RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 HDGFL2Q7Z4V5 671 aaPredicted RBP19.12■□□□□ 0.65
UPF1-204ENST00000596842 AAMPQ13685 434 aa19.11■□□□□ 0.65
UPF1-204ENST00000596842 ZNF518AQ6AHZ1 1483 aa19.11■□□□□ 0.65
UPF1-204ENST00000596842 NPATQ14207 1427 aa19.11■□□□□ 0.65
UPF1-204ENST00000596842 RBM42Q9BTD8 480 aaKnown RBP19.11■□□□□ 0.65
UPF1-204ENST00000596842 ANKRD36BQ8N2N9 1353 aa19.1■□□□□ 0.65
UPF1-204ENST00000596842 CHD1LQ86WJ1 897 aa19.09■□□□□ 0.65
UPF1-204ENST00000596842 MLECQ14165 292 aa19.09■□□□□ 0.65
UPF1-204ENST00000596842 TSPYL6Q8N831 410 aa19.09■□□□□ 0.65
UPF1-204ENST00000596842 MYOM2P54296 1465 aa19.09■□□□□ 0.65
UPF1-204ENST00000596842 NLRP1Q9C000 1473 aa19.09■□□□□ 0.65
UPF1-204ENST00000596842 KIF1BO60333 1816 aa19.08■□□□□ 0.65
UPF1-204ENST00000596842 NCLP19338 710 aaKnown RBP19.08■□□□□ 0.65
UPF1-204ENST00000596842 ASXL2Q76L83 1435 aa19.08■□□□□ 0.65
UPF1-204ENST00000596842 WAPLQ7Z5K2 1190 aa19.08■□□□□ 0.64
UPF1-204ENST00000596842 CDK19Q9BWU1 502 aa19.08■□□□□ 0.64
UPF1-204ENST00000596842 DCTN1Q14203 1278 aa19.08■□□□□ 0.64
UPF1-204ENST00000596842 ZBTB40Q9NUA8 1239 aa19.08■□□□□ 0.64
UPF1-204ENST00000596842 PHACTR3Q96KR7 559 aa19.07■□□□□ 0.64
UPF1-204ENST00000596842 PLEKHF1Q96S99 279 aa19.07■□□□□ 0.64
UPF1-204ENST00000596842 KIF16BQ96L93 1317 aa19.07■□□□□ 0.64
UPF1-204ENST00000596842 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
UPF1-204ENST00000596842 SBNO2Q9Y2G9 1366 aa19.07■□□□□ 0.64
UPF1-204ENST00000596842 NUTM2FA1L443 756 aa19.07■□□□□ 0.64
UPF1-204ENST00000596842 FBXO31Q5XUX0 539 aaPredicted RBP19.07■□□□□ 0.64
UPF1-204ENST00000596842 HDAC1Q13547 482 aaPredicted RBP19.06■□□□□ 0.64
UPF1-204ENST00000596842 EMILIN1Q9Y6C2 1016 aa19.05■□□□□ 0.64
UPF1-204ENST00000596842 CD109Q6YHK3 1445 aa19.05■□□□□ 0.64
UPF1-204ENST00000596842 SMC5Q8IY18 1101 aa19.05■□□□□ 0.64
UPF1-204ENST00000596842 FAM83GA6ND36 823 aa19.05■□□□□ 0.64
UPF1-204ENST00000596842 MROH2AA6NES4 1674 aa19.05■□□□□ 0.64
UPF1-204ENST00000596842 ZRANB1Q9UGI0 708 aa19.04■□□□□ 0.64
UPF1-204ENST00000596842 ATAD2Q6PL18 1390 aa19.03■□□□□ 0.64
UPF1-204ENST00000596842 TNPO1Q92973 898 aaKnown RBP19.03■□□□□ 0.64
UPF1-204ENST00000596842 TRIM44Q96DX7 344 aaPredicted RBP19.03■□□□□ 0.64
UPF1-204ENST00000596842 RRS1Q15050 365 aaKnown RBP19.03■□□□□ 0.64
UPF1-204ENST00000596842 IQSEC2Q5JU85 1478 aa19.03■□□□□ 0.64
UPF1-204ENST00000596842 CD2BP2O95400 341 aaKnown RBP19.02■□□□□ 0.64
UPF1-204ENST00000596842 NUCB1Q02818 461 aa19.02■□□□□ 0.64
UPF1-204ENST00000596842 EFCAB6Q5THR3 1501 aa19.02■□□□□ 0.64
UPF1-204ENST00000596842 RPGRIP1LQ68CZ1 1315 aa19.01■□□□□ 0.63
UPF1-204ENST00000596842 CT47B1P0C2W7 299 aaPredicted RBP19.01■□□□□ 0.63
UPF1-204ENST00000596842 PPRC1Q5VV67 1664 aaKnown RBP19.01■□□□□ 0.63
UPF1-204ENST00000596842 FOXD4L5Q5VV16 416 aaPredicted RBP19.01■□□□□ 0.63
UPF1-204ENST00000596842 FOXD4L4Q8WXT5 416 aaPredicted RBP19.01■□□□□ 0.63
UPF1-204ENST00000596842 DDX11L8A8MPP1 907 aa19■□□□□ 0.63
UPF1-204ENST00000596842 QRICH2Q9H0J4 1663 aa19■□□□□ 0.63
UPF1-204ENST00000596842 TPRNQ4KMQ1 711 aa19■□□□□ 0.63
UPF1-204ENST00000596842 GRPEL1Q9HAV7 217 aa19■□□□□ 0.63
UPF1-204ENST00000596842 NCKAP5LQ9HCH0 1330 aa19■□□□□ 0.63
UPF1-204ENST00000596842 ZBTB7CA1YPR0 619 aa18.99■□□□□ 0.63
UPF1-204ENST00000596842 TBC1D9Q6ZT07 1266 aa18.99■□□□□ 0.63
UPF1-204ENST00000596842 SHPRHQ149N8 1683 aa18.99■□□□□ 0.63
UPF1-204ENST00000596842 GBP4Q96PP9 640 aa18.99■□□□□ 0.63
UPF1-204ENST00000596842 TWISTNBQ3B726 338 aaPredicted RBP18.99■□□□□ 0.63
UPF1-204ENST00000596842 NME9Q86XW9 330 aa18.98■□□□□ 0.63
UPF1-204ENST00000596842 UHRF1BP1LA0JNW5 1464 aa18.98■□□□□ 0.63
UPF1-204ENST00000596842 KRT24Q2M2I5 525 aa18.98■□□□□ 0.63
UPF1-204ENST00000596842 C16orf71Q8IYS4 520 aaPredicted RBP18.98■□□□□ 0.63
UPF1-204ENST00000596842 PLPPR3Q6T4P5 718 aa18.97■□□□□ 0.63
UPF1-204ENST00000596842 POLKQ9UBT6 870 aa18.97■□□□□ 0.63
UPF1-204ENST00000596842 SSFA2P28290 1259 aa18.97■□□□□ 0.63
UPF1-204ENST00000596842 FCHSD2O94868 740 aa18.96■□□□□ 0.63
UPF1-204ENST00000596842 MBIPQ9NS73 344 aa18.96■□□□□ 0.63
UPF1-204ENST00000596842 MRE11P49959 708 aa18.96■□□□□ 0.63
UPF1-204ENST00000596842 C8orf58Q8NAV2 365 aa18.96■□□□□ 0.63
UPF1-204ENST00000596842 DEPDC5O75140 1603 aa18.96■□□□□ 0.63
UPF1-204ENST00000596842 NSD2O96028 1365 aa18.96■□□□□ 0.63
UPF1-204ENST00000596842 INO80Q9ULG1 1556 aaPredicted RBP18.96■□□□□ 0.63
UPF1-204ENST00000596842 VAMP4O75379 141 aa18.95■□□□□ 0.62
UPF1-204ENST00000596842 MROH1Q8NDA8 1641 aa18.95■□□□□ 0.62
UPF1-204ENST00000596842 ZBTB7BO15156 539 aaPredicted RBP18.95■□□□□ 0.62
UPF1-204ENST00000596842 KIAA1210Q9ULL0 1709 aa18.95■□□□□ 0.62
UPF1-204ENST00000596842 ABCC11Q96J66 1382 aa18.95■□□□□ 0.62
UPF1-204ENST00000596842 SMARCA5O60264 1052 aaPredicted RBP18.95■□□□□ 0.62
UPF1-204ENST00000596842 DDX49Q9Y6V7 483 aaKnown RBP18.95■□□□□ 0.62
UPF1-204ENST00000596842 TULP4Q9NRJ4 1543 aa18.95■□□□□ 0.62
UPF1-204ENST00000596842 NOL8Q76FK4 1167 aaKnown RBP18.94■□□□□ 0.62
UPF1-204ENST00000596842 NFE2L2Q16236 605 aa18.94■□□□□ 0.62
UPF1-204ENST00000596842 SLC4A10Q6U841 1118 aa18.94■□□□□ 0.62
UPF1-204ENST00000596842 VWDEQ8N2E2 1590 aa18.93■□□□□ 0.62
UPF1-204ENST00000596842 GAS2L2Q8NHY3 880 aa18.93■□□□□ 0.62
UPF1-204ENST00000596842 GAS2L3Q86XJ1 694 aa18.93■□□□□ 0.62
UPF1-204ENST00000596842 ADGRB3O60242 1522 aa18.93■□□□□ 0.62
UPF1-204ENST00000596842 GOLGA6L22H0YM25 854 aa18.93■□□□□ 0.62
UPF1-204ENST00000596842 BMP2KLQ5H9B9 411 aa18.93■□□□□ 0.62
UPF1-204ENST00000596842 GNAI1P63096 354 aa18.92■□□□□ 0.62
UPF1-204ENST00000596842 MRPL50Q8N5N7 158 aaKnown RBP18.92■□□□□ 0.62
UPF1-204ENST00000596842 K7ELQ4 463 aaPredicted RBP18.92■□□□□ 0.62
UPF1-204ENST00000596842 ALDH1L2Q3SY69 923 aa18.92■□□□□ 0.62
UPF1-204ENST00000596842 MIS18AQ9NYP9 233 aa18.92■□□□□ 0.62
UPF1-204ENST00000596842 ADGRB1O14514 1584 aa18.92■□□□□ 0.62
UPF1-204ENST00000596842 TXNDC2Q86VQ3 553 aa18.92■□□□□ 0.62
UPF1-204ENST00000596842 OTUD7AQ8TE49 926 aaPredicted RBP18.92■□□□□ 0.62
UPF1-204ENST00000596842 MCTP1Q6DN14 999 aa18.91■□□□□ 0.62
UPF1-204ENST00000596842 SIRT2Q8IXJ6 389 aa18.91■□□□□ 0.62
UPF1-204ENST00000596842 FOXD4L6Q3SYB3 417 aaPredicted RBP18.91■□□□□ 0.62
UPF1-204ENST00000596842 FOXD4L3Q6VB84 417 aaPredicted RBP18.91■□□□□ 0.62
UPF1-204ENST00000596842 NRXN1Q9ULB1 1477 aa18.91■□□□□ 0.62
UPF1-204ENST00000596842 FSD2A1L4K1 749 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms