RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TMC1Q8TDI8 760 aa21.36■■□□□ 1.01
LIG1-219ENST00000600055 NGLY1Q96IV0 654 aa21.36■■□□□ 1.01
LIG1-219ENST00000600055 SLC12A5Q9H2X9 1139 aa21.36■■□□□ 1.01
LIG1-219ENST00000600055 PUS7Q96PZ0 661 aaKnown RBP21.35■■□□□ 1.01
LIG1-219ENST00000600055 USP6P35125 1406 aa21.35■■□□□ 1.01
LIG1-219ENST00000600055 SLC24A1O60721 1099 aa21.34■■□□□ 1.01
LIG1-219ENST00000600055 TMF1P82094 1093 aa21.34■■□□□ 1.01
LIG1-219ENST00000600055 HSPA5P11021 654 aaKnown RBP21.33■■□□□ 1.01
LIG1-219ENST00000600055 ABTB2Q8N961 1025 aa21.33■■□□□ 1.01
LIG1-219ENST00000600055 CPSF1Q10570 1443 aaKnown RBP21.32■■□□□ 1
LIG1-219ENST00000600055 EIF4G2P78344 907 aaKnown RBP eCLIP21.32■■□□□ 1
LIG1-219ENST00000600055 ZNF772Q68DY9 489 aaPredicted RBP21.32■■□□□ 1
LIG1-219ENST00000600055 ZNF692Q9BU19 519 aaPredicted RBP21.32■■□□□ 1
LIG1-219ENST00000600055 SSH2Q76I76 1423 aa21.31■■□□□ 1
LIG1-219ENST00000600055 CD163L1Q9NR16 1453 aa21.31■■□□□ 1
LIG1-219ENST00000600055 ABCA3Q99758 1704 aa21.29■■□□□ 1
LIG1-219ENST00000600055 BRD4O60885 1362 aaPredicted RBP21.29■■□□□ 1
LIG1-219ENST00000600055 KTN1Q86UP2 1357 aaKnown RBP21.29■■□□□ 1
LIG1-219ENST00000600055 FNBP4Q8N3X1 1017 aaPredicted RBP21.29■■□□□ 1
LIG1-219ENST00000600055 TTC21BQ7Z4L5 1316 aa21.29■■□□□ 1
LIG1-219ENST00000600055 USP21Q9UK80 565 aa21.28■■□□□ 1
LIG1-219ENST00000600055 HDGFL2Q7Z4V5 671 aaPredicted RBP21.27■■□□□ 1
LIG1-219ENST00000600055 AKAP12Q02952 1782 aa21.27■■□□□ 1
LIG1-219ENST00000600055 FAM83GA6ND36 823 aa21.26■□□□□ 0.99
LIG1-219ENST00000600055 QTRT2Q9H974 415 aaKnown RBP21.26■□□□□ 0.99
LIG1-219ENST00000600055 MARF1Q9Y4F3 1742 aaKnown RBP21.26■□□□□ 0.99
LIG1-219ENST00000600055 CRYBG1Q9Y4K1 1723 aa21.26■□□□□ 0.99
LIG1-219ENST00000600055 A0A1W2PP64 1363 aa21.25■□□□□ 0.99
LIG1-219ENST00000600055 NLRP6P59044 892 aa21.25■□□□□ 0.99
LIG1-219ENST00000600055 CDCA8Q53HL2 280 aa21.25■□□□□ 0.99
LIG1-219ENST00000600055 NLRP13Q86W25 1043 aa21.25■□□□□ 0.99
LIG1-219ENST00000600055 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.25■□□□□ 0.99
LIG1-219ENST00000600055 TERF2IPQ9NYB0 399 aa21.25■□□□□ 0.99
LIG1-219ENST00000600055 USP19O94966 1318 aa21.25■□□□□ 0.99
LIG1-219ENST00000600055 BCL9LQ86UU0 1499 aa21.24■□□□□ 0.99
LIG1-219ENST00000600055 NINLQ9Y2I6 1382 aa21.23■□□□□ 0.99
LIG1-219ENST00000600055 ZC3H6P61129 1189 aaKnown RBP21.23■□□□□ 0.99
LIG1-219ENST00000600055 SLIT2O94813 1529 aa21.23■□□□□ 0.99
LIG1-219ENST00000600055 TTC21AQ8NDW8 1320 aa21.23■□□□□ 0.99
LIG1-219ENST00000600055 NRKQ7Z2Y5 1582 aa21.23■□□□□ 0.99
LIG1-219ENST00000600055 ZRANB1Q9UGI0 708 aa21.22■□□□□ 0.99
LIG1-219ENST00000600055 PHRF1Q9P1Y6 1649 aaKnown RBP21.22■□□□□ 0.99
LIG1-219ENST00000600055 PIK3C2AO00443 1686 aa21.21■□□□□ 0.99
LIG1-219ENST00000600055 MON2Q7Z3U7 1717 aa21.21■□□□□ 0.99
LIG1-219ENST00000600055 RXRBP28702 533 aa21.21■□□□□ 0.99
LIG1-219ENST00000600055 POLR3GLQ9BT43 218 aa21.21■□□□□ 0.99
LIG1-219ENST00000600055 KIAA0232Q92628 1395 aa21.21■□□□□ 0.99
LIG1-219ENST00000600055 GCP02774 474 aa21.2■□□□□ 0.98
LIG1-219ENST00000600055 CHRNA2Q15822 529 aa21.2■□□□□ 0.98
LIG1-219ENST00000600055 NME9Q86XW9 330 aa21.2■□□□□ 0.98
LIG1-219ENST00000600055 UNC5CLQ8IV45 518 aa21.2■□□□□ 0.98
LIG1-219ENST00000600055 PRDM11Q9NQV5 511 aa21.2■□□□□ 0.98
LIG1-219ENST00000600055 TRPC5Q9UL62 973 aaPredicted RBP21.2■□□□□ 0.98
LIG1-219ENST00000600055 ATRNO75882 1429 aa21.2■□□□□ 0.98
LIG1-219ENST00000600055 EDC4Q6P2E9 1401 aaKnown RBP21.2■□□□□ 0.98
LIG1-219ENST00000600055 ANKRD36BQ8N2N9 1353 aa21.19■□□□□ 0.98
LIG1-219ENST00000600055 C11orf95C9JLR9 678 aaPredicted RBP21.18■□□□□ 0.98
LIG1-219ENST00000600055 BTG4Q9NY30 223 aa21.18■□□□□ 0.98
LIG1-219ENST00000600055 RBM6P78332 1123 aaKnown RBP21.17■□□□□ 0.98
LIG1-219ENST00000600055 PLCH1Q4KWH8 1693 aa21.16■□□□□ 0.98
LIG1-219ENST00000600055 SLIT3O75094 1523 aa21.16■□□□□ 0.98
LIG1-219ENST00000600055 SOX12O15370 315 aa21.16■□□□□ 0.98
LIG1-219ENST00000600055 ZBTB7CA1YPR0 619 aa21.15■□□□□ 0.98
LIG1-219ENST00000600055 COL14A1Q05707 1796 aaKnown RBP21.15■□□□□ 0.98
LIG1-219ENST00000600055 USP31Q70CQ4 1352 aa21.14■□□□□ 0.98
LIG1-219ENST00000600055 CPDO75976 1380 aa21.13■□□□□ 0.97
LIG1-219ENST00000600055 MYOM1P52179 1685 aa21.13■□□□□ 0.97
LIG1-219ENST00000600055 GJD4Q96KN9 370 aaPredicted RBP21.13■□□□□ 0.97
LIG1-219ENST00000600055 VPS72Q15906 364 aa21.12■□□□□ 0.97
LIG1-219ENST00000600055 CARD14Q9BXL6 1004 aa21.12■□□□□ 0.97
LIG1-219ENST00000600055 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.12■□□□□ 0.97
LIG1-219ENST00000600055 SOCS7O14512 581 aa21.11■□□□□ 0.97
LIG1-219ENST00000600055 NWD2Q9ULI1 1742 aa21.11■□□□□ 0.97
LIG1-219ENST00000600055 KCNH5Q8NCM2 988 aa21.1■□□□□ 0.97
LIG1-219ENST00000600055 CCDC9Q9Y3X0 531 aaKnown RBP21.1■□□□□ 0.97
LIG1-219ENST00000600055 NRAPQ86VF7 1730 aa21.09■□□□□ 0.97
LIG1-219ENST00000600055 STRN4Q9NRL3 753 aa21.09■□□□□ 0.97
LIG1-219ENST00000600055 RGS12O14924 1447 aa21.09■□□□□ 0.97
LIG1-219ENST00000600055 CDK12Q9NYV4 1490 aaPredicted RBP21.08■□□□□ 0.97
LIG1-219ENST00000600055 OVOS2A0A0J9YW53 1432 aa21.08■□□□□ 0.97
LIG1-219ENST00000600055 OVOS2Q6IE36 1432 aa21.08■□□□□ 0.97
LIG1-219ENST00000600055 ARHGEF25Q86VW2 580 aa21.08■□□□□ 0.97
LIG1-219ENST00000600055 CAMTA1Q9Y6Y1 1673 aa21.08■□□□□ 0.96
LIG1-219ENST00000600055 NFAT5O94916 1531 aa21.08■□□□□ 0.96
LIG1-219ENST00000600055 KIF7Q2M1P5 1343 aa21.07■□□□□ 0.96
LIG1-219ENST00000600055 GLI3P10071 1580 aa21.07■□□□□ 0.96
LIG1-219ENST00000600055 NSD3Q9BZ95 1437 aa21.07■□□□□ 0.96
LIG1-219ENST00000600055 FYB1O15117 783 aa21.07■□□□□ 0.96
LIG1-219ENST00000600055 GGNBP2Q9H3C7 697 aa21.07■□□□□ 0.96
LIG1-219ENST00000600055 USP54Q70EL1 1684 aa21.05■□□□□ 0.96
LIG1-219ENST00000600055 LMO7Q8WWI1 1683 aa21.05■□□□□ 0.96
LIG1-219ENST00000600055 EVA1CP58658 441 aa21.05■□□□□ 0.96
LIG1-219ENST00000600055 COG3Q96JB2 828 aa21.05■□□□□ 0.96
LIG1-219ENST00000600055 AXIN2Q9Y2T1 843 aa21.05■□□□□ 0.96
LIG1-219ENST00000600055 AATKQ6ZMQ8 1374 aa21.05■□□□□ 0.96
LIG1-219ENST00000600055 FBLN1P23142 703 aa21.04■□□□□ 0.96
LIG1-219ENST00000600055 PANK3Q9H999 370 aa21.04■□□□□ 0.96
LIG1-219ENST00000600055 SPATA31A5Q5VU36 1347 aa21.04■□□□□ 0.96
LIG1-219ENST00000600055 SPATA31A7Q8IWB4 1347 aa21.04■□□□□ 0.96
LIG1-219ENST00000600055 LARP1Q6PKG0 1096 aaKnown RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms