RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PLEKHG3A1L390 1219 aa19.7■□□□□ 0.74
TRIM28-211ENST00000597968 CDK19Q9BWU1 502 aa19.7■□□□□ 0.74
TRIM28-211ENST00000597968 BTG4Q9NY30 223 aa19.69■□□□□ 0.74
TRIM28-211ENST00000597968 CCDC9Q9Y3X0 531 aaKnown RBP19.69■□□□□ 0.74
TRIM28-211ENST00000597968 SRCAPQ6ZRS2 3230 aa19.69■□□□□ 0.74
TRIM28-211ENST00000597968 PAK3O75914 559 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-211ENST00000597968 KRT27Q7Z3Y8 459 aa19.68■□□□□ 0.74
TRIM28-211ENST00000597968 BRD4O60885 1362 aaPredicted RBP19.68■□□□□ 0.74
TRIM28-211ENST00000597968 SF3B2Q13435 895 aaKnown RBP19.67■□□□□ 0.74
TRIM28-211ENST00000597968 NRAPQ86VF7 1730 aa19.66■□□□□ 0.74
TRIM28-211ENST00000597968 CRYBG1Q9Y4K1 1723 aa19.65■□□□□ 0.74
TRIM28-211ENST00000597968 NBPF8Q3BBV2 869 aa19.65■□□□□ 0.74
TRIM28-211ENST00000597968 PRDM11Q9NQV5 511 aa19.65■□□□□ 0.74
TRIM28-211ENST00000597968 ACEP12821 1306 aa19.64■□□□□ 0.73
TRIM28-211ENST00000597968 CENPJQ9HC77 1338 aaPredicted RBP19.64■□□□□ 0.73
TRIM28-211ENST00000597968 TOPAZ1Q8N9V7 1692 aa19.64■□□□□ 0.73
TRIM28-211ENST00000597968 SPATA31A5Q5VU36 1347 aa19.63■□□□□ 0.73
TRIM28-211ENST00000597968 SPATA31A7Q8IWB4 1347 aa19.63■□□□□ 0.73
TRIM28-211ENST00000597968 NBPF1Q3BBV0 1214 aa19.63■□□□□ 0.73
TRIM28-211ENST00000597968 PLEKHG5O94827 1062 aa19.62■□□□□ 0.73
TRIM28-211ENST00000597968 BRWD3Q6RI45 1802 aa19.62■□□□□ 0.73
TRIM28-211ENST00000597968 FAM98CQ17RN3 349 aaKnown RBP19.6■□□□□ 0.73
TRIM28-211ENST00000597968 KIAA0232Q92628 1395 aa19.59■□□□□ 0.73
TRIM28-211ENST00000597968 SRPK2P78362 688 aaKnown RBP19.59■□□□□ 0.73
TRIM28-211ENST00000597968 CPDO75976 1380 aa19.58■□□□□ 0.73
TRIM28-211ENST00000597968 A0A0G2JS52 829 aa19.58■□□□□ 0.72
TRIM28-211ENST00000597968 MYT1Q01538 1121 aa19.58■□□□□ 0.72
TRIM28-211ENST00000597968 NLRP13Q86W25 1043 aa19.58■□□□□ 0.72
TRIM28-211ENST00000597968 ABTB2Q8N961 1025 aa19.58■□□□□ 0.72
TRIM28-211ENST00000597968 L3MBTL2Q969R5 705 aa19.58■□□□□ 0.72
TRIM28-211ENST00000597968 PPIP5K1Q6PFW1 1433 aa19.58■□□□□ 0.72
TRIM28-211ENST00000597968 PHRF1Q9P1Y6 1649 aaKnown RBP19.58■□□□□ 0.72
TRIM28-211ENST00000597968 USP19O94966 1318 aa19.57■□□□□ 0.72
TRIM28-211ENST00000597968 SPATA31A1Q5TZJ5 1347 aa19.57■□□□□ 0.72
TRIM28-211ENST00000597968 BAG6P46379 1132 aa19.57■□□□□ 0.72
TRIM28-211ENST00000597968 THSD7AQ9UPZ6 1657 aa19.56■□□□□ 0.72
TRIM28-211ENST00000597968 BARGINQ6ZT62 677 aa19.54■□□□□ 0.72
TRIM28-211ENST00000597968 EVC2Q86UK5 1308 aa19.53■□□□□ 0.72
TRIM28-211ENST00000597968 ZC3H6P61129 1189 aaKnown RBP19.53■□□□□ 0.72
TRIM28-211ENST00000597968 DEFB132Q7Z7B7 95 aa19.53■□□□□ 0.72
TRIM28-211ENST00000597968 DISP2A7MBM2 1401 aa19.52■□□□□ 0.72
TRIM28-211ENST00000597968 CABP2Q9NPB3 220 aa19.52■□□□□ 0.72
TRIM28-211ENST00000597968 THRAP3Q9Y2W1 955 aaKnown RBP19.52■□□□□ 0.72
TRIM28-211ENST00000597968 NRKQ7Z2Y5 1582 aa19.52■□□□□ 0.71
TRIM28-211ENST00000597968 QRICH2Q9H0J4 1663 aa19.52■□□□□ 0.71
TRIM28-211ENST00000597968 C11orf95C9JLR9 678 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-211ENST00000597968 GCP02774 474 aa19.51■□□□□ 0.71
TRIM28-211ENST00000597968 EVA1CP58658 441 aa19.51■□□□□ 0.71
TRIM28-211ENST00000597968 ZNF692Q9BU19 519 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-211ENST00000597968 TRPM1Q7Z4N2 1603 aa19.51■□□□□ 0.71
TRIM28-211ENST00000597968 USP6P35125 1406 aa19.51■□□□□ 0.71
TRIM28-211ENST00000597968 SSH2Q76I76 1423 aa19.51■□□□□ 0.71
TRIM28-211ENST00000597968 ROCK2O75116 1388 aaKnown RBP19.5■□□□□ 0.71
TRIM28-211ENST00000597968 CHRNA2Q15822 529 aa19.5■□□□□ 0.71
TRIM28-211ENST00000597968 FAM196AQ6ZSG2 479 aa19.5■□□□□ 0.71
TRIM28-211ENST00000597968 CABP1Q9NZU7 370 aa19.5■□□□□ 0.71
TRIM28-211ENST00000597968 RGPD1P0DJD0 1748 aa19.49■□□□□ 0.71
TRIM28-211ENST00000597968 NUTM2GQ5VZR2 741 aa19.49■□□□□ 0.71
TRIM28-211ENST00000597968 STRN4Q9NRL3 753 aa19.49■□□□□ 0.71
TRIM28-211ENST00000597968 LMO7Q8WWI1 1683 aa19.48■□□□□ 0.71
TRIM28-211ENST00000597968 SBNO2Q9Y2G9 1366 aa19.47■□□□□ 0.71
TRIM28-211ENST00000597968 CAMTA1Q9Y6Y1 1673 aa19.47■□□□□ 0.71
TRIM28-211ENST00000597968 TCP11L2Q8N4U5 519 aa19.47■□□□□ 0.71
TRIM28-211ENST00000597968 SIN3AQ96ST3 1273 aa19.47■□□□□ 0.71
TRIM28-211ENST00000597968 PARD3Q8TEW0 1356 aa19.46■□□□□ 0.71
TRIM28-211ENST00000597968 AATKQ6ZMQ8 1374 aa19.45■□□□□ 0.7
TRIM28-211ENST00000597968 NLRP6P59044 892 aa19.45■□□□□ 0.7
TRIM28-211ENST00000597968 SLIT3O75094 1523 aa19.45■□□□□ 0.7
TRIM28-211ENST00000597968 PDE3BQ13370 1112 aa19.44■□□□□ 0.7
TRIM28-211ENST00000597968 TTC21AQ8NDW8 1320 aa19.44■□□□□ 0.7
TRIM28-211ENST00000597968 COL5A2P05997 1499 aaPredicted RBP19.43■□□□□ 0.7
TRIM28-211ENST00000597968 NEUROD1Q13562 356 aa19.43■□□□□ 0.7
TRIM28-211ENST00000597968 LARP1Q6PKG0 1096 aaKnown RBP19.43■□□□□ 0.7
TRIM28-211ENST00000597968 KCNH5Q8NCM2 988 aa19.43■□□□□ 0.7
TRIM28-211ENST00000597968 CRB1P82279 1406 aa19.42■□□□□ 0.7
TRIM28-211ENST00000597968 EN1Q05925 392 aaPredicted RBP19.41■□□□□ 0.7
TRIM28-211ENST00000597968 USP35Q9P2H5 1018 aa19.41■□□□□ 0.7
TRIM28-211ENST00000597968 LRP5O75197 1615 aa19.4■□□□□ 0.7
TRIM28-211ENST00000597968 CPSF1Q10570 1443 aaKnown RBP19.4■□□□□ 0.7
TRIM28-211ENST00000597968 FAM182BQ5T319 152 aa19.39■□□□□ 0.69
TRIM28-211ENST00000597968 CDCA7Q9BWT1 371 aaPredicted RBP19.39■□□□□ 0.69
TRIM28-211ENST00000597968 TTC21BQ7Z4L5 1316 aa19.39■□□□□ 0.69
TRIM28-211ENST00000597968 TNS1Q9HBL0 1735 aaKnown RBP19.39■□□□□ 0.69
TRIM28-211ENST00000597968 SLC24A1O60721 1099 aa19.38■□□□□ 0.69
TRIM28-211ENST00000597968 PUS7Q96PZ0 661 aaKnown RBP19.38■□□□□ 0.69
TRIM28-211ENST00000597968 CAMKK2Q96RR4 588 aa19.38■□□□□ 0.69
TRIM28-211ENST00000597968 PARP4Q9UKK3 1724 aaKnown RBP19.37■□□□□ 0.69
TRIM28-211ENST00000597968 TRIM37O94972 964 aa19.37■□□□□ 0.69
TRIM28-211ENST00000597968 PIK3C2AO00443 1686 aa19.36■□□□□ 0.69
TRIM28-211ENST00000597968 ABCC6O95255 1503 aa19.36■□□□□ 0.69
TRIM28-211ENST00000597968 ARHGEF25Q86VW2 580 aa19.36■□□□□ 0.69
TRIM28-211ENST00000597968 WDR17Q8IZU2 1322 aa19.35■□□□□ 0.69
TRIM28-211ENST00000597968 APBA3O96018 575 aa19.35■□□□□ 0.69
TRIM28-211ENST00000597968 CARD11Q9BXL7 1154 aa19.35■□□□□ 0.69
TRIM28-211ENST00000597968 AKAP12Q02952 1782 aa19.34■□□□□ 0.69
TRIM28-211ENST00000597968 KTN1Q86UP2 1357 aaKnown RBP19.34■□□□□ 0.69
TRIM28-211ENST00000597968 TONSLQ96HA7 1378 aa19.34■□□□□ 0.69
TRIM28-211ENST00000597968 EZH2Q15910 746 aaKnown RBP19.34■□□□□ 0.69
TRIM28-211ENST00000597968 OVOS2A0A0G2JMS6 1433 aa19.34■□□□□ 0.69
TRIM28-211ENST00000597968 OVOS2A0A0J9YW53 1432 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms