RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 CPSF1Q10570 1443 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-216ENST00000598201 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.53■■□□□ 1.2
SHKBP1-216ENST00000598201 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.53■■□□□ 1.2
SHKBP1-216ENST00000598201 CFAP53Q96M91 514 aa22.53■■□□□ 1.2
SHKBP1-216ENST00000598201 PRR36Q9H6K5 1346 aa22.52■■□□□ 1.2
SHKBP1-216ENST00000598201 C14orf37Q86TY3 774 aa22.51■■□□□ 1.19
SHKBP1-216ENST00000598201 CCDC61Q9Y6R9 512 aa22.51■■□□□ 1.19
SHKBP1-216ENST00000598201 KIF20BQ96Q89 1820 aa22.5■■□□□ 1.19
SHKBP1-216ENST00000598201 NCOA3Q9Y6Q9 1424 aa22.5■■□□□ 1.19
SHKBP1-216ENST00000598201 RRP1P56182 461 aaKnown RBP22.49■■□□□ 1.19
SHKBP1-216ENST00000598201 GOLGA2Q08379 1002 aa22.49■■□□□ 1.19
SHKBP1-216ENST00000598201 ADGRB2O60241 1585 aa22.49■■□□□ 1.19
SHKBP1-216ENST00000598201 DUSP27Q5VZP5 1158 aa22.48■■□□□ 1.19
SHKBP1-216ENST00000598201 CDC42BPGQ6DT37 1551 aa22.47■■□□□ 1.19
SHKBP1-216ENST00000598201 CERKQ8TCT0 537 aa22.47■■□□□ 1.19
SHKBP1-216ENST00000598201 XIRP1Q702N8 1843 aaKnown RBP22.47■■□□□ 1.19
SHKBP1-216ENST00000598201 C19orf44Q9H6X5 657 aa22.46■■□□□ 1.19
SHKBP1-216ENST00000598201 EDC4Q6P2E9 1401 aaKnown RBP22.46■■□□□ 1.19
SHKBP1-216ENST00000598201 COL3A1P02461 1466 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-216ENST00000598201 SPINK5Q9NQ38 1064 aaPredicted RBP22.46■■□□□ 1.19
SHKBP1-216ENST00000598201 SLFN5Q08AF3 891 aa22.45■■□□□ 1.18
SHKBP1-216ENST00000598201 RUNDC1Q96C34 613 aa22.45■■□□□ 1.18
SHKBP1-216ENST00000598201 B4GALNT3Q6L9W6 998 aa22.45■■□□□ 1.18
SHKBP1-216ENST00000598201 ADGRL3Q9HAR2 1447 aa22.44■■□□□ 1.18
SHKBP1-216ENST00000598201 FBLN1P23142 703 aa22.44■■□□□ 1.18
SHKBP1-216ENST00000598201 MSH6P52701 1360 aa22.44■■□□□ 1.18
SHKBP1-216ENST00000598201 NME9Q86XW9 330 aa22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 IQSEC2Q5JU85 1478 aa22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 NUTM2FA1L443 756 aa22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 U2AF1L5P0DN76 240 aaPredicted RBP22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 U2AF1Q01081 240 aaKnown RBP eCLIP22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 TRMT2AQ8IZ69 625 aaKnown RBP22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 NGEFQ8N5V2 710 aa22.43■■□□□ 1.18
SHKBP1-216ENST00000598201 ZRANB1Q9UGI0 708 aa22.42■■□□□ 1.18
SHKBP1-216ENST00000598201 MON2Q7Z3U7 1717 aa22.42■■□□□ 1.18
SHKBP1-216ENST00000598201 TCP11L2Q8N4U5 519 aa22.42■■□□□ 1.18
SHKBP1-216ENST00000598201 NALCNQ8IZF0 1738 aa22.41■■□□□ 1.18
SHKBP1-216ENST00000598201 RRP7AQ9Y3A4 280 aaKnown RBP22.41■■□□□ 1.18
SHKBP1-216ENST00000598201 AKAP12Q02952 1782 aa22.4■■□□□ 1.18
SHKBP1-216ENST00000598201 PNPLA6Q8IY17 1366 aa22.4■■□□□ 1.18
SHKBP1-216ENST00000598201 WWC1Q8IX03 1113 aa22.4■■□□□ 1.18
SHKBP1-216ENST00000598201 ATF3P18847 181 aa22.4■■□□□ 1.18
SHKBP1-216ENST00000598201 TSHZ2Q9NRE2 1034 aa22.4■■□□□ 1.18
SHKBP1-216ENST00000598201 NEUROD2Q15784 382 aa22.39■■□□□ 1.17
SHKBP1-216ENST00000598201 POLKQ9UBT6 870 aa22.39■■□□□ 1.17
SHKBP1-216ENST00000598201 TOPAZ1Q8N9V7 1692 aa22.39■■□□□ 1.17
SHKBP1-216ENST00000598201 CADPS2Q86UW7 1296 aa22.38■■□□□ 1.17
SHKBP1-216ENST00000598201 ITSN1Q15811 1721 aa22.38■■□□□ 1.17
SHKBP1-216ENST00000598201 ZNF692Q9BU19 519 aaPredicted RBP22.38■■□□□ 1.17
SHKBP1-216ENST00000598201 U2SURPO15042 1029 aaKnown RBP22.37■■□□□ 1.17
SHKBP1-216ENST00000598201 PLIN1O60240 522 aa22.37■■□□□ 1.17
SHKBP1-216ENST00000598201 ACEP12821 1306 aa22.37■■□□□ 1.17
SHKBP1-216ENST00000598201 PLEKHG3A1L390 1219 aa22.37■■□□□ 1.17
SHKBP1-216ENST00000598201 PHF23Q9BUL5 403 aaPredicted RBP22.37■■□□□ 1.17
SHKBP1-216ENST00000598201 DCCP43146 1447 aa22.37■■□□□ 1.17
SHKBP1-216ENST00000598201 E9PSI1 815 aa22.36■■□□□ 1.17
SHKBP1-216ENST00000598201 DIAPH1O60610 1272 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-216ENST00000598201 PPM1GO15355 546 aaPredicted RBP22.34■■□□□ 1.17
SHKBP1-216ENST00000598201 EXOC6Q8TAG9 804 aa22.34■■□□□ 1.17
SHKBP1-216ENST00000598201 PLEKHF1Q96S99 279 aa22.34■■□□□ 1.17
SHKBP1-216ENST00000598201 COG3Q96JB2 828 aa22.33■■□□□ 1.17
SHKBP1-216ENST00000598201 EMILIN1Q9Y6C2 1016 aa22.33■■□□□ 1.17
SHKBP1-216ENST00000598201 TOM1O60784 492 aa22.32■■□□□ 1.16
SHKBP1-216ENST00000598201 TTC21BQ7Z4L5 1316 aa22.32■■□□□ 1.16
SHKBP1-216ENST00000598201 MAP2P11137 1827 aaKnown RBP22.32■■□□□ 1.16
SHKBP1-216ENST00000598201 SLAIN2Q9P270 581 aa22.32■■□□□ 1.16
SHKBP1-216ENST00000598201 NRKQ7Z2Y5 1582 aa22.31■■□□□ 1.16
SHKBP1-216ENST00000598201 UBAP1LF5GYI3 381 aa22.31■■□□□ 1.16
SHKBP1-216ENST00000598201 AATKQ6ZMQ8 1374 aa22.31■■□□□ 1.16
SHKBP1-216ENST00000598201 CCDC27Q2M243 656 aa22.3■■□□□ 1.16
SHKBP1-216ENST00000598201 USP6P35125 1406 aa22.3■■□□□ 1.16
SHKBP1-216ENST00000598201 PMFBP1Q8TBY8 1022 aa22.29■■□□□ 1.16
SHKBP1-216ENST00000598201 CCDC136Q96JN2 1154 aa22.29■■□□□ 1.16
SHKBP1-216ENST00000598201 MST1RQ04912 1400 aa22.28■■□□□ 1.16
SHKBP1-216ENST00000598201 FMN2Q9NZ56 1722 aa22.28■■□□□ 1.16
SHKBP1-216ENST00000598201 RRS1Q15050 365 aaKnown RBP22.27■■□□□ 1.16
SHKBP1-216ENST00000598201 NCBP3Q53F19 620 aaKnown RBP22.27■■□□□ 1.16
SHKBP1-216ENST00000598201 WDR63Q8IWG1 891 aa22.27■■□□□ 1.16
SHKBP1-216ENST00000598201 C20orf194Q5TEA3 1177 aa22.27■■□□□ 1.16
SHKBP1-216ENST00000598201 RGPD8O14715 1765 aaPredicted RBP22.27■■□□□ 1.16
SHKBP1-216ENST00000598201 SSH2Q76I76 1423 aa22.27■■□□□ 1.15
SHKBP1-216ENST00000598201 C1orf167Q5SNV9 1468 aa22.26■■□□□ 1.15
SHKBP1-216ENST00000598201 CDK12Q9NYV4 1490 aaPredicted RBP22.25■■□□□ 1.15
SHKBP1-216ENST00000598201 TMPOP42166 694 aaKnown RBP22.25■■□□□ 1.15
SHKBP1-216ENST00000598201 OVOS2A0A0J9YW53 1432 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 OVOS2Q6IE36 1432 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 ANKARQ7Z5J8 1434 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 MAPK8IP3Q9UPT6 1336 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 IL13P35225 146 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 PIP4K2BP78356 416 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 ESCO1Q5FWF5 840 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 ORAI2Q96SN7 254 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 CRBNQ96SW2 442 aa22.24■■□□□ 1.15
SHKBP1-216ENST00000598201 FCHSD2O94868 740 aa22.22■■□□□ 1.15
SHKBP1-216ENST00000598201 RSPH6AQ9H0K4 717 aa22.22■■□□□ 1.15
SHKBP1-216ENST00000598201 TRIM35Q9UPQ4 493 aa22.22■■□□□ 1.15
SHKBP1-216ENST00000598201 BCAR3O75815 825 aa22.22■■□□□ 1.15
SHKBP1-216ENST00000598201 NGDNQ8NEJ9 315 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-216ENST00000598201 PRKAR2BP31323 418 aa22.2■■□□□ 1.14
SHKBP1-216ENST00000598201 BRINP3Q76B58 766 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms