RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	20.47	■□□□□ 0.87
DDX39A-209	ENST00000589318	ZNF692	Q9BU19	519 aa	Predicted RBP	20.46	■□□□□ 0.87
DDX39A-209	ENST00000589318	ANKAR	Q7Z5J8	1434 aa		20.46	■□□□□ 0.87
DDX39A-209	ENST00000589318	ACE	P12821	1306 aa		20.45	■□□□□ 0.86
DDX39A-209	ENST00000589318	MSH5	O43196	834 aa		20.44	■□□□□ 0.86
DDX39A-209	ENST00000589318	USP6	P35125	1406 aa		20.44	■□□□□ 0.86
DDX39A-209	ENST00000589318	SMG6	Q86US8	1419 aa	Known RBP	20.44	■□□□□ 0.86
DDX39A-209	ENST00000589318	COL3A1	P02461	1466 aa	Predicted RBP	20.44	■□□□□ 0.86
DDX39A-209	ENST00000589318	NME9	Q86XW9	330 aa		20.43	■□□□□ 0.86
DDX39A-209	ENST00000589318	SSH2	Q76I76	1423 aa		20.43	■□□□□ 0.86
DDX39A-209	ENST00000589318	ADGRL3	Q9HAR2	1447 aa		20.43	■□□□□ 0.86
DDX39A-209	ENST00000589318	MAP2	P11137	1827 aa	Known RBP	20.42	■□□□□ 0.86
DDX39A-209	ENST00000589318	LMTK3	Q96Q04	1460 aa		20.42	■□□□□ 0.86
DDX39A-209	ENST00000589318	ERICH6B	Q5W0A0	696 aa		20.41	■□□□□ 0.86
DDX39A-209	ENST00000589318	RBM33	Q96EV2	1170 aa	Known RBP	20.41	■□□□□ 0.86
DDX39A-209	ENST00000589318	ZRANB1	Q9UGI0	708 aa		20.41	■□□□□ 0.86
DDX39A-209	ENST00000589318	STRCP1	A6NGW2	1772 aa		20.4	■□□□□ 0.86
DDX39A-209	ENST00000589318	TTC21B	Q7Z4L5	1316 aa		20.4	■□□□□ 0.86
DDX39A-209	ENST00000589318	HSPA2	P54652	639 aa		20.39	■□□□□ 0.85
DDX39A-209	ENST00000589318	CFAP53	Q96M91	514 aa		20.39	■□□□□ 0.85
DDX39A-209	ENST00000589318	SALL2	Q9Y467	1007 aa	Predicted RBP	20.39	■□□□□ 0.85
DDX39A-209	ENST00000589318	PNPLA6	Q8IY17	1366 aa		20.38	■□□□□ 0.85
DDX39A-209	ENST00000589318	PMFBP1	Q8TBY8	1022 aa		20.38	■□□□□ 0.85
DDX39A-209	ENST00000589318	NUDC	Q9Y266	331 aa		20.38	■□□□□ 0.85
DDX39A-209	ENST00000589318	OVOS2	A0A0J9YW53	1432 aa		20.37	■□□□□ 0.85
DDX39A-209	ENST00000589318	OVOS2	Q6IE36	1432 aa		20.37	■□□□□ 0.85
DDX39A-209	ENST00000589318	STRC	Q7RTU9	1775 aa		20.37	■□□□□ 0.85
DDX39A-209	ENST00000589318	CCDC146	Q8IYE0	955 aa		20.37	■□□□□ 0.85
DDX39A-209	ENST00000589318	FBLN1	P23142	703 aa		20.36	■□□□□ 0.85
DDX39A-209	ENST00000589318	AATK	Q6ZMQ8	1374 aa		20.36	■□□□□ 0.85
DDX39A-209	ENST00000589318	POLK	Q9UBT6	870 aa		20.35	■□□□□ 0.85
DDX39A-209	ENST00000589318	PDE3B	Q13370	1112 aa		20.35	■□□□□ 0.85
DDX39A-209	ENST00000589318	ZNF521	Q96K83	1311 aa		20.34	■□□□□ 0.85
DDX39A-209	ENST00000589318	COG3	Q96JB2	828 aa		20.34	■□□□□ 0.85
DDX39A-209	ENST00000589318	PIK3C2A	O00443	1686 aa		20.33	■□□□□ 0.85
DDX39A-209	ENST00000589318	IQSEC2	Q5JU85	1478 aa		20.32	■□□□□ 0.84
DDX39A-209	ENST00000589318	NGDN	Q8NEJ9	315 aa	Known RBP	20.32	■□□□□ 0.84
DDX39A-209	ENST00000589318	APAF1	O14727	1248 aa		20.31	■□□□□ 0.84
DDX39A-209	ENST00000589318	TTC21A	Q8NDW8	1320 aa		20.31	■□□□□ 0.84
DDX39A-209	ENST00000589318	CDK12	Q9NYV4	1490 aa	Predicted RBP	20.31	■□□□□ 0.84
DDX39A-209	ENST00000589318	CDCA7L	Q96GN5	454 aa		20.31	■□□□□ 0.84
DDX39A-209	ENST00000589318	MARF1	Q9Y4F3	1742 aa	Known RBP	20.31	■□□□□ 0.84
DDX39A-209	ENST00000589318	USP54	Q70EL1	1684 aa		20.3	■□□□□ 0.84
DDX39A-209	ENST00000589318	PROSER2	Q86WR7	435 aa	Predicted RBP	20.29	■□□□□ 0.84
DDX39A-209	ENST00000589318	EMILIN1	Q9Y6C2	1016 aa		20.29	■□□□□ 0.84
DDX39A-209	ENST00000589318	USP31	Q70CQ4	1352 aa		20.29	■□□□□ 0.84
DDX39A-209	ENST00000589318	RUNDC1	Q96C34	613 aa		20.28	■□□□□ 0.84
DDX39A-209	ENST00000589318	PHF8	Q9UPP1	1060 aa		20.27	■□□□□ 0.84
DDX39A-209	ENST00000589318	DIAPH1	O60610	1272 aa	Known RBP	20.27	■□□□□ 0.84
DDX39A-209	ENST00000589318	U2AF1L5	P0DN76	240 aa	Predicted RBP	20.27	■□□□□ 0.84
DDX39A-209	ENST00000589318	U2AF1	Q01081	240 aa	Known RBP eCLIP	20.27	■□□□□ 0.84	2e-6	■□□□□ 10.7
DDX39A-209	ENST00000589318	C14orf37	Q86TY3	774 aa		20.26	■□□□□ 0.83
DDX39A-209	ENST00000589318	RRS1	Q15050	365 aa	Known RBP	20.25	■□□□□ 0.83
DDX39A-209	ENST00000589318	NGEF	Q8N5V2	710 aa		20.25	■□□□□ 0.83
DDX39A-209	ENST00000589318	PEAK1	Q9H792	1746 aa		20.25	■□□□□ 0.83
DDX39A-209	ENST00000589318	DEK	P35659	375 aa	Known RBP	20.25	■□□□□ 0.83
DDX39A-209	ENST00000589318	TMEM94	Q12767	1356 aa		20.24	■□□□□ 0.83
DDX39A-209	ENST00000589318	PPM1G	O15355	546 aa	Predicted RBP	20.24	■□□□□ 0.83
DDX39A-209	ENST00000589318	XIRP1	Q702N8	1843 aa	Known RBP	20.24	■□□□□ 0.83
DDX39A-209	ENST00000589318	NCOA3	Q9Y6Q9	1424 aa		20.24	■□□□□ 0.83
DDX39A-209	ENST00000589318	RNF123	Q5XPI4	1314 aa		20.24	■□□□□ 0.83
DDX39A-209	ENST00000589318	PLEKHF1	Q96S99	279 aa		20.23	■□□□□ 0.83
DDX39A-209	ENST00000589318	C19orf44	Q9H6X5	657 aa		20.23	■□□□□ 0.83
DDX39A-209	ENST00000589318	LRRC7	Q96NW7	1537 aa		20.23	■□□□□ 0.83
DDX39A-209	ENST00000589318	U2SURP	O15042	1029 aa	Known RBP	20.23	■□□□□ 0.83
DDX39A-209	ENST00000589318	TCP11L2	Q8N4U5	519 aa		20.23	■□□□□ 0.83
DDX39A-209	ENST00000589318	ESCO1	Q5FWF5	840 aa		20.21	■□□□□ 0.83
DDX39A-209	ENST00000589318	PHF23	Q9BUL5	403 aa	Predicted RBP	20.21	■□□□□ 0.83
DDX39A-209	ENST00000589318	C1orf167	Q5SNV9	1468 aa		20.21	■□□□□ 0.83
DDX39A-209	ENST00000589318	DCC	P43146	1447 aa		20.21	■□□□□ 0.83
DDX39A-209	ENST00000589318	IL13	P35225	146 aa		20.21	■□□□□ 0.83
DDX39A-209	ENST00000589318	GOLGA2	Q08379	1002 aa		20.2	■□□□□ 0.82
DDX39A-209	ENST00000589318	ORAI2	Q96SN7	254 aa		20.2	■□□□□ 0.82
DDX39A-209	ENST00000589318	KIF1A	Q12756	1690 aa		20.2	■□□□□ 0.82
DDX39A-209	ENST00000589318	DUSP27	Q5VZP5	1158 aa		20.19	■□□□□ 0.82
DDX39A-209	ENST00000589318	DMRT2	Q9Y5R5	561 aa		20.19	■□□□□ 0.82
DDX39A-209	ENST00000589318	WWC1	Q8IX03	1113 aa		20.19	■□□□□ 0.82
DDX39A-209	ENST00000589318	TRMT2A	Q8IZ69	625 aa	Known RBP	20.19	■□□□□ 0.82
DDX39A-209	ENST00000589318	SPINK5	Q9NQ38	1064 aa	Predicted RBP	20.19	■□□□□ 0.82
DDX39A-209	ENST00000589318	MST1R	Q04912	1400 aa		20.18	■□□□□ 0.82
DDX39A-209	ENST00000589318	SLFN5	Q08AF3	891 aa		20.18	■□□□□ 0.82
DDX39A-209	ENST00000589318	NCBP3	Q53F19	620 aa	Known RBP	20.18	■□□□□ 0.82
DDX39A-209	ENST00000589318	RRP7A	Q9Y3A4	280 aa	Known RBP	20.18	■□□□□ 0.82
DDX39A-209	ENST00000589318	TRPM3	Q9HCF6	1732 aa	Predicted RBP	20.17	■□□□□ 0.82
DDX39A-209	ENST00000589318	NLRP6	P59044	892 aa		20.17	■□□□□ 0.82
DDX39A-209	ENST00000589318	IRX6	P78412	446 aa	Predicted RBP	20.17	■□□□□ 0.82
DDX39A-209	ENST00000589318	CCDC27	Q2M243	656 aa		20.16	■□□□□ 0.82
DDX39A-209	ENST00000589318	RSPH6A	Q9H0K4	717 aa		20.16	■□□□□ 0.82
DDX39A-209	ENST00000589318	RGPD1	P0DJD0	1748 aa		20.16	■□□□□ 0.82
DDX39A-209	ENST00000589318	FCHSD2	O94868	740 aa		20.15	■□□□□ 0.82
DDX39A-209	ENST00000589318	MAP3K19	Q56UN5	1328 aa		20.15	■□□□□ 0.82
DDX39A-209	ENST00000589318	ABTB2	Q8N961	1025 aa		20.15	■□□□□ 0.82
DDX39A-209	ENST00000589318	RCAN3	Q9UKA8	241 aa		20.15	■□□□□ 0.82
DDX39A-209	ENST00000589318	PAK3	O75914	559 aa	Predicted RBP	20.14	■□□□□ 0.81
DDX39A-209	ENST00000589318	NEUROD2	Q15784	382 aa		20.14	■□□□□ 0.81
DDX39A-209	ENST00000589318	SOX12	O15370	315 aa		20.14	■□□□□ 0.81
DDX39A-209	ENST00000589318	PSME1	Q06323	249 aa		20.14	■□□□□ 0.81
DDX39A-209	ENST00000589318	NUTM2G	Q5VZR2	741 aa		20.14	■□□□□ 0.81
DDX39A-209	ENST00000589318	FOXO3	O43524	673 aa		20.13	■□□□□ 0.81
DDX39A-209	ENST00000589318	EIF4A2	Q14240	407 aa	Known RBP	20.13	■□□□□ 0.81

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms