RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CHD2O14647 1828 aaKnown RBP18.68■□□□□ 0.58
LIG3-205ENST00000585941 PNPLA6Q8IY17 1366 aa18.68■□□□□ 0.58
LIG3-205ENST00000585941 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.67■□□□□ 0.58
LIG3-205ENST00000585941 PNNQ9H307 717 aaKnown RBP18.66■□□□□ 0.58
LIG3-205ENST00000585941 AATKQ6ZMQ8 1374 aa18.66■□□□□ 0.58
LIG3-205ENST00000585941 IQSEC2Q5JU85 1478 aa18.65■□□□□ 0.58
LIG3-205ENST00000585941 NRKQ7Z2Y5 1582 aa18.65■□□□□ 0.58
LIG3-205ENST00000585941 MAP2P11137 1827 aaKnown RBP18.65■□□□□ 0.58
LIG3-205ENST00000585941 ANKARQ7Z5J8 1434 aa18.65■□□□□ 0.58
LIG3-205ENST00000585941 E9PSI1 815 aa18.64■□□□□ 0.57
LIG3-205ENST00000585941 U2AF1L5P0DN76 240 aaPredicted RBP18.64■□□□□ 0.57
LIG3-205ENST00000585941 RRP1P56182 461 aaKnown RBP18.64■□□□□ 0.57
LIG3-205ENST00000585941 U2AF1Q01081 240 aaKnown RBP eCLIP18.64■□□□□ 0.57
LIG3-205ENST00000585941 SLFN5Q08AF3 891 aa18.64■□□□□ 0.57
LIG3-205ENST00000585941 DUSP27Q5VZP5 1158 aa18.64■□□□□ 0.57
LIG3-205ENST00000585941 COG3Q96JB2 828 aa18.64■□□□□ 0.57
LIG3-205ENST00000585941 TRMT2AQ8IZ69 625 aaKnown RBP18.63■□□□□ 0.57
LIG3-205ENST00000585941 DIAPH1O60610 1272 aaKnown RBP18.63■□□□□ 0.57
LIG3-205ENST00000585941 CCDC27Q2M243 656 aa18.63■□□□□ 0.57
LIG3-205ENST00000585941 ACEP12821 1306 aa18.62■□□□□ 0.57
LIG3-205ENST00000585941 KCNA6P17658 529 aa18.62■□□□□ 0.57
LIG3-205ENST00000585941 USP6P35125 1406 aa18.61■□□□□ 0.57
LIG3-205ENST00000585941 NCKAP5LQ9HCH0 1330 aa18.61■□□□□ 0.57
LIG3-205ENST00000585941 NME9Q86XW9 330 aa18.61■□□□□ 0.57
LIG3-205ENST00000585941 TCP11L2Q8N4U5 519 aa18.61■□□□□ 0.57
LIG3-205ENST00000585941 FMN2Q9NZ56 1722 aa18.61■□□□□ 0.57
LIG3-205ENST00000585941 POLKQ9UBT6 870 aa18.6■□□□□ 0.57
LIG3-205ENST00000585941 CDK12Q9NYV4 1490 aaPredicted RBP18.6■□□□□ 0.57
LIG3-205ENST00000585941 NPHP4O75161 1426 aaPredicted RBP18.6■□□□□ 0.57
LIG3-205ENST00000585941 TTC21BQ7Z4L5 1316 aa18.6■□□□□ 0.57
LIG3-205ENST00000585941 WDR63Q8IWG1 891 aa18.6■□□□□ 0.57
LIG3-205ENST00000585941 WWC1Q8IX03 1113 aa18.6■□□□□ 0.57
LIG3-205ENST00000585941 PHF23Q9BUL5 403 aaPredicted RBP18.6■□□□□ 0.57
LIG3-205ENST00000585941 NKTRP30414 1462 aaKnown RBP18.59■□□□□ 0.57
LIG3-205ENST00000585941 TTC21AQ8NDW8 1320 aa18.59■□□□□ 0.57
LIG3-205ENST00000585941 U2SURPO15042 1029 aaKnown RBP18.58■□□□□ 0.57
LIG3-205ENST00000585941 RGPD8O14715 1765 aaPredicted RBP18.57■□□□□ 0.56
LIG3-205ENST00000585941 SSH2Q76I76 1423 aa18.57■□□□□ 0.56
LIG3-205ENST00000585941 NALCNQ8IZF0 1738 aa18.56■□□□□ 0.56
LIG3-205ENST00000585941 MAPK8IP3Q9UPT6 1336 aa18.56■□□□□ 0.56
LIG3-205ENST00000585941 FCHSD2O94868 740 aa18.56■□□□□ 0.56
LIG3-205ENST00000585941 OVOS2A0A0J9YW53 1432 aa18.55■□□□□ 0.56
LIG3-205ENST00000585941 OVOS2Q6IE36 1432 aa18.55■□□□□ 0.56
LIG3-205ENST00000585941 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.55■□□□□ 0.56
LIG3-205ENST00000585941 PLEKHF1Q96S99 279 aa18.55■□□□□ 0.56
LIG3-205ENST00000585941 NUTM2FA1L443 756 aa18.54■□□□□ 0.56
LIG3-205ENST00000585941 NGDNQ8NEJ9 315 aaKnown RBP18.54■□□□□ 0.56
LIG3-205ENST00000585941 NEFMP07197 916 aa18.53■□□□□ 0.56
LIG3-205ENST00000585941 NWD1Q149M9 1564 aa18.52■□□□□ 0.56
LIG3-205ENST00000585941 USP31Q70CQ4 1352 aa18.52■□□□□ 0.56
LIG3-205ENST00000585941 PPM1GO15355 546 aaPredicted RBP18.52■□□□□ 0.56
LIG3-205ENST00000585941 ADGRL3Q9HAR2 1447 aa18.52■□□□□ 0.56
LIG3-205ENST00000585941 NEUROD2Q15784 382 aa18.51■□□□□ 0.55
LIG3-205ENST00000585941 ZRANB1Q9UGI0 708 aa18.51■□□□□ 0.55
LIG3-205ENST00000585941 SPINK5Q9NQ38 1064 aaPredicted RBP18.5■□□□□ 0.55
LIG3-205ENST00000585941 RRP7AQ9Y3A4 280 aaKnown RBP18.5■□□□□ 0.55
LIG3-205ENST00000585941 EMILIN1Q9Y6C2 1016 aa18.5■□□□□ 0.55
LIG3-205ENST00000585941 TMPOP42166 694 aaKnown RBP18.5■□□□□ 0.55
LIG3-205ENST00000585941 MYH16Q9H6N6 1097 aa18.5■□□□□ 0.55
LIG3-205ENST00000585941 LRRC7Q96NW7 1537 aa18.49■□□□□ 0.55
LIG3-205ENST00000585941 IL13P35225 146 aa18.49■□□□□ 0.55
LIG3-205ENST00000585941 PMFBP1Q8TBY8 1022 aa18.49■□□□□ 0.55
LIG3-205ENST00000585941 CCDC136Q96JN2 1154 aa18.49■□□□□ 0.55
LIG3-205ENST00000585941 USP54Q70EL1 1684 aa18.48■□□□□ 0.55
LIG3-205ENST00000585941 B4GALNT3Q6L9W6 998 aa18.48■□□□□ 0.55
LIG3-205ENST00000585941 IL16Q14005 1332 aa18.48■□□□□ 0.55
LIG3-205ENST00000585941 RSPH6AQ9H0K4 717 aa18.47■□□□□ 0.55
LIG3-205ENST00000585941 DMRT2Q9Y5R5 561 aa18.47■□□□□ 0.55
LIG3-205ENST00000585941 FBLN1P23142 703 aa18.46■□□□□ 0.55
LIG3-205ENST00000585941 PIK3C2AO00443 1686 aa18.45■□□□□ 0.54
LIG3-205ENST00000585941 RRS1Q15050 365 aaKnown RBP18.45■□□□□ 0.54
LIG3-205ENST00000585941 CT47B1P0C2W7 299 aaPredicted RBP18.44■□□□□ 0.54
LIG3-205ENST00000585941 EXOC6Q8TAG9 804 aa18.44■□□□□ 0.54
LIG3-205ENST00000585941 PRKAR2BP31323 418 aa18.44■□□□□ 0.54
LIG3-205ENST00000585941 PHF8Q9UPP1 1060 aa18.44■□□□□ 0.54
LIG3-205ENST00000585941 KIF24Q5T7B8 1368 aa18.43■□□□□ 0.54
LIG3-205ENST00000585941 RIPK4P57078 832 aa18.43■□□□□ 0.54
LIG3-205ENST00000585941 TRIM35Q9UPQ4 493 aa18.42■□□□□ 0.54
LIG3-205ENST00000585941 PLIN1O60240 522 aa18.41■□□□□ 0.54
LIG3-205ENST00000585941 CALD1Q05682 793 aaKnown RBP18.41■□□□□ 0.54
LIG3-205ENST00000585941 SBNO1A3KN83 1393 aa18.41■□□□□ 0.54
LIG3-205ENST00000585941 NFE2L2Q16236 605 aa18.41■□□□□ 0.54
LIG3-205ENST00000585941 TSHZ2Q9NRE2 1034 aa18.41■□□□□ 0.54
LIG3-205ENST00000585941 PEAK1Q9H792 1746 aa18.4■□□□□ 0.54
LIG3-205ENST00000585941 C14orf37Q86TY3 774 aa18.4■□□□□ 0.54
LIG3-205ENST00000585941 FLT4P35916 1363 aa18.39■□□□□ 0.54
LIG3-205ENST00000585941 LMOD3Q0VAK6 560 aa18.39■□□□□ 0.53
LIG3-205ENST00000585941 HMOX1P09601 288 aa18.38■□□□□ 0.53
LIG3-205ENST00000585941 NLRP6P59044 892 aa18.38■□□□□ 0.53
LIG3-205ENST00000585941 EIF4A2Q14240 407 aaKnown RBP18.38■□□□□ 0.53
LIG3-205ENST00000585941 CRBNQ96SW2 442 aa18.38■□□□□ 0.53
LIG3-205ENST00000585941 NCOA3Q9Y6Q9 1424 aa18.38■□□□□ 0.53
LIG3-205ENST00000585941 RGPD1P0DJD0 1748 aa18.38■□□□□ 0.53
LIG3-205ENST00000585941 PDE3AQ14432 1141 aa18.38■□□□□ 0.53
LIG3-205ENST00000585941 PROSER2Q86WR7 435 aaPredicted RBP18.38■□□□□ 0.53
LIG3-205ENST00000585941 MARF1Q9Y4F3 1742 aaKnown RBP18.38■□□□□ 0.53
LIG3-205ENST00000585941 MAP3K19Q56UN5 1328 aa18.36■□□□□ 0.53
LIG3-205ENST00000585941 RARSP54136 660 aaKnown RBP18.36■□□□□ 0.53
LIG3-205ENST00000585941 ABTB2Q8N961 1025 aa18.36■□□□□ 0.53
LIG3-205ENST00000585941 KIF1AQ12756 1690 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms