RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 APAF1O14727 1248 aa14.8□□□□□ -0.04
LIG3-204ENST00000585740 FYB1O15117 783 aa14.8□□□□□ -0.04
LIG3-204ENST00000585740 LTKP29376 864 aa14.8□□□□□ -0.04
LIG3-204ENST00000585740 TNNT2P45379 298 aaPredicted RBP14.8□□□□□ -0.04
LIG3-204ENST00000585740 CCDC146Q8IYE0 955 aa14.8□□□□□ -0.04
LIG3-204ENST00000585740 TBX22Q9Y458 520 aa14.8□□□□□ -0.04
LIG3-204ENST00000585740 CPSF1Q10570 1443 aaKnown RBP14.8□□□□□ -0.04
LIG3-204ENST00000585740 PPIP5K1Q6PFW1 1433 aa14.8□□□□□ -0.04
LIG3-204ENST00000585740 E9PSI1 815 aa14.79□□□□□ -0.04
LIG3-204ENST00000585740 SLFN5Q08AF3 891 aa14.79□□□□□ -0.04
LIG3-204ENST00000585740 PTCH1Q13635 1447 aa14.78□□□□□ -0.04
LIG3-204ENST00000585740 DUSP27Q5VZP5 1158 aa14.78□□□□□ -0.04
LIG3-204ENST00000585740 NUDT16Q96DE0 195 aaKnown RBP14.78□□□□□ -0.04
LIG3-204ENST00000585740 ZNF692Q9BU19 519 aaPredicted RBP14.78□□□□□ -0.04
LIG3-204ENST00000585740 GGNBP2Q9H3C7 697 aa14.78□□□□□ -0.04
LIG3-204ENST00000585740 CCDC61Q9Y6R9 512 aa14.78□□□□□ -0.04
LIG3-204ENST00000585740 TOPAZ1Q8N9V7 1692 aa14.77□□□□□ -0.04
LIG3-204ENST00000585740 LRRC7Q96NW7 1537 aa14.77□□□□□ -0.04
LIG3-204ENST00000585740 PIK3R4Q99570 1358 aa14.77□□□□□ -0.04
LIG3-204ENST00000585740 TRMT2AQ8IZ69 625 aaKnown RBP14.77□□□□□ -0.05
LIG3-204ENST00000585740 PNNQ9H307 717 aaKnown RBP14.77□□□□□ -0.05
LIG3-204ENST00000585740 TSHZ2Q9NRE2 1034 aa14.77□□□□□ -0.05
LIG3-204ENST00000585740 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.77□□□□□ -0.05
LIG3-204ENST00000585740 COL3A1P02461 1466 aaPredicted RBP14.76□□□□□ -0.05
LIG3-204ENST00000585740 ROBO2Q9HCK4 1378 aa14.76□□□□□ -0.05
LIG3-204ENST00000585740 CCDC27Q2M243 656 aa14.76□□□□□ -0.05
LIG3-204ENST00000585740 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.76□□□□□ -0.05
LIG3-204ENST00000585740 NKTRP30414 1462 aaKnown RBP14.76□□□□□ -0.05
LIG3-204ENST00000585740 MAP2P11137 1827 aaKnown RBP14.75□□□□□ -0.05
LIG3-204ENST00000585740 XRN1Q8IZH2 1706 aaKnown RBP14.75□□□□□ -0.05
LIG3-204ENST00000585740 PNPLA6Q8IY17 1366 aa14.74□□□□□ -0.05
LIG3-204ENST00000585740 WDR63Q8IWG1 891 aa14.74□□□□□ -0.05
LIG3-204ENST00000585740 CCDC136Q96JN2 1154 aa14.74□□□□□ -0.05
LIG3-204ENST00000585740 PTPRUQ92729 1446 aa14.74□□□□□ -0.05
LIG3-204ENST00000585740 U2AF1L5P0DN76 240 aaPredicted RBP14.73□□□□□ -0.05
LIG3-204ENST00000585740 U2AF1Q01081 240 aaKnown RBP eCLIP14.73□□□□□ -0.05
LIG3-204ENST00000585740 B4GALNT3Q6L9W6 998 aa14.73□□□□□ -0.05
LIG3-204ENST00000585740 POTEAQ6S8J7 498 aa14.73□□□□□ -0.05
LIG3-204ENST00000585740 STRCP1A6NGW2 1772 aa14.73□□□□□ -0.05
LIG3-204ENST00000585740 AATKQ6ZMQ8 1374 aa14.73□□□□□ -0.05
LIG3-204ENST00000585740 DIAPH1O60610 1272 aaKnown RBP14.72□□□□□ -0.05
LIG3-204ENST00000585740 TCP11L2Q8N4U5 519 aa14.72□□□□□ -0.05
LIG3-204ENST00000585740 PLEKHG3A1L390 1219 aa14.71□□□□□ -0.05
LIG3-204ENST00000585740 WWC1Q8IX03 1113 aa14.71□□□□□ -0.05
LIG3-204ENST00000585740 AMOTL2Q9Y2J4 779 aa14.71□□□□□ -0.05
LIG3-204ENST00000585740 NRKQ7Z2Y5 1582 aa14.71□□□□□ -0.05
LIG3-204ENST00000585740 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.7□□□□□ -0.06
LIG3-204ENST00000585740 SLC26A8Q96RN1 970 aa14.7□□□□□ -0.06
LIG3-204ENST00000585740 COG3Q96JB2 828 aa14.69□□□□□ -0.06
LIG3-204ENST00000585740 CDK12Q9NYV4 1490 aaPredicted RBP14.69□□□□□ -0.06
LIG3-204ENST00000585740 PRR36Q9H6K5 1346 aa14.68□□□□□ -0.06
LIG3-204ENST00000585740 MAPK8IP3Q9UPT6 1336 aa14.68□□□□□ -0.06
LIG3-204ENST00000585740 CHD2O14647 1828 aaKnown RBP14.68□□□□□ -0.06
LIG3-204ENST00000585740 ANKARQ7Z5J8 1434 aa14.67□□□□□ -0.06
LIG3-204ENST00000585740 U2SURPO15042 1029 aaKnown RBP14.67□□□□□ -0.06
LIG3-204ENST00000585740 EXOC6Q8TAG9 804 aa14.67□□□□□ -0.06
LIG3-204ENST00000585740 FCHSD2O94868 740 aa14.66□□□□□ -0.06
LIG3-204ENST00000585740 NEFMP07197 916 aa14.66□□□□□ -0.06
LIG3-204ENST00000585740 MYH16Q9H6N6 1097 aa14.66□□□□□ -0.06
LIG3-204ENST00000585740 POLKQ9UBT6 870 aa14.66□□□□□ -0.06
LIG3-204ENST00000585740 PLEKHF1Q96S99 279 aa14.65□□□□□ -0.06
LIG3-204ENST00000585740 NALCNQ8IZF0 1738 aa14.65□□□□□ -0.06
LIG3-204ENST00000585740 USP6P35125 1406 aa14.65□□□□□ -0.06
LIG3-204ENST00000585740 IL16Q14005 1332 aa14.65□□□□□ -0.06
LIG3-204ENST00000585740 TTC21BQ7Z4L5 1316 aa14.65□□□□□ -0.06
LIG3-204ENST00000585740 TTC21AQ8NDW8 1320 aa14.65□□□□□ -0.06
LIG3-204ENST00000585740 FMN2Q9NZ56 1722 aa14.64□□□□□ -0.07
LIG3-204ENST00000585740 CT47B1P0C2W7 299 aaPredicted RBP14.64□□□□□ -0.07
LIG3-204ENST00000585740 NME9Q86XW9 330 aa14.64□□□□□ -0.07
LIG3-204ENST00000585740 SPINK5Q9NQ38 1064 aaPredicted RBP14.64□□□□□ -0.07
LIG3-204ENST00000585740 ACEP12821 1306 aa14.64□□□□□ -0.07
LIG3-204ENST00000585740 TMPOP42166 694 aaKnown RBP14.63□□□□□ -0.07
LIG3-204ENST00000585740 NEUROD2Q15784 382 aa14.63□□□□□ -0.07
LIG3-204ENST00000585740 CRBNQ96SW2 442 aa14.63□□□□□ -0.07
LIG3-204ENST00000585740 OVOS2A0A0J9YW53 1432 aa14.62□□□□□ -0.07
LIG3-204ENST00000585740 OVOS2Q6IE36 1432 aa14.62□□□□□ -0.07
LIG3-204ENST00000585740 RRP7AQ9Y3A4 280 aaKnown RBP14.62□□□□□ -0.07
LIG3-204ENST00000585740 RGPD8O14715 1765 aaPredicted RBP14.62□□□□□ -0.07
LIG3-204ENST00000585740 SSH2Q76I76 1423 aa14.61□□□□□ -0.07
LIG3-204ENST00000585740 PLIN1O60240 522 aa14.61□□□□□ -0.07
LIG3-204ENST00000585740 USP31Q70CQ4 1352 aa14.6□□□□□ -0.07
LIG3-204ENST00000585740 USP54Q70EL1 1684 aa14.59□□□□□ -0.07
LIG3-204ENST00000585740 PPM1GO15355 546 aaPredicted RBP14.59□□□□□ -0.07
LIG3-204ENST00000585740 IL13P35225 146 aa14.59□□□□□ -0.07
LIG3-204ENST00000585740 PDE3AQ14432 1141 aa14.59□□□□□ -0.07
LIG3-204ENST00000585740 RSPH6AQ9H0K4 717 aa14.59□□□□□ -0.07
LIG3-204ENST00000585740 KCNA6P17658 529 aa14.58□□□□□ -0.08
LIG3-204ENST00000585740 CALD1Q05682 793 aaKnown RBP14.58□□□□□ -0.08
LIG3-204ENST00000585740 RBM19Q9Y4C8 960 aaKnown RBP14.58□□□□□ -0.08
LIG3-204ENST00000585740 EMILIN1Q9Y6C2 1016 aa14.58□□□□□ -0.08
LIG3-204ENST00000585740 TMEM94Q12767 1356 aa14.58□□□□□ -0.08
LIG3-204ENST00000585740 XIRP1Q702N8 1843 aaKnown RBP14.57□□□□□ -0.08
LIG3-204ENST00000585740 RIPK4P57078 832 aa14.57□□□□□ -0.08
LIG3-204ENST00000585740 AAMPQ13685 434 aa14.57□□□□□ -0.08
LIG3-204ENST00000585740 NGDNQ8NEJ9 315 aaKnown RBP14.57□□□□□ -0.08
LIG3-204ENST00000585740 ZRANB1Q9UGI0 708 aa14.57□□□□□ -0.08
LIG3-204ENST00000585740 PRKAR2BP31323 418 aa14.56□□□□□ -0.08
LIG3-204ENST00000585740 LMOD3Q0VAK6 560 aa14.56□□□□□ -0.08
LIG3-204ENST00000585740 NFE2L2Q16236 605 aa14.56□□□□□ -0.08
LIG3-204ENST00000585740 RBM33Q96EV2 1170 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms