RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SPATA31A6Q5VVP1 1343 aa26.87■■□□□ 1.89
UPF1-209ENST00000600310 POLR3GLQ9BT43 218 aa26.86■■□□□ 1.89
UPF1-209ENST00000600310 SHPRHQ149N8 1683 aa26.85■■□□□ 1.89
UPF1-209ENST00000600310 ARHGEF10O15013 1369 aa26.85■■□□□ 1.89
UPF1-209ENST00000600310 KTN1Q86UP2 1357 aaKnown RBP26.85■■□□□ 1.89
UPF1-209ENST00000600310 A0A1W2PP64 1363 aa26.84■■□□□ 1.89
UPF1-209ENST00000600310 LMOD2Q6P5Q4 547 aa26.84■■□□□ 1.89
UPF1-209ENST00000600310 KIF7Q2M1P5 1343 aa26.84■■□□□ 1.89
UPF1-209ENST00000600310 ANKRD36BQ8N2N9 1353 aa26.84■■□□□ 1.89
UPF1-209ENST00000600310 AKAP12Q02952 1782 aa26.82■■□□□ 1.88
UPF1-209ENST00000600310 TTC21BQ7Z4L5 1316 aa26.82■■□□□ 1.88
UPF1-209ENST00000600310 TTC21AQ8NDW8 1320 aa26.8■■□□□ 1.88
UPF1-209ENST00000600310 COL22A1Q8NFW1 1626 aaPredicted RBP26.79■■□□□ 1.88
UPF1-209ENST00000600310 ALS2Q96Q42 1657 aa26.79■■□□□ 1.88
UPF1-209ENST00000600310 ABTB2Q8N961 1025 aa26.79■■□□□ 1.88
UPF1-209ENST00000600310 CCDC7Q96M83 1385 aa26.78■■□□□ 1.88
UPF1-209ENST00000600310 EDC4Q6P2E9 1401 aaKnown RBP26.78■■□□□ 1.88
UPF1-209ENST00000600310 MYOM1P52179 1685 aa26.78■■□□□ 1.88
UPF1-209ENST00000600310 MON2Q7Z3U7 1717 aa26.78■■□□□ 1.88
UPF1-209ENST00000600310 WASHC2AQ641Q2 1341 aa26.77■■□□□ 1.88
UPF1-209ENST00000600310 NUTM2BA6NNL0 878 aaPredicted RBP26.76■■□□□ 1.87
UPF1-209ENST00000600310 NUTM2EB1AL46 878 aaPredicted RBP26.76■■□□□ 1.87
UPF1-209ENST00000600310 NUTM2AQ8IVF1 878 aaPredicted RBP26.76■■□□□ 1.87
UPF1-209ENST00000600310 NRKQ7Z2Y5 1582 aa26.75■■□□□ 1.87
UPF1-209ENST00000600310 NUTM2GQ5VZR2 741 aa26.74■■□□□ 1.87
UPF1-209ENST00000600310 NLRP13Q86W25 1043 aa26.74■■□□□ 1.87
UPF1-209ENST00000600310 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.74■■□□□ 1.87
UPF1-209ENST00000600310 CABLES1Q8TDN4 633 aa26.74■■□□□ 1.87
UPF1-209ENST00000600310 RGS17Q9UGC6 210 aaPredicted RBP26.74■■□□□ 1.87
UPF1-209ENST00000600310 LRP6O75581 1613 aa26.73■■□□□ 1.87
UPF1-209ENST00000600310 CARD14Q9BXL6 1004 aa26.73■■□□□ 1.87
UPF1-209ENST00000600310 NLRP6P59044 892 aa26.72■■□□□ 1.87
UPF1-209ENST00000600310 PANK3Q9H999 370 aa26.71■■□□□ 1.87
UPF1-209ENST00000600310 USP19O94966 1318 aa26.7■■□□□ 1.87
UPF1-209ENST00000600310 PLEKHG5O94827 1062 aa26.7■■□□□ 1.86
UPF1-209ENST00000600310 NME9Q86XW9 330 aa26.7■■□□□ 1.86
UPF1-209ENST00000600310 HAP1P54257 671 aaPredicted RBP26.69■■□□□ 1.86
UPF1-209ENST00000600310 USP31Q70CQ4 1352 aa26.69■■□□□ 1.86
UPF1-209ENST00000600310 ADAMTS2O95450 1211 aa26.68■■□□□ 1.86
UPF1-209ENST00000600310 PIK3C2AO00443 1686 aa26.67■■□□□ 1.86
UPF1-209ENST00000600310 NSD3Q9BZ95 1437 aa26.67■■□□□ 1.86
UPF1-209ENST00000600310 MEX3CQ5U5Q3 659 aaKnown RBP26.66■■□□□ 1.86
UPF1-209ENST00000600310 ZRANB1Q9UGI0 708 aa26.65■■□□□ 1.86
UPF1-209ENST00000600310 FYB1O15117 783 aa26.64■■□□□ 1.86
UPF1-209ENST00000600310 GCP02774 474 aa26.63■■□□□ 1.85
UPF1-209ENST00000600310 CRYBG1Q9Y4K1 1723 aa26.62■■□□□ 1.85
UPF1-209ENST00000600310 ABCA3Q99758 1704 aa26.62■■□□□ 1.85
UPF1-209ENST00000600310 SLIT3O75094 1523 aa26.61■■□□□ 1.85
UPF1-209ENST00000600310 CGNL1Q0VF96 1302 aa26.61■■□□□ 1.85
UPF1-209ENST00000600310 OVOS2A0A0J9YW53 1432 aa26.6■■□□□ 1.85
UPF1-209ENST00000600310 OVOS2Q6IE36 1432 aa26.6■■□□□ 1.85
UPF1-209ENST00000600310 C8orf37Q96NL8 207 aa26.6■■□□□ 1.85
UPF1-209ENST00000600310 KCNH5Q8NCM2 988 aa26.59■■□□□ 1.85
UPF1-209ENST00000600310 COG3Q96JB2 828 aa26.59■■□□□ 1.85
UPF1-209ENST00000600310 PHRF1Q9P1Y6 1649 aaKnown RBP26.58■■□□□ 1.85
UPF1-209ENST00000600310 GGNBP2Q9H3C7 697 aa26.58■■□□□ 1.85
UPF1-209ENST00000600310 USP54Q70EL1 1684 aa26.57■■□□□ 1.84
UPF1-209ENST00000600310 PER1O15534 1290 aaPredicted RBP26.57■■□□□ 1.84
UPF1-209ENST00000600310 POTEAQ6S8J7 498 aa26.57■■□□□ 1.84
UPF1-209ENST00000600310 NGLY1Q96IV0 654 aa26.57■■□□□ 1.84
UPF1-209ENST00000600310 KNSTRNQ9Y448 316 aa26.57■■□□□ 1.84
UPF1-209ENST00000600310 MARF1Q9Y4F3 1742 aaKnown RBP26.56■■□□□ 1.84
UPF1-209ENST00000600310 FAM83GA6ND36 823 aa26.56■■□□□ 1.84
UPF1-209ENST00000600310 ZC3H6P61129 1189 aaKnown RBP26.56■■□□□ 1.84
UPF1-209ENST00000600310 CPDO75976 1380 aa26.56■■□□□ 1.84
UPF1-209ENST00000600310 KIAA0232Q92628 1395 aa26.56■■□□□ 1.84
UPF1-209ENST00000600310 FNBP4Q8N3X1 1017 aaPredicted RBP26.55■■□□□ 1.84
UPF1-209ENST00000600310 PRDM11Q9NQV5 511 aa26.55■■□□□ 1.84
UPF1-209ENST00000600310 AFF2P51816 1311 aa26.53■■□□□ 1.84
UPF1-209ENST00000600310 SOX12O15370 315 aa26.52■■□□□ 1.84
UPF1-209ENST00000600310 AMER1Q5JTC6 1135 aaPredicted RBP26.51■■□□□ 1.83
UPF1-209ENST00000600310 ARHGEF25Q86VW2 580 aa26.51■■□□□ 1.83
UPF1-209ENST00000600310 NFAT5O94916 1531 aa26.5■■□□□ 1.83
UPF1-209ENST00000600310 NSD2O96028 1365 aa26.5■■□□□ 1.83
UPF1-209ENST00000600310 ZNF316A6NFI3 1004 aaPredicted RBP26.5■■□□□ 1.83
UPF1-209ENST00000600310 SLIT2O94813 1529 aa26.49■■□□□ 1.83
UPF1-209ENST00000600310 KIF20BQ96Q89 1820 aa26.49■■□□□ 1.83
UPF1-209ENST00000600310 CHRNA2Q15822 529 aa26.49■■□□□ 1.83
UPF1-209ENST00000600310 ZNF772Q68DY9 489 aaPredicted RBP26.49■■□□□ 1.83
UPF1-209ENST00000600310 USP21Q9UK80 565 aa26.48■■□□□ 1.83
UPF1-209ENST00000600310 AATKQ6ZMQ8 1374 aa26.46■■□□□ 1.83
UPF1-209ENST00000600310 BCL9LQ86UU0 1499 aa26.46■■□□□ 1.83
UPF1-209ENST00000600310 COL14A1Q05707 1796 aaKnown RBP26.46■■□□□ 1.83
UPF1-209ENST00000600310 UNC5CLQ8IV45 518 aa26.45■■□□□ 1.82
UPF1-209ENST00000600310 BTG4Q9NY30 223 aa26.45■■□□□ 1.82
UPF1-209ENST00000600310 NPC1L1Q9UHC9 1359 aa26.45■■□□□ 1.82
UPF1-209ENST00000600310 ZBTB7CA1YPR0 619 aa26.44■■□□□ 1.82
UPF1-209ENST00000600310 FBLN1P23142 703 aa26.43■■□□□ 1.82
UPF1-209ENST00000600310 DDX10Q13206 875 aaKnown RBP26.43■■□□□ 1.82
UPF1-209ENST00000600310 MAP3K19Q56UN5 1328 aa26.4■■□□□ 1.82
UPF1-209ENST00000600310 MORC1Q86VD1 984 aa26.4■■□□□ 1.82
UPF1-209ENST00000600310 TRPC5Q9UL62 973 aaPredicted RBP26.4■■□□□ 1.82
UPF1-209ENST00000600310 PLCH1Q4KWH8 1693 aa26.4■■□□□ 1.82
UPF1-209ENST00000600310 NWD2Q9ULI1 1742 aa26.39■■□□□ 1.82
UPF1-209ENST00000600310 LMO7Q8WWI1 1683 aa26.39■■□□□ 1.82
UPF1-209ENST00000600310 CAMTA1Q9Y6Y1 1673 aa26.39■■□□□ 1.82
UPF1-209ENST00000600310 CC2D1BQ5T0F9 858 aaKnown RBP26.39■■□□□ 1.82
UPF1-209ENST00000600310 QTRT2Q9H974 415 aaKnown RBP26.39■■□□□ 1.82
UPF1-209ENST00000600310 RRS1Q15050 365 aaKnown RBP26.38■■□□□ 1.81
UPF1-209ENST00000600310 AXIN2Q9Y2T1 843 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms