RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 MSH6P52701 1360 aa15.67■□□□□ 0.1
VRK3-223ENST00000601341 ESCO1Q5FWF5 840 aa15.66■□□□□ 0.1
VRK3-223ENST00000601341 CADPS2Q86UW7 1296 aa15.66■□□□□ 0.1
VRK3-223ENST00000601341 LRRC7Q96NW7 1537 aa15.66■□□□□ 0.1
VRK3-223ENST00000601341 GGNBP2Q9H3C7 697 aa15.65■□□□□ 0.1
VRK3-223ENST00000601341 TSHZ2Q9NRE2 1034 aa15.65■□□□□ 0.1
VRK3-223ENST00000601341 USP6P35125 1406 aa15.65■□□□□ 0.1
VRK3-223ENST00000601341 TTC21BQ7Z4L5 1316 aa15.64■□□□□ 0.09
VRK3-223ENST00000601341 AKAP12Q02952 1782 aa15.63■□□□□ 0.09
VRK3-223ENST00000601341 MON2Q7Z3U7 1717 aa15.63■□□□□ 0.09
VRK3-223ENST00000601341 TTC21AQ8NDW8 1320 aa15.62■□□□□ 0.09
VRK3-223ENST00000601341 TNNT2P45379 298 aaPredicted RBP15.62■□□□□ 0.09
VRK3-223ENST00000601341 NME9Q86XW9 330 aa15.62■□□□□ 0.09
VRK3-223ENST00000601341 ORAI2Q96SN7 254 aa15.62■□□□□ 0.09
VRK3-223ENST00000601341 C1orf167Q5SNV9 1468 aa15.62■□□□□ 0.09
VRK3-223ENST00000601341 RGPD8O14715 1765 aaPredicted RBP15.61■□□□□ 0.09
VRK3-223ENST00000601341 SSH2Q76I76 1423 aa15.61■□□□□ 0.09
VRK3-223ENST00000601341 FAM9BQ8IZU0 186 aa15.61■□□□□ 0.09
VRK3-223ENST00000601341 PNISRQ8TF01 805 aaKnown RBP15.61■□□□□ 0.09
VRK3-223ENST00000601341 MST1RQ04912 1400 aa15.6■□□□□ 0.09
VRK3-223ENST00000601341 COG3Q96JB2 828 aa15.6■□□□□ 0.09
VRK3-223ENST00000601341 PSME1Q06323 249 aa15.59■□□□□ 0.09
VRK3-223ENST00000601341 SMG6Q86US8 1419 aaKnown RBP15.57■□□□□ 0.08
VRK3-223ENST00000601341 NRKQ7Z2Y5 1582 aa15.57■□□□□ 0.08
VRK3-223ENST00000601341 KIF20BQ96Q89 1820 aa15.57■□□□□ 0.08
VRK3-223ENST00000601341 FOXO3O43524 673 aa15.57■□□□□ 0.08
VRK3-223ENST00000601341 MTHFSP49914 203 aa15.57■□□□□ 0.08
VRK3-223ENST00000601341 XIRP1Q702N8 1843 aaKnown RBP15.56■□□□□ 0.08
VRK3-223ENST00000601341 PAK3O75914 559 aaPredicted RBP15.56■□□□□ 0.08
VRK3-223ENST00000601341 ZRANB1Q9UGI0 708 aa15.56■□□□□ 0.08
VRK3-223ENST00000601341 ANKRD26Q9UPS8 1709 aa15.56■□□□□ 0.08
VRK3-223ENST00000601341 INSRP06213 1382 aa15.55■□□□□ 0.08
VRK3-223ENST00000601341 CFAP53Q96M91 514 aa15.55■□□□□ 0.08
VRK3-223ENST00000601341 SLAIN2Q9P270 581 aa15.55■□□□□ 0.08
VRK3-223ENST00000601341 USP31Q70CQ4 1352 aa15.54■□□□□ 0.08
VRK3-223ENST00000601341 KIF1AQ12756 1690 aa15.54■□□□□ 0.08
VRK3-223ENST00000601341 ABTB2Q8N961 1025 aa15.54■□□□□ 0.08
VRK3-223ENST00000601341 OVOS2A0A0J9YW53 1432 aa15.53■□□□□ 0.08
VRK3-223ENST00000601341 OVOS2Q6IE36 1432 aa15.53■□□□□ 0.08
VRK3-223ENST00000601341 AATKQ6ZMQ8 1374 aa15.53■□□□□ 0.08
VRK3-223ENST00000601341 NLRP6P59044 892 aa15.53■□□□□ 0.08
VRK3-223ENST00000601341 WDR43Q15061 677 aaKnown RBP eCLIP15.52■□□□□ 0.08
VRK3-223ENST00000601341 KRT28Q7Z3Y7 464 aa15.52■□□□□ 0.08
VRK3-223ENST00000601341 PPP4R2Q9NY27 417 aa15.52■□□□□ 0.08
VRK3-223ENST00000601341 NPHP3Q7Z494 1330 aa15.52■□□□□ 0.07
VRK3-223ENST00000601341 LTBP4Q8N2S1 1624 aa15.52■□□□□ 0.07
VRK3-223ENST00000601341 POLKQ9UBT6 870 aa15.52■□□□□ 0.07
VRK3-223ENST00000601341 BRINP3Q76B58 766 aa15.51■□□□□ 0.07
VRK3-223ENST00000601341 XPCQ01831 940 aaPredicted RBP15.5■□□□□ 0.07
VRK3-223ENST00000601341 RNF123Q5XPI4 1314 aa15.49■□□□□ 0.07
VRK3-223ENST00000601341 FBLN1P23142 703 aa15.49■□□□□ 0.07
VRK3-223ENST00000601341 NUTM2GQ5VZR2 741 aa15.48■□□□□ 0.07
VRK3-223ENST00000601341 ADAMTS8Q9UP79 889 aa15.48■□□□□ 0.07
VRK3-223ENST00000601341 PNPLA6Q8IY17 1366 aa15.48■□□□□ 0.07
VRK3-223ENST00000601341 PIK3C2AO00443 1686 aa15.48■□□□□ 0.07
VRK3-223ENST00000601341 PPM1GO15355 546 aaPredicted RBP15.47■□□□□ 0.07
VRK3-223ENST00000601341 NUDCQ9Y266 331 aa15.47■□□□□ 0.07
VRK3-223ENST00000601341 EMILIN1Q9Y6C2 1016 aa15.47■□□□□ 0.07
VRK3-223ENST00000601341 SBNO1A3KN83 1393 aa15.47■□□□□ 0.07
VRK3-223ENST00000601341 RRS1Q15050 365 aaKnown RBP15.47■□□□□ 0.07
VRK3-223ENST00000601341 LMOD2Q6P5Q4 547 aa15.46■□□□□ 0.07
VRK3-223ENST00000601341 DDX17Q92841 729 aaKnown RBP15.46■□□□□ 0.07
VRK3-223ENST00000601341 SOX12O15370 315 aa15.45■□□□□ 0.06
VRK3-223ENST00000601341 DIAPH1O60610 1272 aaKnown RBP15.45■□□□□ 0.06
VRK3-223ENST00000601341 KCNH5Q8NCM2 988 aa15.44■□□□□ 0.06
VRK3-223ENST00000601341 CDK12Q9NYV4 1490 aaPredicted RBP15.44■□□□□ 0.06
VRK3-223ENST00000601341 USP54Q70EL1 1684 aa15.44■□□□□ 0.06
VRK3-223ENST00000601341 PXDNQ92626 1479 aa15.43■□□□□ 0.06
VRK3-223ENST00000601341 TRPM3Q9HCF6 1732 aaPredicted RBP15.43■□□□□ 0.06
VRK3-223ENST00000601341 BLMP54132 1417 aaPredicted RBP15.42■□□□□ 0.06
VRK3-223ENST00000601341 COL3A1P02461 1466 aaPredicted RBP15.42■□□□□ 0.06
VRK3-223ENST00000601341 SOS2Q07890 1332 aaPredicted RBP15.42■□□□□ 0.06
VRK3-223ENST00000601341 MAP3K19Q56UN5 1328 aa15.42■□□□□ 0.06
VRK3-223ENST00000601341 SPATA31A3Q5VYP0 1347 aa15.42■□□□□ 0.06
VRK3-223ENST00000601341 MAP2P11137 1827 aaKnown RBP15.42■□□□□ 0.06
VRK3-223ENST00000601341 U2AF1L5P0DN76 240 aaPredicted RBP15.41■□□□□ 0.06
VRK3-223ENST00000601341 U2AF1Q01081 240 aaKnown RBP eCLIP15.41■□□□□ 0.06
VRK3-223ENST00000601341 PDE3BQ13370 1112 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 KIF24Q5T7B8 1368 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 TNS3Q68CZ2 1445 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 U2SURPO15042 1029 aaKnown RBP15.41■□□□□ 0.06
VRK3-223ENST00000601341 GCP02774 474 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 AMPHP49418 695 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 RBM19Q9Y4C8 960 aaKnown RBP15.41■□□□□ 0.06
VRK3-223ENST00000601341 USP19O94966 1318 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 ARHGEF10O15013 1369 aa15.41■□□□□ 0.06
VRK3-223ENST00000601341 FLT4P35916 1363 aa15.4■□□□□ 0.06
VRK3-223ENST00000601341 TOM1O60784 492 aa15.39■□□□□ 0.05
VRK3-223ENST00000601341 IL13P35225 146 aa15.39■□□□□ 0.05
VRK3-223ENST00000601341 SHPRHQ149N8 1683 aa15.39■□□□□ 0.05
VRK3-223ENST00000601341 MARF1Q9Y4F3 1742 aaKnown RBP15.39■□□□□ 0.05
VRK3-223ENST00000601341 ALS2Q96Q42 1657 aa15.38■□□□□ 0.05
VRK3-223ENST00000601341 HSP90AB2PQ58FF8 381 aa15.38■□□□□ 0.05
VRK3-223ENST00000601341 SLIT3O75094 1523 aa15.37■□□□□ 0.05
VRK3-223ENST00000601341 PNNQ9H307 717 aaKnown RBP15.37■□□□□ 0.05
VRK3-223ENST00000601341 NFAT5O94916 1531 aa15.37■□□□□ 0.05
VRK3-223ENST00000601341 CCDC146Q8IYE0 955 aa15.36■□□□□ 0.05
VRK3-223ENST00000601341 RUNDC1Q96C34 613 aa15.36■□□□□ 0.05
VRK3-223ENST00000601341 RTL1A6NKG5 1358 aa15.36■□□□□ 0.05
VRK3-223ENST00000601341 HOXC9P31274 260 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms