RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 KRT28Q7Z3Y7 464 aa14.38□□□□□ -0.11
VPS4B-204ENST00000589604 NGDNQ8NEJ9 315 aaKnown RBP14.38□□□□□ -0.11
VPS4B-204ENST00000589604 NPHP3Q7Z494 1330 aa14.38□□□□□ -0.11
VPS4B-204ENST00000589604 ANP32CO43423 234 aa14.37□□□□□ -0.11
VPS4B-204ENST00000589604 TMC1Q8TDI8 760 aa14.37□□□□□ -0.11
VPS4B-204ENST00000589604 NRKQ7Z2Y5 1582 aa14.36□□□□□ -0.11
VPS4B-204ENST00000589604 SSH2Q76I76 1423 aa14.36□□□□□ -0.11
VPS4B-204ENST00000589604 PRKCSHP14314 528 aaPredicted RBP14.36□□□□□ -0.11
VPS4B-204ENST00000589604 PSME1Q06323 249 aa14.36□□□□□ -0.11
VPS4B-204ENST00000589604 PANK3Q9H999 370 aa14.36□□□□□ -0.11
VPS4B-204ENST00000589604 MON2Q7Z3U7 1717 aa14.35□□□□□ -0.11
VPS4B-204ENST00000589604 ALS2Q96Q42 1657 aa14.35□□□□□ -0.11
VPS4B-204ENST00000589604 USP6P35125 1406 aa14.35□□□□□ -0.11
VPS4B-204ENST00000589604 A0A1W2PP64 1363 aa14.35□□□□□ -0.11
VPS4B-204ENST00000589604 CNKSR2Q8WXI2 1034 aa14.35□□□□□ -0.11
VPS4B-204ENST00000589604 PRKRIP1Q9H875 184 aaPredicted RBP14.35□□□□□ -0.11
VPS4B-204ENST00000589604 SPATA31A3Q5VYP0 1347 aa14.33□□□□□ -0.11
VPS4B-204ENST00000589604 PNPLA6Q8IY17 1366 aa14.33□□□□□ -0.12
VPS4B-204ENST00000589604 SHPRHQ149N8 1683 aa14.32□□□□□ -0.12
VPS4B-204ENST00000589604 TNS3Q68CZ2 1445 aa14.32□□□□□ -0.12
VPS4B-204ENST00000589604 SBNO1A3KN83 1393 aa14.32□□□□□ -0.12
VPS4B-204ENST00000589604 KTN1Q86UP2 1357 aaKnown RBP14.32□□□□□ -0.12
VPS4B-204ENST00000589604 CCER2I3L3R5 266 aa14.32□□□□□ -0.12
VPS4B-204ENST00000589604 CARD14Q9BXL6 1004 aa14.32□□□□□ -0.12
VPS4B-204ENST00000589604 ANKRD36BQ8N2N9 1353 aa14.31□□□□□ -0.12
VPS4B-204ENST00000589604 NINLQ9Y2I6 1382 aa14.31□□□□□ -0.12
VPS4B-204ENST00000589604 PIK3C2AO00443 1686 aa14.31□□□□□ -0.12
VPS4B-204ENST00000589604 LRRC59Q96AG4 307 aaKnown RBP14.31□□□□□ -0.12
VPS4B-204ENST00000589604 COL22A1Q8NFW1 1626 aaPredicted RBP14.3□□□□□ -0.12
VPS4B-204ENST00000589604 ILDR2Q71H61 639 aa14.3□□□□□ -0.12
VPS4B-204ENST00000589604 MARF1Q9Y4F3 1742 aaKnown RBP14.3□□□□□ -0.12
VPS4B-204ENST00000589604 JCADQ9P266 1359 aa14.3□□□□□ -0.12
VPS4B-204ENST00000589604 TTC21BQ7Z4L5 1316 aa14.3□□□□□ -0.12
VPS4B-204ENST00000589604 CRYBG1Q9Y4K1 1723 aa14.3□□□□□ -0.12
VPS4B-204ENST00000589604 SOCS7O14512 581 aa14.3□□□□□ -0.12
VPS4B-204ENST00000589604 PAK3O75914 559 aaPredicted RBP14.3□□□□□ -0.12
VPS4B-204ENST00000589604 PLCB2Q00722 1185 aa14.3□□□□□ -0.12
VPS4B-204ENST00000589604 MED1Q15648 1581 aaPredicted RBP14.29□□□□□ -0.12
VPS4B-204ENST00000589604 NUTM2GQ5VZR2 741 aa14.29□□□□□ -0.12
VPS4B-204ENST00000589604 ZNF692Q9BU19 519 aaPredicted RBP14.29□□□□□ -0.12
VPS4B-204ENST00000589604 ZRANB1Q9UGI0 708 aa14.29□□□□□ -0.12
VPS4B-204ENST00000589604 LRP6O75581 1613 aa14.29□□□□□ -0.12
VPS4B-204ENST00000589604 ABCA3Q99758 1704 aa14.29□□□□□ -0.12
VPS4B-204ENST00000589604 LMOD2Q6P5Q4 547 aa14.28□□□□□ -0.12
VPS4B-204ENST00000589604 HDGFL2Q7Z4V5 671 aaPredicted RBP14.28□□□□□ -0.12
VPS4B-204ENST00000589604 CABLES1Q8TDN4 633 aa14.28□□□□□ -0.12
VPS4B-204ENST00000589604 TERF2IPQ9NYB0 399 aa14.28□□□□□ -0.12
VPS4B-204ENST00000589604 EDC4Q6P2E9 1401 aaKnown RBP14.28□□□□□ -0.12
VPS4B-204ENST00000589604 PLEKHG5O94827 1062 aa14.27□□□□□ -0.12
VPS4B-204ENST00000589604 CCDC184Q52MB2 194 aa14.27□□□□□ -0.12
VPS4B-204ENST00000589604 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.27□□□□□ -0.12
VPS4B-204ENST00000589604 PARD3Q8TEW0 1356 aa14.26□□□□□ -0.13
VPS4B-204ENST00000589604 NME9Q86XW9 330 aa14.26□□□□□ -0.13
VPS4B-204ENST00000589604 NSD3Q9BZ95 1437 aa14.25□□□□□ -0.13
VPS4B-204ENST00000589604 ARHGEF10O15013 1369 aa14.25□□□□□ -0.13
VPS4B-204ENST00000589604 BRD4O60885 1362 aaPredicted RBP14.25□□□□□ -0.13
VPS4B-204ENST00000589604 NPC1L1Q9UHC9 1359 aa14.25□□□□□ -0.13
VPS4B-204ENST00000589604 ABTB2Q8N961 1025 aa14.25□□□□□ -0.13
VPS4B-204ENST00000589604 PHRF1Q9P1Y6 1649 aaKnown RBP14.24□□□□□ -0.13
VPS4B-204ENST00000589604 NUTM2BA6NNL0 878 aaPredicted RBP14.23□□□□□ -0.13
VPS4B-204ENST00000589604 NUTM2EB1AL46 878 aaPredicted RBP14.23□□□□□ -0.13
VPS4B-204ENST00000589604 RALBP1Q15311 655 aa14.23□□□□□ -0.13
VPS4B-204ENST00000589604 NUTM2AQ8IVF1 878 aaPredicted RBP14.23□□□□□ -0.13
VPS4B-204ENST00000589604 KNSTRNQ9Y448 316 aa14.23□□□□□ -0.13
VPS4B-204ENST00000589604 TTC21AQ8NDW8 1320 aa14.23□□□□□ -0.13
VPS4B-204ENST00000589604 USP54Q70EL1 1684 aa14.23□□□□□ -0.13
VPS4B-204ENST00000589604 CNGB1Q14028 1251 aaPredicted RBP14.23□□□□□ -0.13
VPS4B-204ENST00000589604 USP19O94966 1318 aa14.22□□□□□ -0.13
VPS4B-204ENST00000589604 KIF20BQ96Q89 1820 aa14.22□□□□□ -0.13
VPS4B-204ENST00000589604 FYB1O15117 783 aa14.22□□□□□ -0.13
VPS4B-204ENST00000589604 SLIT3O75094 1523 aa14.22□□□□□ -0.13
VPS4B-204ENST00000589604 SPATA31A6Q5VVP1 1343 aa14.22□□□□□ -0.13
VPS4B-204ENST00000589604 OVOS2A0A0J9YW53 1432 aa14.21□□□□□ -0.13
VPS4B-204ENST00000589604 OVOS2Q6IE36 1432 aa14.21□□□□□ -0.13
VPS4B-204ENST00000589604 NLRP6P59044 892 aa14.21□□□□□ -0.13
VPS4B-204ENST00000589604 CC2D1BQ5T0F9 858 aaKnown RBP14.21□□□□□ -0.13
VPS4B-204ENST00000589604 TAOK2Q9UL54 1235 aa14.21□□□□□ -0.13
VPS4B-204ENST00000589604 USP31Q70CQ4 1352 aa14.21□□□□□ -0.13
VPS4B-204ENST00000589604 PIAS4Q8N2W9 510 aaPredicted RBP14.2□□□□□ -0.14
VPS4B-204ENST00000589604 GGNBP2Q9H3C7 697 aa14.2□□□□□ -0.14
VPS4B-204ENST00000589604 MYBBP1AQ9BQG0 1328 aaKnown RBP14.2□□□□□ -0.14
VPS4B-204ENST00000589604 ADAMTS2O95450 1211 aa14.19□□□□□ -0.14
VPS4B-204ENST00000589604 FBLN1P23142 703 aa14.19□□□□□ -0.14
VPS4B-204ENST00000589604 NLRP13Q86W25 1043 aa14.19□□□□□ -0.14
VPS4B-204ENST00000589604 NFAT5O94916 1531 aa14.19□□□□□ -0.14
VPS4B-204ENST00000589604 GCP02774 474 aa14.17□□□□□ -0.14
VPS4B-204ENST00000589604 ANKRD26Q9UPS8 1709 aa14.17□□□□□ -0.14
VPS4B-204ENST00000589604 SOX12O15370 315 aa14.17□□□□□ -0.14
VPS4B-204ENST00000589604 ZC3H6P61129 1189 aaKnown RBP14.17□□□□□ -0.14
VPS4B-204ENST00000589604 CGNL1Q0VF96 1302 aa14.16□□□□□ -0.14
VPS4B-204ENST00000589604 YTHDC1Q96MU7 727 aaKnown RBP14.16□□□□□ -0.14
VPS4B-204ENST00000589604 KIAA0232Q92628 1395 aa14.15□□□□□ -0.14
VPS4B-204ENST00000589604 MRS2Q9HD23 443 aa14.15□□□□□ -0.14
VPS4B-204ENST00000589604 FAM83GA6ND36 823 aa14.14□□□□□ -0.15
VPS4B-204ENST00000589604 PPP2R1AP30153 589 aa14.14□□□□□ -0.15
VPS4B-204ENST00000589604 HAP1P54257 671 aaPredicted RBP14.14□□□□□ -0.15
VPS4B-204ENST00000589604 CHRNA2Q15822 529 aa14.14□□□□□ -0.15
VPS4B-204ENST00000589604 COG3Q96JB2 828 aa14.14□□□□□ -0.15
VPS4B-204ENST00000589604 C8orf37Q96NL8 207 aa14.14□□□□□ -0.15
VPS4B-204ENST00000589604 COL18A1P39060 1754 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms