RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 DDX17Q92841 729 aaKnown RBP21.59■■□□□ 1.05
SMPD3-212ENST00000574662 USP6P35125 1406 aa21.59■■□□□ 1.05
SMPD3-212ENST00000574662 SSH2Q76I76 1423 aa21.58■■□□□ 1.05
SMPD3-212ENST00000574662 FYB1O15117 783 aa21.58■■□□□ 1.04
SMPD3-212ENST00000574662 PRKRIP1Q9H875 184 aaPredicted RBP21.58■■□□□ 1.04
SMPD3-212ENST00000574662 EDC4Q6P2E9 1401 aaKnown RBP21.58■■□□□ 1.04
SMPD3-212ENST00000574662 TTC21BQ7Z4L5 1316 aa21.57■■□□□ 1.04
SMPD3-212ENST00000574662 XPCQ01831 940 aaPredicted RBP21.57■■□□□ 1.04
SMPD3-212ENST00000574662 PSME1Q06323 249 aa21.57■■□□□ 1.04
SMPD3-212ENST00000574662 CGNL1Q0VF96 1302 aa21.57■■□□□ 1.04
SMPD3-212ENST00000574662 MON2Q7Z3U7 1717 aa21.56■■□□□ 1.04
SMPD3-212ENST00000574662 FKBP8Q14318 412 aa21.56■■□□□ 1.04
SMPD3-212ENST00000574662 NME9Q86XW9 330 aa21.55■■□□□ 1.04
SMPD3-212ENST00000574662 GGNBP2Q9H3C7 697 aa21.55■■□□□ 1.04
SMPD3-212ENST00000574662 TSHZ2Q9NRE2 1034 aa21.55■■□□□ 1.04
SMPD3-212ENST00000574662 ZRANB1Q9UGI0 708 aa21.55■■□□□ 1.04
SMPD3-212ENST00000574662 NPC1L1Q9UHC9 1359 aa21.55■■□□□ 1.04
SMPD3-212ENST00000574662 KRT28Q7Z3Y7 464 aa21.54■■□□□ 1.04
SMPD3-212ENST00000574662 TOM1O60784 492 aa21.53■■□□□ 1.04
SMPD3-212ENST00000574662 KIF1AQ12756 1690 aa21.53■■□□□ 1.04
SMPD3-212ENST00000574662 NRKQ7Z2Y5 1582 aa21.52■■□□□ 1.03
SMPD3-212ENST00000574662 PAK3O75914 559 aaPredicted RBP21.51■■□□□ 1.03
SMPD3-212ENST00000574662 PARD3Q8TEW0 1356 aa21.5■■□□□ 1.03
SMPD3-212ENST00000574662 NPHP3Q7Z494 1330 aa21.5■■□□□ 1.03
SMPD3-212ENST00000574662 RALBP1Q15311 655 aa21.49■■□□□ 1.03
SMPD3-212ENST00000574662 TTC21AQ8NDW8 1320 aa21.49■■□□□ 1.03
SMPD3-212ENST00000574662 MORC1Q86VD1 984 aa21.48■■□□□ 1.03
SMPD3-212ENST00000574662 BRD4O60885 1362 aaPredicted RBP21.47■■□□□ 1.03
SMPD3-212ENST00000574662 NSD2O96028 1365 aa21.47■■□□□ 1.03
SMPD3-212ENST00000574662 PIP4K2BP78356 416 aa21.47■■□□□ 1.03
SMPD3-212ENST00000574662 NUTM2GQ5VZR2 741 aa21.47■■□□□ 1.03
SMPD3-212ENST00000574662 ABTB2Q8N961 1025 aa21.46■■□□□ 1.03
SMPD3-212ENST00000574662 PXDNQ92626 1479 aa21.46■■□□□ 1.03
SMPD3-212ENST00000574662 TNNT2P45379 298 aaPredicted RBP21.46■■□□□ 1.03
SMPD3-212ENST00000574662 SOS2Q07890 1332 aaPredicted RBP21.45■■□□□ 1.02
SMPD3-212ENST00000574662 ROBO1Q9Y6N7 1651 aa21.44■■□□□ 1.02
SMPD3-212ENST00000574662 FBLN1P23142 703 aa21.44■■□□□ 1.02
SMPD3-212ENST00000574662 KIF20BQ96Q89 1820 aa21.44■■□□□ 1.02
SMPD3-212ENST00000574662 NLRP6P59044 892 aa21.43■■□□□ 1.02
SMPD3-212ENST00000574662 COG3Q96JB2 828 aa21.43■■□□□ 1.02
SMPD3-212ENST00000574662 TRPM3Q9HCF6 1732 aaPredicted RBP21.43■■□□□ 1.02
SMPD3-212ENST00000574662 USP31Q70CQ4 1352 aa21.43■■□□□ 1.02
SMPD3-212ENST00000574662 PPP2R1AP30153 589 aa21.43■■□□□ 1.02
SMPD3-212ENST00000574662 CCDC184Q52MB2 194 aa21.43■■□□□ 1.02
SMPD3-212ENST00000574662 PIK3C2AO00443 1686 aa21.42■■□□□ 1.02
SMPD3-212ENST00000574662 SBNO1A3KN83 1393 aa21.42■■□□□ 1.02
SMPD3-212ENST00000574662 LMOD2Q6P5Q4 547 aa21.42■■□□□ 1.02
SMPD3-212ENST00000574662 MYBBP1AQ9BQG0 1328 aaKnown RBP21.41■■□□□ 1.02
SMPD3-212ENST00000574662 OVOS2A0A0J9YW53 1432 aa21.41■■□□□ 1.02
SMPD3-212ENST00000574662 OVOS2Q6IE36 1432 aa21.41■■□□□ 1.02
SMPD3-212ENST00000574662 SPATA31A3Q5VYP0 1347 aa21.41■■□□□ 1.02
SMPD3-212ENST00000574662 NHSL1Q5SYE7 1610 aa21.39■■□□□ 1.02
SMPD3-212ENST00000574662 ANKRD26Q9UPS8 1709 aa21.39■■□□□ 1.01
SMPD3-212ENST00000574662 HNRNPUQ00839 825 aaKnown RBP eCLIP21.38■■□□□ 1.01
SMPD3-212ENST00000574662 PLEKHG5O94827 1062 aa21.37■■□□□ 1.01
SMPD3-212ENST00000574662 TNS3Q68CZ2 1445 aa21.37■■□□□ 1.01
SMPD3-212ENST00000574662 NLRP13Q86W25 1043 aa21.37■■□□□ 1.01
SMPD3-212ENST00000574662 ALS2Q96Q42 1657 aa21.36■■□□□ 1.01
SMPD3-212ENST00000574662 SOX12O15370 315 aa21.36■■□□□ 1.01
SMPD3-212ENST00000574662 AHDC1Q5TGY3 1603 aaPredicted RBP21.35■■□□□ 1.01
SMPD3-212ENST00000574662 MARF1Q9Y4F3 1742 aaKnown RBP21.35■■□□□ 1.01
SMPD3-212ENST00000574662 MTHFSP49914 203 aa21.34■■□□□ 1.01
SMPD3-212ENST00000574662 POLKQ9UBT6 870 aa21.34■■□□□ 1.01
SMPD3-212ENST00000574662 RRS1Q15050 365 aaKnown RBP21.33■■□□□ 1
SMPD3-212ENST00000574662 CABLES1Q8TDN4 633 aa21.33■■□□□ 1
SMPD3-212ENST00000574662 AATKQ6ZMQ8 1374 aa21.32■■□□□ 1
SMPD3-212ENST00000574662 LRRC59Q96AG4 307 aaKnown RBP21.32■■□□□ 1
SMPD3-212ENST00000574662 USP54Q70EL1 1684 aa21.32■■□□□ 1
SMPD3-212ENST00000574662 USP19O94966 1318 aa21.32■■□□□ 1
SMPD3-212ENST00000574662 GCP02774 474 aa21.31■■□□□ 1
SMPD3-212ENST00000574662 HSPA1LP34931 641 aa21.31■■□□□ 1
SMPD3-212ENST00000574662 ERICH6BQ5W0A0 696 aa21.31■■□□□ 1
SMPD3-212ENST00000574662 MRS2Q9HD23 443 aa21.31■■□□□ 1
SMPD3-212ENST00000574662 EMILIN1Q9Y6C2 1016 aa21.31■■□□□ 1
SMPD3-212ENST00000574662 ARHGEF10O15013 1369 aa21.31■■□□□ 1
SMPD3-212ENST00000574662 MED1Q15648 1581 aaPredicted RBP21.29■■□□□ 1
SMPD3-212ENST00000574662 PHLPP1O60346 1717 aa21.28■■□□□ 1
SMPD3-212ENST00000574662 PPM1GO15355 546 aaPredicted RBP21.28■■□□□ 1
SMPD3-212ENST00000574662 SLIT3O75094 1523 aa21.27■■□□□ 1
SMPD3-212ENST00000574662 KCNH5Q8NCM2 988 aa21.27■■□□□ 1
SMPD3-212ENST00000574662 MAP3K19Q56UN5 1328 aa21.27■■□□□ 1
SMPD3-212ENST00000574662 MAP2P11137 1827 aaKnown RBP21.27■■□□□ 1
SMPD3-212ENST00000574662 COL16A1Q07092 1604 aaPredicted RBP21.26■□□□□ 0.99
SMPD3-212ENST00000574662 NFAT5O94916 1531 aa21.25■□□□□ 0.99
SMPD3-212ENST00000574662 ZBED9Q6R2W3 1325 aa21.24■□□□□ 0.99
SMPD3-212ENST00000574662 ZC3H6P61129 1189 aaKnown RBP21.24■□□□□ 0.99
SMPD3-212ENST00000574662 PNPLA6Q8IY17 1366 aa21.23■□□□□ 0.99
SMPD3-212ENST00000574662 PNISRQ8TF01 805 aaKnown RBP21.23■□□□□ 0.99
SMPD3-212ENST00000574662 SMG6Q86US8 1419 aaKnown RBP21.23■□□□□ 0.99
SMPD3-212ENST00000574662 ARHGEF25Q86VW2 580 aa21.23■□□□□ 0.99
SMPD3-212ENST00000574662 CRYBG1Q9Y4K1 1723 aa21.21■□□□□ 0.99
SMPD3-212ENST00000574662 ZBTB7CA1YPR0 619 aa21.2■□□□□ 0.99
SMPD3-212ENST00000574662 AMPHP49418 695 aa21.2■□□□□ 0.99
SMPD3-212ENST00000574662 HSP90AB2PQ58FF8 381 aa21.2■□□□□ 0.99
SMPD3-212ENST00000574662 INSRP06213 1382 aa21.2■□□□□ 0.98
SMPD3-212ENST00000574662 PEAK1Q9H792 1746 aa21.2■□□□□ 0.98
SMPD3-212ENST00000574662 CFAP53Q96M91 514 aa21.2■□□□□ 0.98
SMPD3-212ENST00000574662 PHRF1Q9P1Y6 1649 aaKnown RBP21.2■□□□□ 0.98
SMPD3-212ENST00000574662 COL3A1P02461 1466 aaPredicted RBP21.19■□□□□ 0.98
SMPD3-212ENST00000574662 HOXC9P31274 260 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms