RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 GPCPD1Q9NPB8 672 aa9.68□□□□□ -0.86
SMCHD1-213ENST00000609587 WDR4P57081 412 aaKnown RBP9.67□□□□□ -0.86
SMCHD1-213ENST00000609587 SCARF1Q14162 830 aa9.67□□□□□ -0.86
SMCHD1-213ENST00000609587 MPNDQ8N594 471 aa9.67□□□□□ -0.86
SMCHD1-213ENST00000609587 VARSP26640 1264 aaKnown RBP9.66□□□□□ -0.86
SMCHD1-213ENST00000609587 NUTM1Q86Y26 1132 aa9.66□□□□□ -0.86
SMCHD1-213ENST00000609587 EVA1BQ9NVM1 165 aa9.66□□□□□ -0.86
SMCHD1-213ENST00000609587 MINK1Q8N4C8 1332 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-213ENST00000609587 CLCN1P35523 988 aa9.65□□□□□ -0.86
SMCHD1-213ENST00000609587 KCNMA1Q12791 1236 aa9.65□□□□□ -0.86
SMCHD1-213ENST00000609587 ZC3H15Q8WU90 426 aaKnown RBP9.65□□□□□ -0.86
SMCHD1-213ENST00000609587 PLEKHG3A1L390 1219 aa9.64□□□□□ -0.87
SMCHD1-213ENST00000609587 KCNH2Q12809 1159 aa9.64□□□□□ -0.87
SMCHD1-213ENST00000609587 KCTD17Q8N5Z5 321 aa9.64□□□□□ -0.87
SMCHD1-213ENST00000609587 ZMYND10O75800 440 aa9.62□□□□□ -0.87
SMCHD1-213ENST00000609587 ZFAND3Q9H8U3 227 aa9.61□□□□□ -0.87
SMCHD1-213ENST00000609587 BARGINQ6ZT62 677 aa9.6□□□□□ -0.87
SMCHD1-213ENST00000609587 PRR7Q8TB68 274 aa9.6□□□□□ -0.87
SMCHD1-213ENST00000609587 MAN1A2O60476 641 aa9.59□□□□□ -0.87
SMCHD1-213ENST00000609587 PPFIA3O75145 1194 aa9.59□□□□□ -0.87
SMCHD1-213ENST00000609587 NDUFV2P19404 249 aa9.59□□□□□ -0.87
SMCHD1-213ENST00000609587 C6orf118Q5T5N4 469 aa9.59□□□□□ -0.87
SMCHD1-213ENST00000609587 ITPKCQ96DU7 683 aa9.59□□□□□ -0.87
SMCHD1-213ENST00000609587 ZIC2O95409 532 aaPredicted RBP9.58□□□□□ -0.88
SMCHD1-213ENST00000609587 NR3C2P08235 984 aa9.58□□□□□ -0.88
SMCHD1-213ENST00000609587 KRT76Q01546 638 aa9.58□□□□□ -0.88
SMCHD1-213ENST00000609587 SPIRE2Q8WWL2 714 aa9.58□□□□□ -0.88
SMCHD1-213ENST00000609587 MOXD2PA6NHM9 499 aa9.57□□□□□ -0.88
SMCHD1-213ENST00000609587 DESI1Q6ICB0 168 aa9.57□□□□□ -0.88
SMCHD1-213ENST00000609587 FAM174AQ8TBP5 190 aa9.57□□□□□ -0.88
SMCHD1-213ENST00000609587 CDK15Q96Q40 435 aa9.57□□□□□ -0.88
SMCHD1-213ENST00000609587 FOXJ1Q92949 421 aa9.56□□□□□ -0.88
SMCHD1-213ENST00000609587 MTMR2Q13614 643 aa9.54□□□□□ -0.88
SMCHD1-213ENST00000609587 LINC00528Q8N1L1 170 aa9.54□□□□□ -0.88
SMCHD1-213ENST00000609587 MEIOBQ8N635 442 aa9.54□□□□□ -0.88
SMCHD1-213ENST00000609587 DNMT3LQ9UJW3 386 aa9.54□□□□□ -0.88
SMCHD1-213ENST00000609587 RASSF7Q02833 373 aa9.53□□□□□ -0.88
SMCHD1-213ENST00000609587 TMEM151AQ8N4L1 468 aa9.53□□□□□ -0.88
SMCHD1-213ENST00000609587 KRI1Q8N9T8 703 aaKnown RBP9.53□□□□□ -0.88
SMCHD1-213ENST00000609587 MAP10Q9P2G4 905 aa9.53□□□□□ -0.88
SMCHD1-213ENST00000609587 GDF11O95390 407 aa9.52□□□□□ -0.89
SMCHD1-213ENST00000609587 ARID5BQ14865 1188 aa9.52□□□□□ -0.89
SMCHD1-213ENST00000609587 C4orf48Q5BLP8 95 aa9.52□□□□□ -0.89
SMCHD1-213ENST00000609587 SOS2Q07890 1332 aaPredicted RBP9.52□□□□□ -0.89
SMCHD1-213ENST00000609587 SPDYE5A6NIY4 337 aa9.51□□□□□ -0.89
SMCHD1-213ENST00000609587 F12P00748 615 aaPredicted RBP9.51□□□□□ -0.89
SMCHD1-213ENST00000609587 BMP2P12643 396 aa9.51□□□□□ -0.89
SMCHD1-213ENST00000609587 CTHP32929 405 aa9.51□□□□□ -0.89
SMCHD1-213ENST00000609587 GPR161Q8N6U8 529 aaKnown RBP9.51□□□□□ -0.89
SMCHD1-213ENST00000609587 SSTR3P32745 418 aaPredicted RBP9.5□□□□□ -0.89
SMCHD1-213ENST00000609587 GRM5P41594 1212 aa9.5□□□□□ -0.89
SMCHD1-213ENST00000609587 NR5A1Q13285 461 aa9.5□□□□□ -0.89
SMCHD1-213ENST00000609587 LYPD8Q6UX82 237 aa9.5□□□□□ -0.89
SMCHD1-213ENST00000609587 CFAP99D6REC4 459 aa9.49□□□□□ -0.89
SMCHD1-213ENST00000609587 ADAMTS8Q9UP79 889 aa9.49□□□□□ -0.89
SMCHD1-213ENST00000609587 RNF225M0QZC1 329 aaPredicted RBP9.48□□□□□ -0.89
SMCHD1-213ENST00000609587 CNTNAP3BQ96NU0 1288 aa9.48□□□□□ -0.89
SMCHD1-213ENST00000609587 CNTNAP3Q9BZ76 1288 aa9.48□□□□□ -0.89
SMCHD1-213ENST00000609587 AK7Q96M32 723 aa9.47□□□□□ -0.89
SMCHD1-213ENST00000609587 UPP2O95045 317 aa9.46□□□□□ -0.9
SMCHD1-213ENST00000609587 FSHRP23945 695 aa9.45□□□□□ -0.9
SMCHD1-213ENST00000609587 ZNF385CQ66K41 422 aaPredicted RBP9.45□□□□□ -0.9
SMCHD1-213ENST00000609587 AMHR2Q16671 573 aa9.44□□□□□ -0.9
SMCHD1-213ENST00000609587 RNFT1Q5M7Z0 435 aa9.44□□□□□ -0.9
SMCHD1-213ENST00000609587 RSBN1LQ6PCB5 846 aaPredicted RBP9.44□□□□□ -0.9
SMCHD1-213ENST00000609587 C1QTNF2Q9BXJ5 285 aa9.44□□□□□ -0.9
SMCHD1-213ENST00000609587 COL25A1Q9BXS0 654 aaPredicted RBP9.44□□□□□ -0.9
SMCHD1-213ENST00000609587 SPTLC1O15269 473 aa9.43□□□□□ -0.9
SMCHD1-213ENST00000609587 GJA5P36382 358 aa9.43□□□□□ -0.9
SMCHD1-213ENST00000609587 PTSQ03393 145 aa9.43□□□□□ -0.9
SMCHD1-213ENST00000609587 TTLL12Q14166 644 aaPredicted RBP9.43□□□□□ -0.9
SMCHD1-213ENST00000609587 SLC24A3Q9HC58 644 aa9.43□□□□□ -0.9
SMCHD1-213ENST00000609587 PCDHB15Q9Y5E8 787 aa9.43□□□□□ -0.9
SMCHD1-213ENST00000609587 TRIM66O15016 1216 aa9.42□□□□□ -0.9
SMCHD1-213ENST00000609587 AGERQ15109 404 aa9.42□□□□□ -0.9
SMCHD1-213ENST00000609587 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.42□□□□□ -0.9
SMCHD1-213ENST00000609587 GIGYF2Q6Y7W6 1299 aaKnown RBP9.42□□□□□ -0.9
SMCHD1-213ENST00000609587 BPHLQ86WA6 291 aaPredicted RBP9.42□□□□□ -0.9
SMCHD1-213ENST00000609587 TTLL8A6PVC2 850 aa9.41□□□□□ -0.9
SMCHD1-213ENST00000609587 PER1O15534 1290 aaPredicted RBP9.41□□□□□ -0.9
SMCHD1-213ENST00000609587 SVOPQ8N4V2 548 aa9.41□□□□□ -0.9
SMCHD1-213ENST00000609587 WHAMMQ8TF30 809 aa9.41□□□□□ -0.9
SMCHD1-213ENST00000609587 TSEN34Q9BSV6 310 aaKnown RBP9.41□□□□□ -0.9
SMCHD1-213ENST00000609587 TBC1D2Q9BYX2 928 aa9.41□□□□□ -0.9
SMCHD1-213ENST00000609587 HRCP23327 699 aa9.4□□□□□ -0.9
SMCHD1-213ENST00000609587 NANOS1Q8WY41 292 aaKnown RBP9.4□□□□□ -0.9
SMCHD1-213ENST00000609587 BEGAINQ9BUH8 593 aa9.4□□□□□ -0.9
SMCHD1-213ENST00000609587 MAP4K5Q9Y4K4 846 aa9.4□□□□□ -0.9
SMCHD1-213ENST00000609587 DNMT3AQ9Y6K1 912 aaPredicted RBP9.4□□□□□ -0.9
SMCHD1-213ENST00000609587 GPAT2Q6NUI2 795 aa9.39□□□□□ -0.91
SMCHD1-213ENST00000609587 SH3RF1Q7Z6J0 888 aa9.39□□□□□ -0.91
SMCHD1-213ENST00000609587 CABLES1Q8TDN4 633 aa9.38□□□□□ -0.91
SMCHD1-213ENST00000609587 ZBTB3Q9H5J0 574 aa9.38□□□□□ -0.91
SMCHD1-213ENST00000609587 ARHGEF15O94989 841 aa9.37□□□□□ -0.91
SMCHD1-213ENST00000609587 SLURP2P0DP57 97 aa9.37□□□□□ -0.91
SMCHD1-213ENST00000609587 IRS1P35568 1242 aa9.37□□□□□ -0.91
SMCHD1-213ENST00000609587 TRMT44Q8IYL2 757 aaKnown RBP9.37□□□□□ -0.91
SMCHD1-213ENST00000609587 CCDC155Q8N6L0 562 aa9.37□□□□□ -0.91
SMCHD1-213ENST00000609587 VASH1Q7L8A9 365 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-213ENST00000609587 SH3BP5LQ7L8J4 393 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms