RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ZKSCAN2Q63HK3 967 aa25.87■■□□□ 1.73
SHKBP1-225ENST00000600733 NLRP1Q9C000 1473 aa25.86■■□□□ 1.73
SHKBP1-225ENST00000600733 FTSJ3Q8IY81 847 aaKnown RBP25.86■■□□□ 1.73
SHKBP1-225ENST00000600733 DZIP1LQ8IYY4 767 aaKnown RBP25.85■■□□□ 1.73
SHKBP1-225ENST00000600733 RWDD1Q9H446 243 aaPredicted RBP25.85■■□□□ 1.73
SHKBP1-225ENST00000600733 ANKRD26Q9UPS8 1709 aa25.85■■□□□ 1.73
SHKBP1-225ENST00000600733 SMC4Q9NTJ3 1288 aa25.85■■□□□ 1.73
SHKBP1-225ENST00000600733 CLTCQ00610 1675 aaKnown RBP25.84■■□□□ 1.73
SHKBP1-225ENST00000600733 CT47B1P0C2W7 299 aaPredicted RBP25.82■■□□□ 1.72
SHKBP1-225ENST00000600733 FRAT2O75474 233 aaPredicted RBP25.81■■□□□ 1.72
SHKBP1-225ENST00000600733 SSH1Q8WYL5 1049 aa25.81■■□□□ 1.72
SHKBP1-225ENST00000600733 CDK19Q9BWU1 502 aa25.81■■□□□ 1.72
SHKBP1-225ENST00000600733 MED14O60244 1454 aa25.81■■□□□ 1.72
SHKBP1-225ENST00000600733 TRIM27P14373 513 aa25.81■■□□□ 1.72
SHKBP1-225ENST00000600733 GSE1Q14687 1217 aa25.81■■□□□ 1.72
SHKBP1-225ENST00000600733 ALKQ9UM73 1620 aa25.8■■□□□ 1.72
SHKBP1-225ENST00000600733 CABP1Q9NZU7 370 aa25.8■■□□□ 1.72
SHKBP1-225ENST00000600733 RIPK4P57078 832 aa25.8■■□□□ 1.72
SHKBP1-225ENST00000600733 DIAPH1O60610 1272 aaKnown RBP25.79■■□□□ 1.72
SHKBP1-225ENST00000600733 HDGFL2Q7Z4V5 671 aaPredicted RBP25.79■■□□□ 1.72
SHKBP1-225ENST00000600733 ARHGEF40Q8TER5 1519 aa25.78■■□□□ 1.72
SHKBP1-225ENST00000600733 IL27Q8NEV9 243 aa25.77■■□□□ 1.72
SHKBP1-225ENST00000600733 STAG3Q9UJ98 1225 aa25.77■■□□□ 1.72
SHKBP1-225ENST00000600733 ZMYM3Q14202 1370 aa25.77■■□□□ 1.72
SHKBP1-225ENST00000600733 ITPRIPQ8IWB1 547 aa25.76■■□□□ 1.71
SHKBP1-225ENST00000600733 PNPLA6Q8IY17 1366 aa25.76■■□□□ 1.71
SHKBP1-225ENST00000600733 FBLN1P23142 703 aa25.75■■□□□ 1.71
SHKBP1-225ENST00000600733 ATF7IPQ6VMQ6 1270 aa25.75■■□□□ 1.71
SHKBP1-225ENST00000600733 NOB1Q9ULX3 412 aaKnown RBP25.75■■□□□ 1.71
SHKBP1-225ENST00000600733 IL16Q14005 1332 aa25.75■■□□□ 1.71
SHKBP1-225ENST00000600733 KIF20BQ96Q89 1820 aa25.74■■□□□ 1.71
SHKBP1-225ENST00000600733 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.74■■□□□ 1.71
SHKBP1-225ENST00000600733 BECN1Q14457 450 aa25.72■■□□□ 1.71
SHKBP1-225ENST00000600733 TBC1D32Q96NH3 1257 aa25.72■■□□□ 1.71
SHKBP1-225ENST00000600733 UPF2Q9HAU5 1272 aaKnown RBP25.72■■□□□ 1.71
SHKBP1-225ENST00000600733 WAPLQ7Z5K2 1190 aa25.72■■□□□ 1.71
SHKBP1-225ENST00000600733 DDX19BQ9UMR2 479 aa25.72■■□□□ 1.71
SHKBP1-225ENST00000600733 LRRC7Q96NW7 1537 aa25.71■■□□□ 1.71
SHKBP1-225ENST00000600733 TMEM57Q8N5G2 664 aa25.7■■□□□ 1.7
SHKBP1-225ENST00000600733 SLKQ9H2G2 1235 aaPredicted RBP25.7■■□□□ 1.7
SHKBP1-225ENST00000600733 HDAC1Q13547 482 aaPredicted RBP25.68■■□□□ 1.7
SHKBP1-225ENST00000600733 PNNQ9H307 717 aaKnown RBP25.68■■□□□ 1.7
SHKBP1-225ENST00000600733 FCHSD2O94868 740 aa25.67■■□□□ 1.7
SHKBP1-225ENST00000600733 PRKAR2BP31323 418 aa25.67■■□□□ 1.7
SHKBP1-225ENST00000600733 POLKQ9UBT6 870 aa25.67■■□□□ 1.7
SHKBP1-225ENST00000600733 CYB5RLQ6IPT4 315 aa25.66■■□□□ 1.7
SHKBP1-225ENST00000600733 RSPH6AQ9H0K4 717 aa25.66■■□□□ 1.7
SHKBP1-225ENST00000600733 CDC42BPGQ6DT37 1551 aa25.65■■□□□ 1.7
SHKBP1-225ENST00000600733 KIF16BQ96L93 1317 aa25.64■■□□□ 1.7
SHKBP1-225ENST00000600733 ZBTB40Q9NUA8 1239 aa25.64■■□□□ 1.7
SHKBP1-225ENST00000600733 FAM135BQ49AJ0 1406 aa25.64■■□□□ 1.69
SHKBP1-225ENST00000600733 A2ML1A8K2U0 1454 aa25.63■■□□□ 1.69
SHKBP1-225ENST00000600733 HMOX1P09601 288 aa25.63■■□□□ 1.69
SHKBP1-225ENST00000600733 TBC1D2Q9BYX2 928 aa25.63■■□□□ 1.69
SHKBP1-225ENST00000600733 MAP2P11137 1827 aaKnown RBP25.63■■□□□ 1.69
SHKBP1-225ENST00000600733 PHACTR3Q96KR7 559 aa25.62■■□□□ 1.69
SHKBP1-225ENST00000600733 IPO8O15397 1037 aaKnown RBP25.62■■□□□ 1.69
SHKBP1-225ENST00000600733 FAM69CQ0P6D2 419 aa25.62■■□□□ 1.69
SHKBP1-225ENST00000600733 SMC5Q8IY18 1101 aa25.62■■□□□ 1.69
SHKBP1-225ENST00000600733 ATP7BP35670 1465 aa25.62■■□□□ 1.69
SHKBP1-225ENST00000600733 RTN4Q9NQC3 1192 aaKnown RBP25.61■■□□□ 1.69
SHKBP1-225ENST00000600733 BRPF3Q9ULD4 1205 aa25.61■■□□□ 1.69
SHKBP1-225ENST00000600733 DLC1Q96QB1 1528 aa25.61■■□□□ 1.69
SHKBP1-225ENST00000600733 THUMPD2Q9BTF0 503 aaKnown RBP25.61■■□□□ 1.69
SHKBP1-225ENST00000600733 ANTXR1Q9H6X2 564 aa25.61■■□□□ 1.69
SHKBP1-225ENST00000600733 ALDH1L2Q3SY69 923 aa25.6■■□□□ 1.69
SHKBP1-225ENST00000600733 SETD1AO15047 1707 aaKnown RBP25.6■■□□□ 1.69
SHKBP1-225ENST00000600733 RIMS2Q9UQ26 1411 aa25.6■■□□□ 1.69
SHKBP1-225ENST00000600733 EMILIN1Q9Y6C2 1016 aa25.6■■□□□ 1.69
SHKBP1-225ENST00000600733 RIMBP3CA6NJZ7 1639 aa25.59■■□□□ 1.69
SHKBP1-225ENST00000600733 RIMBP3BA6NNM3 1639 aa25.59■■□□□ 1.69
SHKBP1-225ENST00000600733 RIMBP3Q9UFD9 1639 aa25.59■■□□□ 1.69
SHKBP1-225ENST00000600733 TSPOAP1O95153 1857 aa25.59■■□□□ 1.69
SHKBP1-225ENST00000600733 MFAP1P55081 439 aaKnown RBP25.58■■□□□ 1.69
SHKBP1-225ENST00000600733 MLECQ14165 292 aa25.57■■□□□ 1.68
SHKBP1-225ENST00000600733 NFE2L2Q16236 605 aa25.57■■□□□ 1.68
SHKBP1-225ENST00000600733 NME9Q86XW9 330 aa25.57■■□□□ 1.68
SHKBP1-225ENST00000600733 ZRANB1Q9UGI0 708 aa25.56■■□□□ 1.68
SHKBP1-225ENST00000600733 C22orf23Q9BZE7 217 aa25.56■■□□□ 1.68
SHKBP1-225ENST00000600733 SPATA31D1Q6ZQQ2 1576 aa25.55■■□□□ 1.68
SHKBP1-225ENST00000600733 PPIP5K1Q6PFW1 1433 aa25.54■■□□□ 1.68
SHKBP1-225ENST00000600733 CPSF1Q10570 1443 aaKnown RBP25.53■■□□□ 1.68
SHKBP1-225ENST00000600733 TSPYL6Q8N831 410 aa25.53■■□□□ 1.68
SHKBP1-225ENST00000600733 SPRYD3Q8NCJ5 442 aa25.53■■□□□ 1.68
SHKBP1-225ENST00000600733 WASLO00401 505 aaPredicted RBP25.53■■□□□ 1.68
SHKBP1-225ENST00000600733 AGLP35573 1532 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 IL13P35225 146 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 LNPKQ9C0E8 428 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 NCKAP5LQ9HCH0 1330 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 EDC4Q6P2E9 1401 aaKnown RBP25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 VAMP4O75379 141 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 NUCB1Q02818 461 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 DIP2BQ9P265 1576 aa25.52■■□□□ 1.68
SHKBP1-225ENST00000600733 ELL2O00472 640 aaPredicted RBP25.51■■□□□ 1.67
SHKBP1-225ENST00000600733 PPP6R1Q9UPN7 881 aa25.51■■□□□ 1.67
SHKBP1-225ENST00000600733 METP08581 1390 aa25.51■■□□□ 1.67
SHKBP1-225ENST00000600733 REREQ9P2R6 1566 aa25.51■■□□□ 1.67
SHKBP1-225ENST00000600733 BRPF1P55201 1214 aaPredicted RBP25.51■■□□□ 1.67
SHKBP1-225ENST00000600733 TXNDC2Q86VQ3 553 aa25.51■■□□□ 1.67
SHKBP1-225ENST00000600733 ZNF428Q96B54 188 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms