPN9-206ENST00000618819 SSR1P43307 286 aaKnown RBP17.13■□□□□ 0.33
PTPN9-206ENST00000618819 HSP90AB4PQ58FF6 505 aa17.13■□□□□ 0.33
PTPN9-206ENST00000618819 DACH1Q9UI36 760 aa17.13■□□□□ 0.33
PTPN9-206ENST00000618819 PDCP20941 246 aa17.13■□□□□ 0.33
PTPN9-206ENST00000618819 CCDC148Q8NFR7 591 aa17.12■□□□□ 0.33
PTPN9-206ENST00000618819 SART3Q15020 963 aaKnown RBP17.12■□□□□ 0.33
PTPN9-206ENST00000618819 WWC2Q6AWC2 1192 aa17.12■□□□□ 0.33
PTPN9-206ENST00000618819 SERPINA10Q9UK55 444 aa17.12■□□□□ 0.33
PTPN9-206ENST00000618819 EPB41L2O43491 1005 aaKnown RBP17.12■□□□□ 0.33
PTPN9-206ENST00000618819 ZMYND15Q9H091 742 aa17.12■□□□□ 0.33
PTPN9-206ENST00000618819 GOPCQ9HD26 462 aa17.12■□□□□ 0.33
PTPN9-206ENST00000618819 STIM1Q13586 685 aa17.12■□□□□ 0.33
PTPN9-206ENST00000618819 C1orf115Q9H7X2 142 aa17.11■□□□□ 0.33
PTPN9-206ENST00000618819 ARHGAP29Q52LW3 1261 aa17.11■□□□□ 0.33
PTPN9-206ENST00000618819 TAF4BQ92750 862 aa17.11■□□□□ 0.33
PTPN9-206ENST00000618819 EVA1CP58658 441 aa17.11■□□□□ 0.33
PTPN9-206ENST00000618819 TXLNBQ8N3L3 684 aa17.11■□□□□ 0.33
PTPN9-206ENST00000618819 TSPYL4Q9UJ04 414 aa17.11■□□□□ 0.33
PTPN9-206ENST00000618819 TRHP20396 242 aaPredicted RBP17.11■□□□□ 0.33
PTPN9-206ENST00000618819 XPCQ01831 940 aaPredicted RBP17.11■□□□□ 0.33
PTPN9-206ENST00000618819 RIC3Q7Z5B4 369 aa17.1■□□□□ 0.33
PTPN9-206ENST00000618819 UBTFL1P0CB47 393 aaPredicted RBP17.1■□□□□ 0.33
PTPN9-206ENST00000618819 DHX8Q14562 1220 aaKnown RBP17.1■□□□□ 0.33
PTPN9-206ENST00000618819 PUS7Q96PZ0 661 aaKnown RBP17.1■□□□□ 0.33
PTPN9-206ENST00000618819 PDZRN3Q9UPQ7 1066 aa17.1■□□□□ 0.33
PTPN9-206ENST00000618819 PPP4R3BQ5MIZ7 849 aa17.1■□□□□ 0.33
PTPN9-206ENST00000618819 CASQ1P31415 396 aa17.1■□□□□ 0.33
PTPN9-206ENST00000618819 GTF2A1P52655 376 aaPredicted RBP17.1■□□□□ 0.33
PTPN9-206ENST00000618819 CAMK4Q16566 473 aa17.1■□□□□ 0.33
PTPN9-206ENST00000618819 SYCE3A1L190 88 aa17.09■□□□□ 0.33
PTPN9-206ENST00000618819 DIAPH1O60610 1272 aaKnown RBP17.09■□□□□ 0.33
PTPN9-206ENST00000618819 ZSCAN30Q86W11 494 aa17.09■□□□□ 0.33
PTPN9-206ENST00000618819 MAP4K4O95819 1239 aaPredicted RBP17.09■□□□□ 0.33
PTPN9-206ENST00000618819 UPF3BQ9BZI7 483 aaKnown RBP17.09■□□□□ 0.33
PTPN9-206ENST00000618819 PTPN14Q15678 1187 aa17.09■□□□□ 0.33
PTPN9-206ENST00000618819 DNA2P51530 1060 aa17.08■□□□□ 0.33
PTPN9-206ENST00000618819 JAKMIP3Q5VZ66 844 aa17.08■□□□□ 0.33
PTPN9-206ENST00000618819 MCM2P49736 904 aa17.08■□□□□ 0.32
PTPN9-206ENST00000618819 URI1O94763 535 aaPredicted RBP17.08■□□□□ 0.32
PTPN9-206ENST00000618819 HMOX1P09601 288 aa17.08■□□□□ 0.32
PTPN9-206ENST00000618819 JMYQ8N9B5 988 aa17.08■□□□□ 0.32
PTPN9-206ENST00000618819 K7ELQ4 463 aaPredicted RBP17.07■□□□□ 0.32
PTPN9-206ENST00000618819 MNAT1P51948 309 aa17.07■□□□□ 0.32
PTPN9-206ENST00000618819 KRT85P78386 507 aa17.07■□□□□ 0.32
PTPN9-206ENST00000618819 IFFO1Q0D2I5 559 aa17.07■□□□□ 0.32
PTPN9-206ENST00000618819 BBXQ8WY36 941 aaPredicted RBP17.07■□□□□ 0.32
PTPN9-206ENST00000618819 NUP62CLQ9H1M0 184 aa17.07■□□□□ 0.32
PTPN9-206ENST00000618819 SPATA32Q96LK8 384 aa17.07■□□□□ 0.32
PTPN9-206ENST00000618819 RAI14Q9P0K7 980 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms