RNA–Protein interactions for RNA: ENST00000586134.5

ZNF540-203, Transcript of zinc finger protein 540, humanhuman

TSL 5

Gene ZNF540, Length 2,038 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-203ENST00000586134 PHF23Q9BUL5 403 aaPredicted RBP12.95□□□□□ -0.34
ZNF540-203ENST00000586134 CHMP4BQ9H444 224 aaKnown RBP12.95□□□□□ -0.34
ZNF540-203ENST00000586134 C1orf167Q5SNV9 1468 aa12.95□□□□□ -0.34
ZNF540-203ENST00000586134 DLC1Q96QB1 1528 aa12.93□□□□□ -0.34
ZNF540-203ENST00000586134 RGL3Q3MIN7 710 aa12.93□□□□□ -0.34
ZNF540-203ENST00000586134 C14orf93Q9H972 538 aaKnown RBP12.93□□□□□ -0.34
ZNF540-203ENST00000586134 YTHDC2Q9H6S0 1430 aaKnown RBP12.92□□□□□ -0.34
ZNF540-203ENST00000586134 FTSJ3Q8IY81 847 aaKnown RBP12.92□□□□□ -0.34
ZNF540-203ENST00000586134 FMN2Q9NZ56 1722 aa12.92□□□□□ -0.34
ZNF540-203ENST00000586134 TEX2Q8IWB9 1127 aa12.91□□□□□ -0.34
ZNF540-203ENST00000586134 UTP14CQ5TAP6 766 aaKnown RBP12.91□□□□□ -0.34
ZNF540-203ENST00000586134 CHMP4AQ9BY43 222 aa12.9□□□□□ -0.34
ZNF540-203ENST00000586134 KIF1AQ12756 1690 aa12.9□□□□□ -0.34
ZNF540-203ENST00000586134 ADGRB1O14514 1584 aa12.9□□□□□ -0.35
ZNF540-203ENST00000586134 CHRM1P11229 460 aaPredicted RBP12.89□□□□□ -0.35
ZNF540-203ENST00000586134 DDX10Q13206 875 aaKnown RBP12.89□□□□□ -0.35
ZNF540-203ENST00000586134 LRRC59Q96AG4 307 aaKnown RBP12.89□□□□□ -0.35
ZNF540-203ENST00000586134 RGS17Q9UGC6 210 aaPredicted RBP12.89□□□□□ -0.35
ZNF540-203ENST00000586134 KIAA1210Q9ULL0 1709 aa12.89□□□□□ -0.35
ZNF540-203ENST00000586134 COL22A1Q8NFW1 1626 aaPredicted RBP12.89□□□□□ -0.35
ZNF540-203ENST00000586134 ADGRB2O60241 1585 aa12.89□□□□□ -0.35
ZNF540-203ENST00000586134 LRP6O75581 1613 aa12.88□□□□□ -0.35
ZNF540-203ENST00000586134 TCERG1O14776 1098 aaKnown RBP12.88□□□□□ -0.35
ZNF540-203ENST00000586134 HNRNPUQ00839 825 aaKnown RBP eCLIP12.88□□□□□ -0.35
ZNF540-203ENST00000586134 BCCIPQ9P287 314 aaKnown RBP eCLIP12.88□□□□□ -0.35
ZNF540-203ENST00000586134 SOS2Q07890 1332 aaPredicted RBP12.87□□□□□ -0.35
ZNF540-203ENST00000586134 MS4A1P11836 297 aa12.86□□□□□ -0.35
ZNF540-203ENST00000586134 PNPLA6Q8IY17 1366 aa12.86□□□□□ -0.35
ZNF540-203ENST00000586134 PXDNQ92626 1479 aa12.84□□□□□ -0.35
ZNF540-203ENST00000586134 NPHP3Q7Z494 1330 aa12.84□□□□□ -0.35
ZNF540-203ENST00000586134 CFAP70Q5T0N1 1121 aa12.84□□□□□ -0.35
ZNF540-203ENST00000586134 TMEM132EQ6IEE7 984 aa12.84□□□□□ -0.35
ZNF540-203ENST00000586134 PLEKHH1Q9ULM0 1364 aa12.83□□□□□ -0.36
ZNF540-203ENST00000586134 ZNF772Q68DY9 489 aaPredicted RBP12.83□□□□□ -0.36
ZNF540-203ENST00000586134 MTERF4Q7Z6M4 381 aaKnown RBP12.83□□□□□ -0.36
ZNF540-203ENST00000586134 MARF1Q9Y4F3 1742 aaKnown RBP12.83□□□□□ -0.36
ZNF540-203ENST00000586134 ANKARQ7Z5J8 1434 aa12.83□□□□□ -0.36
ZNF540-203ENST00000586134 WAPLQ7Z5K2 1190 aa12.83□□□□□ -0.36
ZNF540-203ENST00000586134 ORAI2Q96SN7 254 aa12.83□□□□□ -0.36
ZNF540-203ENST00000586134 STK26Q9P289 416 aa12.83□□□□□ -0.36
ZNF540-203ENST00000586134 RGPD8O14715 1765 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-203ENST00000586134 ARHGEF28Q8N1W1 1705 aaKnown RBP12.82□□□□□ -0.36
ZNF540-203ENST00000586134 TERF1P54274 439 aa12.82□□□□□ -0.36
ZNF540-203ENST00000586134 DHX37Q8IY37 1157 aaKnown RBP12.82□□□□□ -0.36
ZNF540-203ENST00000586134 POTEAQ6S8J7 498 aa12.81□□□□□ -0.36
ZNF540-203ENST00000586134 ZFP91Q96JP5 570 aaPredicted RBP12.81□□□□□ -0.36
ZNF540-203ENST00000586134 CDK12Q9NYV4 1490 aaPredicted RBP12.81□□□□□ -0.36
ZNF540-203ENST00000586134 EIF3AQ14152 1382 aaKnown RBP12.81□□□□□ -0.36
ZNF540-203ENST00000586134 BACH2Q9BYV9 841 aa12.8□□□□□ -0.36
ZNF540-203ENST00000586134 USP32Q8NFA0 1604 aa12.8□□□□□ -0.36
ZNF540-203ENST00000586134 TNNT2P45379 298 aaPredicted RBP12.79□□□□□ -0.36
ZNF540-203ENST00000586134 MEX3CQ5U5Q3 659 aaKnown RBP12.79□□□□□ -0.36
ZNF540-203ENST00000586134 NPM2Q86SE8 214 aaKnown RBP12.79□□□□□ -0.36
ZNF540-203ENST00000586134 ESCO1Q5FWF5 840 aa12.79□□□□□ -0.36
ZNF540-203ENST00000586134 ITSN1Q15811 1721 aa12.78□□□□□ -0.36
ZNF540-203ENST00000586134 PDE4AP27815 886 aa12.78□□□□□ -0.36
ZNF540-203ENST00000586134 TAF3Q5VWG9 929 aa12.78□□□□□ -0.36
ZNF540-203ENST00000586134 PRAM1Q96QH2 718 aa12.78□□□□□ -0.36
ZNF540-203ENST00000586134 TMEM51Q9NW97 253 aa12.78□□□□□ -0.36
ZNF540-203ENST00000586134 RNF123Q5XPI4 1314 aa12.77□□□□□ -0.36
ZNF540-203ENST00000586134 TULP4Q9NRJ4 1543 aa12.77□□□□□ -0.37
ZNF540-203ENST00000586134 DMTNQ08495 405 aa12.77□□□□□ -0.37
ZNF540-203ENST00000586134 SAMD1Q6SPF0 538 aaPredicted RBP12.77□□□□□ -0.37
ZNF540-203ENST00000586134 DDX17Q92841 729 aaKnown RBP12.77□□□□□ -0.37
ZNF540-203ENST00000586134 KIF20AO95235 890 aa12.76□□□□□ -0.37
ZNF540-203ENST00000586134 POGKQ9P215 609 aa12.76□□□□□ -0.37
ZNF540-203ENST00000586134 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.76□□□□□ -0.37
ZNF540-203ENST00000586134 ZBED9Q6R2W3 1325 aa12.75□□□□□ -0.37
ZNF540-203ENST00000586134 SBNO1A3KN83 1393 aa12.75□□□□□ -0.37
ZNF540-203ENST00000586134 KDM2AQ9Y2K7 1162 aa12.75□□□□□ -0.37
ZNF540-203ENST00000586134 ANP32BQ92688 251 aaKnown RBP12.74□□□□□ -0.37
ZNF540-203ENST00000586134 TRPM3Q9HCF6 1732 aaPredicted RBP12.74□□□□□ -0.37
ZNF540-203ENST00000586134 AFF2P51816 1311 aa12.74□□□□□ -0.37
ZNF540-203ENST00000586134 SPATA31A3Q5VYP0 1347 aa12.74□□□□□ -0.37
ZNF540-203ENST00000586134 FOXO3O43524 673 aa12.74□□□□□ -0.37
ZNF540-203ENST00000586134 PHF8Q9UPP1 1060 aa12.74□□□□□ -0.37
ZNF540-203ENST00000586134 ABCA3Q99758 1704 aa12.73□□□□□ -0.37
ZNF540-203ENST00000586134 TNS3Q68CZ2 1445 aa12.73□□□□□ -0.37
ZNF540-203ENST00000586134 NUTM2BA6NNL0 878 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-203ENST00000586134 NUTM2EB1AL46 878 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-203ENST00000586134 PSME1Q06323 249 aa12.73□□□□□ -0.37
ZNF540-203ENST00000586134 NUTM2AQ8IVF1 878 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-203ENST00000586134 PPP4R3BQ5MIZ7 849 aa12.72□□□□□ -0.37
ZNF540-203ENST00000586134 FNBP4Q8N3X1 1017 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-203ENST00000586134 SECISBP2LQ93073 1101 aaKnown RBP12.72□□□□□ -0.37
ZNF540-203ENST00000586134 TRAK1Q9UPV9 953 aa12.72□□□□□ -0.37
ZNF540-203ENST00000586134 TOPAZ1Q8N9V7 1692 aa12.72□□□□□ -0.37
ZNF540-203ENST00000586134 ALS2Q96Q42 1657 aa12.72□□□□□ -0.37
ZNF540-203ENST00000586134 HSP90B1P14625 803 aaKnown RBP12.72□□□□□ -0.37
ZNF540-203ENST00000586134 ARHGEF10O15013 1369 aa12.72□□□□□ -0.37
ZNF540-203ENST00000586134 NWD2Q9ULI1 1742 aa12.71□□□□□ -0.37
ZNF540-203ENST00000586134 WASLO00401 505 aaPredicted RBP12.71□□□□□ -0.37
ZNF540-203ENST00000586134 RXRBP28702 533 aa12.71□□□□□ -0.37
ZNF540-203ENST00000586134 CNKSR2Q8WXI2 1034 aa12.71□□□□□ -0.37
ZNF540-203ENST00000586134 ZNF830Q96NB3 372 aaPredicted RBP12.71□□□□□ -0.37
ZNF540-203ENST00000586134 TRPM1Q7Z4N2 1603 aa12.71□□□□□ -0.37
ZNF540-203ENST00000586134 ESPNB1AK53 854 aa12.71□□□□□ -0.38
ZNF540-203ENST00000586134 FRAT2O75474 233 aaPredicted RBP12.71□□□□□ -0.38
ZNF540-203ENST00000586134 KRT28Q7Z3Y7 464 aa12.71□□□□□ -0.38
ZNF540-203ENST00000586134 GTPBP4Q9BZE4 634 aaKnown RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms