RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 LRRC7Q96NW7 1537 aa15.13■□□□□ 0.01
MMP28-206ENST00000616383 NINLQ9Y2I6 1382 aa15.12■□□□□ 0.01
MMP28-206ENST00000616383 MON2Q7Z3U7 1717 aa15.12■□□□□ 0.01
MMP28-206ENST00000616383 C14orf37Q86TY3 774 aa15.12■□□□□ 0.01
MMP28-206ENST00000616383 NCOA3Q9Y6Q9 1424 aa15.11■□□□□ 0.01
MMP28-206ENST00000616383 PRR36Q9H6K5 1346 aa15.11■□□□□ 0.01
MMP28-206ENST00000616383 PPIP5K1Q6PFW1 1433 aa15.1■□□□□ 0.01
MMP28-206ENST00000616383 ANKARQ7Z5J8 1434 aa15.1■□□□□ 0.01
MMP28-206ENST00000616383 TMC1Q8TDI8 760 aa15.1■□□□□ 0.01
MMP28-206ENST00000616383 LTBP4Q8N2S1 1624 aa15.1■□□□□ 0.01
MMP28-206ENST00000616383 KIF20BQ96Q89 1820 aa15.09■□□□□ 0.01
MMP28-206ENST00000616383 NUDT16Q96DE0 195 aaKnown RBP15.09■□□□□ 0.01
MMP28-206ENST00000616383 PANK3Q9H999 370 aa15.09■□□□□ 0.01
MMP28-206ENST00000616383 DCCP43146 1447 aa15.09■□□□□ 0.01
MMP28-206ENST00000616383 CD163L1Q9NR16 1453 aa15.08■□□□□ 0.01
MMP28-206ENST00000616383 SLC12A5Q9H2X9 1139 aa15.08■□□□□ 0
MMP28-206ENST00000616383 NRKQ7Z2Y5 1582 aa15.07■□□□□ 0
MMP28-206ENST00000616383 NUTM2FA1L443 756 aa15.07■□□□□ 0
MMP28-206ENST00000616383 ANKRD36BQ8N2N9 1353 aa15.07■□□□□ 0
MMP28-206ENST00000616383 KIF1AQ12756 1690 aa15.06■□□□□ 0
MMP28-206ENST00000616383 ANKRD26Q9UPS8 1709 aa15.06■□□□□ 0
MMP28-206ENST00000616383 A0A1W2PP64 1363 aa15.06■□□□□ 0
MMP28-206ENST00000616383 C19orf44Q9H6X5 657 aa15.05■□□□□ -0
MMP28-206ENST00000616383 CABP1Q9NZU7 370 aa15.05■□□□□ -0
MMP28-206ENST00000616383 CCDC61Q9Y6R9 512 aa15.05■□□□□ -0
MMP28-206ENST00000616383 MSH6P52701 1360 aa15.05■□□□□ -0
MMP28-206ENST00000616383 NSD3Q9BZ95 1437 aa15.05■□□□□ -0
MMP28-206ENST00000616383 MST1RQ04912 1400 aa15.03■□□□□ -0
MMP28-206ENST00000616383 CPSF1Q10570 1443 aaKnown RBP15.03■□□□□ -0
MMP28-206ENST00000616383 TERF2IPQ9NYB0 399 aa15.03■□□□□ -0
MMP28-206ENST00000616383 PER1O15534 1290 aaPredicted RBP15.02■□□□□ -0
MMP28-206ENST00000616383 C1orf167Q5SNV9 1468 aa15.01□□□□□ -0.01
MMP28-206ENST00000616383 ATF3P18847 181 aa15.01□□□□□ -0.01
MMP28-206ENST00000616383 HDGFL2Q7Z4V5 671 aaPredicted RBP15.01□□□□□ -0.01
MMP28-206ENST00000616383 CARD14Q9BXL6 1004 aa15.01□□□□□ -0.01
MMP28-206ENST00000616383 KNSTRNQ9Y448 316 aa15.01□□□□□ -0.01
MMP28-206ENST00000616383 KTN1Q86UP2 1357 aaKnown RBP15□□□□□ -0.01
MMP28-206ENST00000616383 PLEKHG3A1L390 1219 aa15□□□□□ -0.01
MMP28-206ENST00000616383 ANP32CO43423 234 aa15□□□□□ -0.01
MMP28-206ENST00000616383 POLR3AO14802 1390 aaPredicted RBP14.99□□□□□ -0.01
MMP28-206ENST00000616383 ACEP12821 1306 aa14.99□□□□□ -0.01
MMP28-206ENST00000616383 UBAP1LF5GYI3 381 aa14.99□□□□□ -0.01
MMP28-206ENST00000616383 CADPS2Q86UW7 1296 aa14.99□□□□□ -0.01
MMP28-206ENST00000616383 MIER1Q8N108 512 aa14.99□□□□□ -0.01
MMP28-206ENST00000616383 EDC4Q6P2E9 1401 aaKnown RBP14.99□□□□□ -0.01
MMP28-206ENST00000616383 CNGB1Q14028 1251 aaPredicted RBP14.98□□□□□ -0.01
MMP28-206ENST00000616383 PMFBP1Q8TBY8 1022 aa14.98□□□□□ -0.01
MMP28-206ENST00000616383 DCBLD2Q96PD2 775 aa14.98□□□□□ -0.01
MMP28-206ENST00000616383 USP6P35125 1406 aa14.98□□□□□ -0.01
MMP28-206ENST00000616383 NPC1L1Q9UHC9 1359 aa14.98□□□□□ -0.01
MMP28-206ENST00000616383 CLCN6P51797 869 aa14.97□□□□□ -0.01
MMP28-206ENST00000616383 AMER1Q5JTC6 1135 aaPredicted RBP14.97□□□□□ -0.01
MMP28-206ENST00000616383 PHF8Q9UPP1 1060 aa14.97□□□□□ -0.01
MMP28-206ENST00000616383 TRPM3Q9HCF6 1732 aaPredicted RBP14.97□□□□□ -0.01
MMP28-206ENST00000616383 CGNL1Q0VF96 1302 aa14.96□□□□□ -0.01
MMP28-206ENST00000616383 ESCO1Q5FWF5 840 aa14.96□□□□□ -0.01
MMP28-206ENST00000616383 CC2D1BQ5T0F9 858 aaKnown RBP14.96□□□□□ -0.01
MMP28-206ENST00000616383 PRKRIP1Q9H875 184 aaPredicted RBP14.96□□□□□ -0.01
MMP28-206ENST00000616383 ZRANB1Q9UGI0 708 aa14.96□□□□□ -0.01
MMP28-206ENST00000616383 PIK3C2AO00443 1686 aa14.96□□□□□ -0.01
MMP28-206ENST00000616383 PARD3Q8TEW0 1356 aa14.96□□□□□ -0.02
MMP28-206ENST00000616383 NGDNQ8NEJ9 315 aaKnown RBP14.95□□□□□ -0.02
MMP28-206ENST00000616383 USP54Q70EL1 1684 aa14.95□□□□□ -0.02
MMP28-206ENST00000616383 NSD2O96028 1365 aa14.95□□□□□ -0.02
MMP28-206ENST00000616383 MARF1Q9Y4F3 1742 aaKnown RBP14.95□□□□□ -0.02
MMP28-206ENST00000616383 ORAI2Q96SN7 254 aa14.94□□□□□ -0.02
MMP28-206ENST00000616383 NHSL1Q5SYE7 1610 aa14.94□□□□□ -0.02
MMP28-206ENST00000616383 SSH2Q76I76 1423 aa14.93□□□□□ -0.02
MMP28-206ENST00000616383 IQSEC2Q5JU85 1478 aa14.93□□□□□ -0.02
MMP28-206ENST00000616383 ROBO1Q9Y6N7 1651 aa14.93□□□□□ -0.02
MMP28-206ENST00000616383 POTEIP0CG38 1075 aa14.92□□□□□ -0.02
MMP28-206ENST00000616383 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.92□□□□□ -0.02
MMP28-206ENST00000616383 ALS2Q96Q42 1657 aa14.91□□□□□ -0.02
MMP28-206ENST00000616383 SPDYE4A6NLX3 237 aa14.91□□□□□ -0.02
MMP28-206ENST00000616383 RALBP1Q15311 655 aa14.91□□□□□ -0.02
MMP28-206ENST00000616383 TTC21BQ7Z4L5 1316 aa14.91□□□□□ -0.02
MMP28-206ENST00000616383 BRD4O60885 1362 aaPredicted RBP14.9□□□□□ -0.02
MMP28-206ENST00000616383 FYB1O15117 783 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 NME9Q86XW9 330 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 GGNBP2Q9H3C7 697 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 CREBZFQ9NS37 354 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 SLAIN2Q9P270 581 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 TTC21AQ8NDW8 1320 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 MYBBP1AQ9BQG0 1328 aaKnown RBP14.89□□□□□ -0.03
MMP28-206ENST00000616383 PXDNQ92626 1479 aa14.89□□□□□ -0.03
MMP28-206ENST00000616383 MAP2P11137 1827 aaKnown RBP14.88□□□□□ -0.03
MMP28-206ENST00000616383 FOXO3O43524 673 aa14.88□□□□□ -0.03
MMP28-206ENST00000616383 BRINP3Q76B58 766 aa14.88□□□□□ -0.03
MMP28-206ENST00000616383 OVOS2A0A0J9YW53 1432 aa14.88□□□□□ -0.03
MMP28-206ENST00000616383 OVOS2Q6IE36 1432 aa14.88□□□□□ -0.03
MMP28-206ENST00000616383 PSME1Q06323 249 aa14.87□□□□□ -0.03
MMP28-206ENST00000616383 MORC1Q86VD1 984 aa14.87□□□□□ -0.03
MMP28-206ENST00000616383 CCER2I3L3R5 266 aa14.86□□□□□ -0.03
MMP28-206ENST00000616383 XPCQ01831 940 aaPredicted RBP14.86□□□□□ -0.03
MMP28-206ENST00000616383 ZNF579Q8NAF0 562 aaKnown RBP14.86□□□□□ -0.03
MMP28-206ENST00000616383 NPHP3Q7Z494 1330 aa14.86□□□□□ -0.03
MMP28-206ENST00000616383 CRYBG1Q9Y4K1 1723 aa14.86□□□□□ -0.03
MMP28-206ENST00000616383 AHDC1Q5TGY3 1603 aaPredicted RBP14.85□□□□□ -0.03
MMP28-206ENST00000616383 PAK3O75914 559 aaPredicted RBP14.84□□□□□ -0.03
MMP28-206ENST00000616383 PPP2R1AP30153 589 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms