RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, human

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM3A-221	ENST00000612856	L1TD1	Q5T7N2	865 aa	Known RBP	13.6	□□□□□ -0.23
FAM3A-221	ENST00000612856	ZMYM3	Q14202	1370 aa		13.6	□□□□□ -0.23
FAM3A-221	ENST00000612856	KCNJ4	P48050	445 aa		13.6	□□□□□ -0.23
FAM3A-221	ENST00000612856	BECN1	Q14457	450 aa		13.6	□□□□□ -0.23
FAM3A-221	ENST00000612856	ATP10A	O60312	1499 aa		13.59	□□□□□ -0.23
FAM3A-221	ENST00000612856	MAST1	Q9Y2H9	1570 aa		13.59	□□□□□ -0.23
FAM3A-221	ENST00000612856	FKBP5	Q13451	457 aa	Predicted RBP	13.58	□□□□□ -0.24
FAM3A-221	ENST00000612856	YEATS2	Q9ULM3	1422 aa		13.57	□□□□□ -0.24
FAM3A-221	ENST00000612856	CRBN	Q96SW2	442 aa		13.57	□□□□□ -0.24
FAM3A-221	ENST00000612856	ZNF518A	Q6AHZ1	1483 aa		13.57	□□□□□ -0.24
FAM3A-221	ENST00000612856	KDM5D	Q9BY66	1539 aa		13.57	□□□□□ -0.24
FAM3A-221	ENST00000612856	GOLGA6L3	A6NEY3	463 aa		13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	WASL	O00401	505 aa	Predicted RBP	13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	CARD14	Q9BXL6	1004 aa		13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	IPO8	O15397	1037 aa	Known RBP	13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	GORAB	Q5T7V8	394 aa		13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	KRT28	Q7Z3Y7	464 aa		13.56	□□□□□ -0.24
FAM3A-221	ENST00000612856	CALD1	Q05682	793 aa	Known RBP	13.55	□□□□□ -0.24
FAM3A-221	ENST00000612856	ANP32B	Q92688	251 aa	Known RBP	13.55	□□□□□ -0.24
FAM3A-221	ENST00000612856	WWC3	Q9ULE0	1092 aa		13.55	□□□□□ -0.24
FAM3A-221	ENST00000612856	STAC3	Q96MF2	364 aa		13.55	□□□□□ -0.24
FAM3A-221	ENST00000612856	ORAI2	Q96SN7	254 aa		13.55	□□□□□ -0.24
FAM3A-221	ENST00000612856	ZFYVE16	Q7Z3T8	1539 aa		13.54	□□□□□ -0.24
FAM3A-221	ENST00000612856	SCAF11	Q99590	1463 aa	Known RBP	13.54	□□□□□ -0.24
FAM3A-221	ENST00000612856	FGD1	P98174	961 aa		13.54	□□□□□ -0.24
FAM3A-221	ENST00000612856	LTK	P29376	864 aa		13.54	□□□□□ -0.24
FAM3A-221	ENST00000612856	ACE	P12821	1306 aa		13.53	□□□□□ -0.24
FAM3A-221	ENST00000612856	MS4A1	P11836	297 aa		13.53	□□□□□ -0.24
FAM3A-221	ENST00000612856	MCM10	Q7L590	875 aa		13.53	□□□□□ -0.24
FAM3A-221	ENST00000612856	RPGRIP1L	Q68CZ1	1315 aa		13.53	□□□□□ -0.24
FAM3A-221	ENST00000612856	LMOD3	Q0VAK6	560 aa		13.53	□□□□□ -0.24
FAM3A-221	ENST00000612856	C14orf93	Q9H972	538 aa	Known RBP	13.53	□□□□□ -0.24
FAM3A-221	ENST00000612856	C20orf194	Q5TEA3	1177 aa		13.52	□□□□□ -0.24
FAM3A-221	ENST00000612856	C8orf37	Q96NL8	207 aa		13.52	□□□□□ -0.24
FAM3A-221	ENST00000612856	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.52	□□□□□ -0.24
FAM3A-221	ENST00000612856	MYL6B	P14649	208 aa		13.52	□□□□□ -0.25
FAM3A-221	ENST00000612856	RUNDC1	Q96C34	613 aa		13.52	□□□□□ -0.25
FAM3A-221	ENST00000612856	PANK1	Q8TE04	598 aa		13.52	□□□□□ -0.25
FAM3A-221	ENST00000612856	PARD3	Q8TEW0	1356 aa		13.52	□□□□□ -0.25
FAM3A-221	ENST00000612856	ZNF692	Q9BU19	519 aa	Predicted RBP	13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	NPAT	Q14207	1427 aa		13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	NSD3	Q9BZ95	1437 aa		13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	PDE3B	Q13370	1112 aa		13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	HSP90AB2P	Q58FF8	381 aa		13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	MPRIP	Q6WCQ1	1025 aa		13.51	□□□□□ -0.25
FAM3A-221	ENST00000612856	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.5	□□□□□ -0.25
FAM3A-221	ENST00000612856	SMG6	Q86US8	1419 aa	Known RBP	13.5	□□□□□ -0.25
FAM3A-221	ENST00000612856	TRIM6-TRIM34	B2RNG4	842 aa		13.5	□□□□□ -0.25
FAM3A-221	ENST00000612856	TAT	P17735	454 aa	Predicted RBP	13.5	□□□□□ -0.25
FAM3A-221	ENST00000612856		G3V3G9	751 aa		13.49	□□□□□ -0.25
FAM3A-221	ENST00000612856	EXOSC9	Q06265	439 aa	Known RBP	13.49	□□□□□ -0.25
FAM3A-221	ENST00000612856	FAM161A	Q3B820	660 aa		13.49	□□□□□ -0.25
FAM3A-221	ENST00000612856	DCAF8	Q5TAQ9	597 aa		13.49	□□□□□ -0.25
FAM3A-221	ENST00000612856	BICDL1	Q6ZP65	573 aa		13.49	□□□□□ -0.25
FAM3A-221	ENST00000612856	NOL8	Q76FK4	1167 aa	Known RBP	13.49	□□□□□ -0.25
FAM3A-221	ENST00000612856	BCAR3	O75815	825 aa		13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	TSPOAP1	O95153	1857 aa		13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	MAGI2	Q86UL8	1455 aa		13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	RBM10	P98175	930 aa	Known RBP	13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	CADPS2	Q86UW7	1296 aa		13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	PRDM15	P57071	1507 aa	Predicted RBP	13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	PLXNC1	O60486	1568 aa		13.48	□□□□□ -0.25
FAM3A-221	ENST00000612856	C1orf115	Q9H7X2	142 aa		13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	FAM13B	Q9NYF5	915 aa		13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	IQGAP3	Q86VI3	1631 aa		13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	UNC13B	O14795	1591 aa		13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	LRRC59	Q96AG4	307 aa	Known RBP	13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	FAM83G	A6ND36	823 aa		13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	NCL	P19338	710 aa	Known RBP	13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	RIC3	Q7Z5B4	369 aa		13.47	□□□□□ -0.25
FAM3A-221	ENST00000612856	CLTCL1	P53675	1640 aa		13.46	□□□□□ -0.25
FAM3A-221	ENST00000612856	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.46	□□□□□ -0.25
FAM3A-221	ENST00000612856	CABP4	P57796	275 aa		13.46	□□□□□ -0.26
FAM3A-221	ENST00000612856		E9PCH4	1651 aa		13.46	□□□□□ -0.26
FAM3A-221	ENST00000612856		E9PSI1	815 aa		13.45	□□□□□ -0.26
FAM3A-221	ENST00000612856	FBXW7	Q969H0	707 aa		13.45	□□□□□ -0.26
FAM3A-221	ENST00000612856	ANXA1	P04083	346 aa		13.45	□□□□□ -0.26
FAM3A-221	ENST00000612856	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.45	□□□□□ -0.26
FAM3A-221	ENST00000612856	ACSBG1	Q96GR2	724 aa		13.45	□□□□□ -0.26
FAM3A-221	ENST00000612856	ANKRD45	Q5TZF3	282 aa		13.45	□□□□□ -0.26
FAM3A-221	ENST00000612856	PIP4K2A	P48426	406 aa	Predicted RBP	13.44	□□□□□ -0.26
FAM3A-221	ENST00000612856	DMRT2	Q9Y5R5	561 aa		13.44	□□□□□ -0.26
FAM3A-221	ENST00000612856	TRPM1	Q7Z4N2	1603 aa		13.44	□□□□□ -0.26
FAM3A-221	ENST00000612856	RRP9	O43818	475 aa	Known RBP	13.44	□□□□□ -0.26
FAM3A-221	ENST00000612856	TOM1	O60784	492 aa		13.44	□□□□□ -0.26
FAM3A-221	ENST00000612856	NEXN	Q0ZGT2	675 aa		13.44	□□□□□ -0.26
FAM3A-221	ENST00000612856	RIMS2	Q9UQ26	1411 aa		13.43	□□□□□ -0.26
FAM3A-221	ENST00000612856	AEBP1	Q8IUX7	1158 aa		13.43	□□□□□ -0.26
FAM3A-221	ENST00000612856	PANK2	Q9BZ23	570 aa		13.43	□□□□□ -0.26
FAM3A-221	ENST00000612856	PLEKHH1	Q9ULM0	1364 aa		13.43	□□□□□ -0.26
FAM3A-221	ENST00000612856	PTPRT	O14522	1441 aa		13.43	□□□□□ -0.26
FAM3A-221	ENST00000612856	ZKSCAN2	Q63HK3	967 aa		13.43	□□□□□ -0.26
FAM3A-221	ENST00000612856	HDGFL1	Q5TGJ6	251 aa		13.42	□□□□□ -0.26
FAM3A-221	ENST00000612856	TMX4	Q9H1E5	349 aa	Predicted RBP	13.42	□□□□□ -0.26
FAM3A-221	ENST00000612856	SLC4A2	P04920	1241 aa		13.42	□□□□□ -0.26
FAM3A-221	ENST00000612856	RILPL2	Q969X0	211 aa		13.42	□□□□□ -0.26
FAM3A-221	ENST00000612856	TOMM22	Q9NS69	142 aa		13.42	□□□□□ -0.26

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