RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 TTC5Q8N0Z6 440 aa11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 RARSP54136 660 aaKnown RBP11.03□□□□□ -0.64
PDLIM5-222ENST00000615540 ZCCHC11Q5TAX3 1644 aaKnown RBP11.02□□□□□ -0.64
PDLIM5-222ENST00000615540 ST18O60284 1047 aa11.02□□□□□ -0.64
PDLIM5-222ENST00000615540 MAP4K4O95819 1239 aaPredicted RBP11.02□□□□□ -0.64
PDLIM5-222ENST00000615540 GSE1Q14687 1217 aa11.02□□□□□ -0.64
PDLIM5-222ENST00000615540 UHRF1BP1Q6BDS2 1440 aa11.02□□□□□ -0.64
PDLIM5-222ENST00000615540 COL17A1Q9UMD9 1497 aaPredicted RBP11.02□□□□□ -0.64
PDLIM5-222ENST00000615540 GOLGA6L4A6NEF3 574 aa11.02□□□□□ -0.65
PDLIM5-222ENST00000615540 NLRP2Q9NX02 1062 aa11.02□□□□□ -0.65
PDLIM5-222ENST00000615540 NFKBIBQ15653 356 aa11.02□□□□□ -0.65
PDLIM5-222ENST00000615540 ATF7IPQ6VMQ6 1270 aa11.02□□□□□ -0.65
PDLIM5-222ENST00000615540 ARHGEF5Q12774 1597 aa11.02□□□□□ -0.65
PDLIM5-222ENST00000615540 CARD14Q9BXL6 1004 aa11.02□□□□□ -0.65
PDLIM5-222ENST00000615540 ZRANB1Q9UGI0 708 aa11.01□□□□□ -0.65
PDLIM5-222ENST00000615540 KDM5CP41229 1560 aa11.01□□□□□ -0.65
PDLIM5-222ENST00000615540 ATF3P18847 181 aa11.01□□□□□ -0.65
PDLIM5-222ENST00000615540 FAM83GA6ND36 823 aa11.01□□□□□ -0.65
PDLIM5-222ENST00000615540 PREX2Q70Z35 1606 aa11.01□□□□□ -0.65
PDLIM5-222ENST00000615540 NFE2L2Q16236 605 aa11□□□□□ -0.65
PDLIM5-222ENST00000615540 WASLO00401 505 aaPredicted RBP11□□□□□ -0.65
PDLIM5-222ENST00000615540 IGHDP01880 384 aa11□□□□□ -0.65
PDLIM5-222ENST00000615540 TNNQ9UQP3 1299 aa11□□□□□ -0.65
PDLIM5-222ENST00000615540 CDC42BPAQ5VT25 1732 aa11□□□□□ -0.65
PDLIM5-222ENST00000615540 SYTL4Q96C24 671 aaPredicted RBP11□□□□□ -0.65
PDLIM5-222ENST00000615540 ZNF692Q9BU19 519 aaPredicted RBP11□□□□□ -0.65
PDLIM5-222ENST00000615540 SSH1Q8WYL5 1049 aa11□□□□□ -0.65
PDLIM5-222ENST00000615540 THEMISQ8N1K5 641 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 FCHSD2O94868 740 aa10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 UGGT1Q9NYU2 1555 aa10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 PLEKHH1Q9ULM0 1364 aa10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 ANO2Q9NQ90 1003 aa10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 TULP1O00294 542 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 PROSER2Q86WR7 435 aaPredicted RBP10.99□□□□□ -0.65
PDLIM5-222ENST00000615540 UBTFL1P0CB47 393 aaPredicted RBP10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 GAS2L2Q8NHY3 880 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 NCKAP5LQ9HCH0 1330 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 MBD5Q9P267 1494 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 CDC45O75419 566 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 IFIT2P09913 472 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 CCDC30Q5VVM6 783 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 USP35Q9P2H5 1018 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 INTS3Q68E01 1043 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 DRC7Q8IY82 874 aa10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 LRPPRCP42704 1394 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-222ENST00000615540 CFAP65Q6ZU64 1925 aaKnown RBP10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 RIC3Q7Z5B4 369 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 DIAPH3Q9NSV4 1193 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 NINLQ9Y2I6 1382 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 SMARCA5O60264 1052 aaPredicted RBP10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 MSNP26038 577 aaKnown RBP10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 FRAT2O75474 233 aaPredicted RBP10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 GNL2Q13823 731 aaKnown RBP10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 DDX11L8A8MPP1 907 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 AMOTL2Q9Y2J4 779 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 CHD1LQ86WJ1 897 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 RAPGEF4Q8WZA2 1011 aa10.97□□□□□ -0.65
PDLIM5-222ENST00000615540 PPIP5K1Q6PFW1 1433 aa10.96□□□□□ -0.65
PDLIM5-222ENST00000615540 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.96□□□□□ -0.65
PDLIM5-222ENST00000615540 PER1O15534 1290 aaPredicted RBP10.96□□□□□ -0.65
PDLIM5-222ENST00000615540 FOSBP53539 338 aa10.96□□□□□ -0.65
PDLIM5-222ENST00000615540 CCDC61Q9Y6R9 512 aa10.96□□□□□ -0.65
PDLIM5-222ENST00000615540 CROCC2H7BZ55 1655 aa10.96□□□□□ -0.66
PDLIM5-222ENST00000615540 SPINK5Q9NQ38 1064 aaPredicted RBP10.96□□□□□ -0.66
PDLIM5-222ENST00000615540 NEXNQ0ZGT2 675 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 MCTP1Q6DN14 999 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 RIMS2Q9UQ26 1411 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 MYL6BP14649 208 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 PTMSP20962 102 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 SPATA31E1Q6ZUB1 1445 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 TRIM27P14373 513 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 ANKRD36BQ8N2N9 1353 aa10.95□□□□□ -0.66
PDLIM5-222ENST00000615540 FYB1O15117 783 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 STRN4Q9NRL3 753 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 DDX49Q9Y6V7 483 aaKnown RBP10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 ABCC1P33527 1531 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 A0A1W2PP64 1363 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 AAMPQ13685 434 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 ARID3AQ99856 593 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 ADCY10Q96PN6 1610 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 CHMP4AQ9BY43 222 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 POGZQ7Z3K3 1410 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 REC8O95072 547 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 G3BP1Q13283 466 aaKnown RBP eCLIP10.94□□□□□ -0.668e-6■□□□□ 9
PDLIM5-222ENST00000615540 ANKLE2Q86XL3 938 aa10.94□□□□□ -0.66
PDLIM5-222ENST00000615540 F6X3S4 739 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 MBIPQ9NS73 344 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 KDM5AP29375 1690 aaKnown RBP10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 HDGFL1Q5TGJ6 251 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 ZNF530Q6P9A1 599 aaPredicted RBP10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 GCC1Q96CN9 775 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 ACEP12821 1306 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 SURF6O75683 361 aaKnown RBP10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 GNAI2P04899 355 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 PLEKHO1Q53GL0 409 aaPredicted RBP10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 SIL1Q9H173 461 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 IFT57Q9NWB7 429 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 CHMP5Q9NZZ3 219 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 BTBD11A6QL63 1104 aa10.93□□□□□ -0.66
PDLIM5-222ENST00000615540 ZC3H6P61129 1189 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms