RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SOS2Q07890 1332 aaPredicted RBP27.38■■□□□ 1.97
UPF3A-211ENST00000618700 TRPM3Q9HCF6 1732 aaPredicted RBP27.37■■□□□ 1.97
UPF3A-211ENST00000618700 ANKRD36BQ8N2N9 1353 aa27.36■■□□□ 1.97
UPF3A-211ENST00000618700 NRKQ7Z2Y5 1582 aa27.36■■□□□ 1.97
UPF3A-211ENST00000618700 USP6P35125 1406 aa27.36■■□□□ 1.97
UPF3A-211ENST00000618700 POLR3GLQ9BT43 218 aa27.36■■□□□ 1.97
UPF3A-211ENST00000618700 A0A1W2PP64 1363 aa27.35■■□□□ 1.97
UPF3A-211ENST00000618700 SSH2Q76I76 1423 aa27.33■■□□□ 1.97
UPF3A-211ENST00000618700 XPCQ01831 940 aaPredicted RBP27.33■■□□□ 1.97
UPF3A-211ENST00000618700 KRT28Q7Z3Y7 464 aa27.33■■□□□ 1.97
UPF3A-211ENST00000618700 BRD4O60885 1362 aaPredicted RBP27.33■■□□□ 1.97
UPF3A-211ENST00000618700 PSME1Q06323 249 aa27.32■■□□□ 1.96
UPF3A-211ENST00000618700 ZNF692Q9BU19 519 aaPredicted RBP27.32■■□□□ 1.96
UPF3A-211ENST00000618700 TERF2IPQ9NYB0 399 aa27.32■■□□□ 1.96
UPF3A-211ENST00000618700 SBNO1A3KN83 1393 aa27.32■■□□□ 1.96
UPF3A-211ENST00000618700 KTN1Q86UP2 1357 aaKnown RBP27.31■■□□□ 1.96
UPF3A-211ENST00000618700 MED1Q15648 1581 aaPredicted RBP27.31■■□□□ 1.96
UPF3A-211ENST00000618700 HDGFL2Q7Z4V5 671 aaPredicted RBP27.3■■□□□ 1.96
UPF3A-211ENST00000618700 TNS3Q68CZ2 1445 aa27.29■■□□□ 1.96
UPF3A-211ENST00000618700 ALS2Q96Q42 1657 aa27.29■■□□□ 1.96
UPF3A-211ENST00000618700 EDC4Q6P2E9 1401 aaKnown RBP27.28■■□□□ 1.96
UPF3A-211ENST00000618700 SPATA31A3Q5VYP0 1347 aa27.26■■□□□ 1.95
UPF3A-211ENST00000618700 LRRC59Q96AG4 307 aaKnown RBP27.24■■□□□ 1.95
UPF3A-211ENST00000618700 ZNF316A6NFI3 1004 aaPredicted RBP27.23■■□□□ 1.95
UPF3A-211ENST00000618700 SHPRHQ149N8 1683 aa27.23■■□□□ 1.95
UPF3A-211ENST00000618700 TTC21BQ7Z4L5 1316 aa27.22■■□□□ 1.95
UPF3A-211ENST00000618700 PIK3C2AO00443 1686 aa27.22■■□□□ 1.95
UPF3A-211ENST00000618700 CARD14Q9BXL6 1004 aa27.22■■□□□ 1.95
UPF3A-211ENST00000618700 NSD3Q9BZ95 1437 aa27.22■■□□□ 1.95
UPF3A-211ENST00000618700 PNPLA6Q8IY17 1366 aa27.22■■□□□ 1.95
UPF3A-211ENST00000618700 TTC21AQ8NDW8 1320 aa27.21■■□□□ 1.95
UPF3A-211ENST00000618700 COL22A1Q8NFW1 1626 aaPredicted RBP27.21■■□□□ 1.95
UPF3A-211ENST00000618700 PANK3Q9H999 370 aa27.21■■□□□ 1.95
UPF3A-211ENST00000618700 U3KPZ7 1027 aaPredicted RBP27.21■■□□□ 1.95
UPF3A-211ENST00000618700 ARHGEF10O15013 1369 aa27.21■■□□□ 1.95
UPF3A-211ENST00000618700 JCADQ9P266 1359 aa27.2■■□□□ 1.94
UPF3A-211ENST00000618700 PAK3O75914 559 aaPredicted RBP27.19■■□□□ 1.94
UPF3A-211ENST00000618700 USP54Q70EL1 1684 aa27.17■■□□□ 1.94
UPF3A-211ENST00000618700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.15■■□□□ 1.94
UPF3A-211ENST00000618700 MARF1Q9Y4F3 1742 aaKnown RBP27.15■■□□□ 1.94
UPF3A-211ENST00000618700 CRYBG1Q9Y4K1 1723 aa27.15■■□□□ 1.94
UPF3A-211ENST00000618700 KIF20BQ96Q89 1820 aa27.13■■□□□ 1.93
UPF3A-211ENST00000618700 ABCA3Q99758 1704 aa27.13■■□□□ 1.93
UPF3A-211ENST00000618700 USP31Q70CQ4 1352 aa27.13■■□□□ 1.93
UPF3A-211ENST00000618700 ABTB2Q8N961 1025 aa27.12■■□□□ 1.93
UPF3A-211ENST00000618700 OVOS2A0A0J9YW53 1432 aa27.11■■□□□ 1.93
UPF3A-211ENST00000618700 OVOS2Q6IE36 1432 aa27.11■■□□□ 1.93
UPF3A-211ENST00000618700 PER1O15534 1290 aaPredicted RBP27.11■■□□□ 1.93
UPF3A-211ENST00000618700 LMOD2Q6P5Q4 547 aa27.11■■□□□ 1.93
UPF3A-211ENST00000618700 NME9Q86XW9 330 aa27.11■■□□□ 1.93
UPF3A-211ENST00000618700 USP19O94966 1318 aa27.11■■□□□ 1.93
UPF3A-211ENST00000618700 PHRF1Q9P1Y6 1649 aaKnown RBP27.1■■□□□ 1.93
UPF3A-211ENST00000618700 C1QBPQ07021 282 aaKnown RBP27.1■■□□□ 1.93
UPF3A-211ENST00000618700 SLIT3O75094 1523 aa27.1■■□□□ 1.93
UPF3A-211ENST00000618700 CGNL1Q0VF96 1302 aa27.09■■□□□ 1.93
UPF3A-211ENST00000618700 FYB1O15117 783 aa27.08■■□□□ 1.93
UPF3A-211ENST00000618700 NLRP6P59044 892 aa27.07■■□□□ 1.92
UPF3A-211ENST00000618700 NUTM2GQ5VZR2 741 aa27.07■■□□□ 1.92
UPF3A-211ENST00000618700 FOXD4L1Q9NU39 408 aa27.07■■□□□ 1.92
UPF3A-211ENST00000618700 ZRANB1Q9UGI0 708 aa27.07■■□□□ 1.92
UPF3A-211ENST00000618700 SPATA31A6Q5VVP1 1343 aa27.07■■□□□ 1.92
UPF3A-211ENST00000618700 DDX10Q13206 875 aaKnown RBP27.06■■□□□ 1.92
UPF3A-211ENST00000618700 NLRP13Q86W25 1043 aa27.06■■□□□ 1.92
UPF3A-211ENST00000618700 KNSTRNQ9Y448 316 aa27.06■■□□□ 1.92
UPF3A-211ENST00000618700 ANKRD26Q9UPS8 1709 aa27.05■■□□□ 1.92
UPF3A-211ENST00000618700 ZBTB22O15209 634 aa27.05■■□□□ 1.92
UPF3A-211ENST00000618700 AMER1Q5JTC6 1135 aaPredicted RBP27.05■■□□□ 1.92
UPF3A-211ENST00000618700 NSD2O96028 1365 aa27.05■■□□□ 1.92
UPF3A-211ENST00000618700 LRP6O75581 1613 aa27.03■■□□□ 1.92
UPF3A-211ENST00000618700 NPC1L1Q9UHC9 1359 aa27.03■■□□□ 1.92
UPF3A-211ENST00000618700 CABLES1Q8TDN4 633 aa27.02■■□□□ 1.92
UPF3A-211ENST00000618700 GGNBP2Q9H3C7 697 aa27.02■■□□□ 1.92
UPF3A-211ENST00000618700 NFAT5O94916 1531 aa27.01■■□□□ 1.91
UPF3A-211ENST00000618700 COG3Q96JB2 828 aa27■■□□□ 1.91
UPF3A-211ENST00000618700 CACNB1Q02641 598 aaPredicted RBP26.99■■□□□ 1.91
UPF3A-211ENST00000618700 PLEKHG5O94827 1062 aa26.97■■□□□ 1.91
UPF3A-211ENST00000618700 GCP02774 474 aa26.97■■□□□ 1.91
UPF3A-211ENST00000618700 NUTM2BA6NNL0 878 aaPredicted RBP26.95■■□□□ 1.9
UPF3A-211ENST00000618700 NUTM2EB1AL46 878 aaPredicted RBP26.95■■□□□ 1.9
UPF3A-211ENST00000618700 NUTM2AQ8IVF1 878 aaPredicted RBP26.95■■□□□ 1.9
UPF3A-211ENST00000618700 KCNH5Q8NCM2 988 aa26.95■■□□□ 1.9
UPF3A-211ENST00000618700 CPDO75976 1380 aa26.94■■□□□ 1.9
UPF3A-211ENST00000618700 HAP1P54257 671 aaPredicted RBP26.93■■□□□ 1.9
UPF3A-211ENST00000618700 ILDR2Q71H61 639 aa26.93■■□□□ 1.9
UPF3A-211ENST00000618700 KIAA0232Q92628 1395 aa26.9■■□□□ 1.9
UPF3A-211ENST00000618700 AATKQ6ZMQ8 1374 aa26.89■■□□□ 1.9
UPF3A-211ENST00000618700 CC2D1BQ5T0F9 858 aaKnown RBP26.89■■□□□ 1.9
UPF3A-211ENST00000618700 SOX12O15370 315 aa26.88■■□□□ 1.89
UPF3A-211ENST00000618700 ADAMTS2O95450 1211 aa26.88■■□□□ 1.89
UPF3A-211ENST00000618700 MORC1Q86VD1 984 aa26.88■■□□□ 1.89
UPF3A-211ENST00000618700 COL14A1Q05707 1796 aaKnown RBP26.87■■□□□ 1.89
UPF3A-211ENST00000618700 ZC3H6P61129 1189 aaKnown RBP26.87■■□□□ 1.89
UPF3A-211ENST00000618700 ARHGEF25Q86VW2 580 aa26.87■■□□□ 1.89
UPF3A-211ENST00000618700 RGS17Q9UGC6 210 aaPredicted RBP26.87■■□□□ 1.89
UPF3A-211ENST00000618700 LTN1O94822 1766 aa26.86■■□□□ 1.89
UPF3A-211ENST00000618700 ABCC6O95255 1503 aa26.86■■□□□ 1.89
UPF3A-211ENST00000618700 LMO7Q8WWI1 1683 aa26.86■■□□□ 1.89
UPF3A-211ENST00000618700 COL18A1P39060 1754 aa26.85■■□□□ 1.89
UPF3A-211ENST00000618700 MYCNP04198 464 aaPredicted RBP26.84■■□□□ 1.89
UPF3A-211ENST00000618700 FBLN1P23142 703 aa26.84■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms