RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 RGPD8O14715 1765 aaPredicted RBP15.47■□□□□ 0.07
CHD3-216ENST00000573936 EIF4G2P78344 907 aaKnown RBP eCLIP15.46■□□□□ 0.07
CHD3-216ENST00000573936 TESK2Q96S53 571 aa15.46■□□□□ 0.07
CHD3-216ENST00000573936 BCL9LQ86UU0 1499 aa15.46■□□□□ 0.06
CHD3-216ENST00000573936 TMF1P82094 1093 aa15.45■□□□□ 0.06
CHD3-216ENST00000573936 ITSN1Q15811 1721 aa15.45■□□□□ 0.06
CHD3-216ENST00000573936 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.45■□□□□ 0.06
CHD3-216ENST00000573936 CDCA8Q53HL2 280 aa15.44■□□□□ 0.06
CHD3-216ENST00000573936 SPATA31A3Q5VYP0 1347 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 PPIP5K1Q6PFW1 1433 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 CABP1Q9NZU7 370 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 SBNO1A3KN83 1393 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 ABCA3Q99758 1704 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 TNS3Q68CZ2 1445 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 ACEP12821 1306 aa15.43■□□□□ 0.06
CHD3-216ENST00000573936 POLR3AO14802 1390 aaPredicted RBP15.42■□□□□ 0.06
CHD3-216ENST00000573936 GJD4Q96KN9 370 aaPredicted RBP15.42■□□□□ 0.06
CHD3-216ENST00000573936 SF3B2Q13435 895 aaKnown RBP15.41■□□□□ 0.06
CHD3-216ENST00000573936 ZNF692Q9BU19 519 aaPredicted RBP15.41■□□□□ 0.06
CHD3-216ENST00000573936 BRD4O60885 1362 aaPredicted RBP15.4■□□□□ 0.06
CHD3-216ENST00000573936 SLIT2O94813 1529 aa15.4■□□□□ 0.06
CHD3-216ENST00000573936 PLEKHG5O94827 1062 aa15.4■□□□□ 0.06
CHD3-216ENST00000573936 HSPA5P11021 654 aaKnown RBP15.4■□□□□ 0.06
CHD3-216ENST00000573936 HAP1P54257 671 aaPredicted RBP15.4■□□□□ 0.06
CHD3-216ENST00000573936 PLCH1Q4KWH8 1693 aa15.4■□□□□ 0.06
CHD3-216ENST00000573936 TOPAZ1Q8N9V7 1692 aa15.4■□□□□ 0.06
CHD3-216ENST00000573936 GLI3P10071 1580 aa15.4■□□□□ 0.06
CHD3-216ENST00000573936 ARHGEF10O15013 1369 aa15.38■□□□□ 0.05
CHD3-216ENST00000573936 PAK3O75914 559 aaPredicted RBP15.38■□□□□ 0.05
CHD3-216ENST00000573936 TMC1Q8TDI8 760 aa15.38■□□□□ 0.05
CHD3-216ENST00000573936 NINLQ9Y2I6 1382 aa15.37■□□□□ 0.05
CHD3-216ENST00000573936 LMOD2Q6P5Q4 547 aa15.37■□□□□ 0.05
CHD3-216ENST00000573936 UNC5CLQ8IV45 518 aa15.37■□□□□ 0.05
CHD3-216ENST00000573936 HDGFL2Q7Z4V5 671 aaPredicted RBP15.36■□□□□ 0.05
CHD3-216ENST00000573936 CABLES1Q8TDN4 633 aa15.36■□□□□ 0.05
CHD3-216ENST00000573936 TRPM3Q9HCF6 1732 aaPredicted RBP15.35■□□□□ 0.05
CHD3-216ENST00000573936 NWD2Q9ULI1 1742 aa15.35■□□□□ 0.05
CHD3-216ENST00000573936 TERF2IPQ9NYB0 399 aa15.35■□□□□ 0.05
CHD3-216ENST00000573936 CCDC9Q9Y3X0 531 aaKnown RBP15.35■□□□□ 0.05
CHD3-216ENST00000573936 BRWD3Q6RI45 1802 aa15.34■□□□□ 0.05
CHD3-216ENST00000573936 ZEB1P37275 1124 aaPredicted RBP15.34■□□□□ 0.05
CHD3-216ENST00000573936 SLC12A5Q9H2X9 1139 aa15.34■□□□□ 0.05
CHD3-216ENST00000573936 USP6P35125 1406 aa15.34■□□□□ 0.05
CHD3-216ENST00000573936 BLMP54132 1417 aaPredicted RBP15.34■□□□□ 0.05
CHD3-216ENST00000573936 KTN1Q86UP2 1357 aaKnown RBP15.33■□□□□ 0.04
CHD3-216ENST00000573936 CPSF1Q10570 1443 aaKnown RBP15.33■□□□□ 0.04
CHD3-216ENST00000573936 ALS2Q96Q42 1657 aa15.32■□□□□ 0.04
CHD3-216ENST00000573936 ABTB2Q8N961 1025 aa15.32■□□□□ 0.04
CHD3-216ENST00000573936 SEPT12Q8IYM1 358 aa15.31■□□□□ 0.04
CHD3-216ENST00000573936 TTC21AQ8NDW8 1320 aa15.31■□□□□ 0.04
CHD3-216ENST00000573936 NRAPQ86VF7 1730 aa15.31■□□□□ 0.04
CHD3-216ENST00000573936 A0A0G2JS52 829 aa15.3■□□□□ 0.04
CHD3-216ENST00000573936 MYT1Q01538 1121 aa15.3■□□□□ 0.04
CHD3-216ENST00000573936 TTC21BQ7Z4L5 1316 aa15.3■□□□□ 0.04
CHD3-216ENST00000573936 DEFB132Q7Z7B7 95 aa15.3■□□□□ 0.04
CHD3-216ENST00000573936 NLRP13Q86W25 1043 aa15.3■□□□□ 0.04
CHD3-216ENST00000573936 SSH2Q76I76 1423 aa15.29■□□□□ 0.04
CHD3-216ENST00000573936 VPS72Q15906 364 aa15.29■□□□□ 0.04
CHD3-216ENST00000573936 ANKRD36BQ8N2N9 1353 aa15.28■□□□□ 0.04
CHD3-216ENST00000573936 POLR3GLQ9BT43 218 aa15.28■□□□□ 0.04
CHD3-216ENST00000573936 CRYBG1Q9Y4K1 1723 aa15.28■□□□□ 0.04
CHD3-216ENST00000573936 CD163L1Q9NR16 1453 aa15.27■□□□□ 0.04
CHD3-216ENST00000573936 EDC4Q6P2E9 1401 aaKnown RBP15.27■□□□□ 0.04
CHD3-216ENST00000573936 A0A1W2PP64 1363 aa15.27■□□□□ 0.04
CHD3-216ENST00000573936 AKAP12Q02952 1782 aa15.27■□□□□ 0.04
CHD3-216ENST00000573936 COL14A1Q05707 1796 aaKnown RBP15.27■□□□□ 0.04
CHD3-216ENST00000573936 NLRP6P59044 892 aa15.27■□□□□ 0.04
CHD3-216ENST00000573936 KRT27Q7Z3Y8 459 aa15.27■□□□□ 0.04
CHD3-216ENST00000573936 NUTM2GQ5VZR2 741 aa15.26■□□□□ 0.03
CHD3-216ENST00000573936 FAM83GA6ND36 823 aa15.25■□□□□ 0.03
CHD3-216ENST00000573936 BAG6P46379 1132 aa15.25■□□□□ 0.03
CHD3-216ENST00000573936 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.25■□□□□ 0.03
CHD3-216ENST00000573936 MON2Q7Z3U7 1717 aa15.23■□□□□ 0.03
CHD3-216ENST00000573936 USP19O94966 1318 aa15.23■□□□□ 0.03
CHD3-216ENST00000573936 C11orf95C9JLR9 678 aaPredicted RBP15.23■□□□□ 0.03
CHD3-216ENST00000573936 BTG4Q9NY30 223 aa15.23■□□□□ 0.03
CHD3-216ENST00000573936 PHRF1Q9P1Y6 1649 aaKnown RBP15.23■□□□□ 0.03
CHD3-216ENST00000573936 ONECUT3O60422 494 aaPredicted RBP15.22■□□□□ 0.03
CHD3-216ENST00000573936 GCP02774 474 aa15.22■□□□□ 0.03
CHD3-216ENST00000573936 KCNH5Q8NCM2 988 aa15.22■□□□□ 0.03
CHD3-216ENST00000573936 NRKQ7Z2Y5 1582 aa15.22■□□□□ 0.03
CHD3-216ENST00000573936 USP31Q70CQ4 1352 aa15.22■□□□□ 0.03
CHD3-216ENST00000573936 FAM98CQ17RN3 349 aaKnown RBP15.21■□□□□ 0.03
CHD3-216ENST00000573936 KIF7Q2M1P5 1343 aa15.2■□□□□ 0.02
CHD3-216ENST00000573936 PSDA5PKW4 1024 aaPredicted RBP15.2■□□□□ 0.02
CHD3-216ENST00000573936 NME9Q86XW9 330 aa15.2■□□□□ 0.02
CHD3-216ENST00000573936 PRDM11Q9NQV5 511 aa15.2■□□□□ 0.02
CHD3-216ENST00000573936 ZC3H6P61129 1189 aaKnown RBP15.19■□□□□ 0.02
CHD3-216ENST00000573936 PIK3C2AO00443 1686 aa15.19■□□□□ 0.02
CHD3-216ENST00000573936 THSD7AQ9UPZ6 1657 aa15.19■□□□□ 0.02
CHD3-216ENST00000573936 COG3Q96JB2 828 aa15.18■□□□□ 0.02
CHD3-216ENST00000573936 PANK3Q9H999 370 aa15.18■□□□□ 0.02
CHD3-216ENST00000573936 CPDO75976 1380 aa15.18■□□□□ 0.02
CHD3-216ENST00000573936 KIAA0232Q92628 1395 aa15.18■□□□□ 0.02
CHD3-216ENST00000573936 MYOM1P52179 1685 aa15.18■□□□□ 0.02
CHD3-216ENST00000573936 SLIT3O75094 1523 aa15.17■□□□□ 0.02
CHD3-216ENST00000573936 CARD14Q9BXL6 1004 aa15.17■□□□□ 0.02
CHD3-216ENST00000573936 NSD3Q9BZ95 1437 aa15.17■□□□□ 0.02
CHD3-216ENST00000573936 SPATA31A5Q5VU36 1347 aa15.17■□□□□ 0.02
CHD3-216ENST00000573936 SPATA31A7Q8IWB4 1347 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms