RNA–Protein interactions for RNA: ENST00000573600.5

CTDNEP1-208, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CTDNEP1, Length 1,724 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-208ENST00000573600 NME9Q86XW9 330 aa38.58■■■■□ 3.77
CTDNEP1-208ENST00000573600 FKBP8Q14318 412 aa38.57■■■■□ 3.76
CTDNEP1-208ENST00000573600 COG3Q96JB2 828 aa38.57■■■■□ 3.76
CTDNEP1-208ENST00000573600 COL3A1P02461 1466 aaPredicted RBP38.56■■■■□ 3.76
CTDNEP1-208ENST00000573600 TTC21BQ7Z4L5 1316 aa38.56■■■■□ 3.76
CTDNEP1-208ENST00000573600 ADGRL3Q9HAR2 1447 aa38.56■■■■□ 3.76
CTDNEP1-208ENST00000573600 CCDC146Q8IYE0 955 aa38.55■■■■□ 3.76
CTDNEP1-208ENST00000573600 AATKQ6ZMQ8 1374 aa38.54■■■■□ 3.76
CTDNEP1-208ENST00000573600 PNPLA6Q8IY17 1366 aa38.54■■■■□ 3.76
CTDNEP1-208ENST00000573600 MAP2P11137 1827 aaKnown RBP38.54■■■■□ 3.76
CTDNEP1-208ENST00000573600 SSH2Q76I76 1423 aa38.52■■■■□ 3.76
CTDNEP1-208ENST00000573600 TTC21AQ8NDW8 1320 aa38.5■■■■□ 3.75
CTDNEP1-208ENST00000573600 NGDNQ8NEJ9 315 aaKnown RBP38.49■■■■□ 3.75
CTDNEP1-208ENST00000573600 KDM4FA0A1W2PPD8 638 aa38.49■■■■□ 3.75
CTDNEP1-208ENST00000573600 APAF1O14727 1248 aa38.49■■■■□ 3.75
CTDNEP1-208ENST00000573600 PMFBP1Q8TBY8 1022 aa38.49■■■■□ 3.75
CTDNEP1-208ENST00000573600 RUNDC1Q96C34 613 aa38.49■■■■□ 3.75
CTDNEP1-208ENST00000573600 POLKQ9UBT6 870 aa38.48■■■■□ 3.75
CTDNEP1-208ENST00000573600 ZNF521Q96K83 1311 aa38.47■■■■□ 3.75
CTDNEP1-208ENST00000573600 ZRANB1Q9UGI0 708 aa38.45■■■■□ 3.75
CTDNEP1-208ENST00000573600 DIAPH1O60610 1272 aaKnown RBP38.44■■■■□ 3.74
CTDNEP1-208ENST00000573600 OVOS2A0A0J9YW53 1432 aa38.44■■■■□ 3.74
CTDNEP1-208ENST00000573600 OVOS2Q6IE36 1432 aa38.44■■■■□ 3.74
CTDNEP1-208ENST00000573600 U2AF1L5P0DN76 240 aaPredicted RBP38.43■■■■□ 3.74
CTDNEP1-208ENST00000573600 U2AF1Q01081 240 aaKnown RBP eCLIP38.43■■■■□ 3.74
CTDNEP1-208ENST00000573600 CDCA7LQ96GN5 454 aa38.41■■■■□ 3.74
CTDNEP1-208ENST00000573600 CDK12Q9NYV4 1490 aaPredicted RBP38.41■■■■□ 3.74
CTDNEP1-208ENST00000573600 IQSEC2Q5JU85 1478 aa38.39■■■■□ 3.74
CTDNEP1-208ENST00000573600 GOLGA2Q08379 1002 aa38.38■■■■□ 3.74
CTDNEP1-208ENST00000573600 NCBP3Q53F19 620 aaKnown RBP38.38■■■■□ 3.73
CTDNEP1-208ENST00000573600 C14orf37Q86TY3 774 aa38.38■■■■□ 3.73
CTDNEP1-208ENST00000573600 PROSER2Q86WR7 435 aaPredicted RBP38.37■■■■□ 3.73
CTDNEP1-208ENST00000573600 U2SURPO15042 1029 aaKnown RBP38.36■■■■□ 3.73
CTDNEP1-208ENST00000573600 ERICH6BQ5W0A0 696 aa38.36■■■■□ 3.73
CTDNEP1-208ENST00000573600 RBM33Q96EV2 1170 aaKnown RBP38.36■■■■□ 3.73
CTDNEP1-208ENST00000573600 RNF123Q5XPI4 1314 aa38.36■■■■□ 3.73
CTDNEP1-208ENST00000573600 USP31Q70CQ4 1352 aa38.35■■■■□ 3.73
CTDNEP1-208ENST00000573600 PNNQ9H307 717 aaKnown RBP38.35■■■■□ 3.73
CTDNEP1-208ENST00000573600 PHF8Q9UPP1 1060 aa38.35■■■■□ 3.73
CTDNEP1-208ENST00000573600 LMTK3Q96Q04 1460 aa38.34■■■■□ 3.73
CTDNEP1-208ENST00000573600 PPM1GO15355 546 aaPredicted RBP38.34■■■■□ 3.73
CTDNEP1-208ENST00000573600 FBLN1P23142 703 aa38.34■■■■□ 3.73
CTDNEP1-208ENST00000573600 EMILIN1Q9Y6C2 1016 aa38.34■■■■□ 3.73
CTDNEP1-208ENST00000573600 HSPA2P54652 639 aa38.32■■■■□ 3.73
CTDNEP1-208ENST00000573600 TCP11L2Q8N4U5 519 aa38.32■■■■□ 3.73
CTDNEP1-208ENST00000573600 PIK3C2AO00443 1686 aa38.3■■■■□ 3.72
CTDNEP1-208ENST00000573600 USP54Q70EL1 1684 aa38.29■■■■□ 3.72
CTDNEP1-208ENST00000573600 RCAN3Q9UKA8 241 aa38.28■■■■□ 3.72
CTDNEP1-208ENST00000573600 NCOA3Q9Y6Q9 1424 aa38.28■■■■□ 3.72
CTDNEP1-208ENST00000573600 SLFN5Q08AF3 891 aa38.27■■■■□ 3.72
CTDNEP1-208ENST00000573600 RRS1Q15050 365 aaKnown RBP38.26■■■■□ 3.72
CTDNEP1-208ENST00000573600 CCDC27Q2M243 656 aa38.26■■■■□ 3.72
CTDNEP1-208ENST00000573600 PLEKHF1Q96S99 279 aa38.26■■■■□ 3.71
CTDNEP1-208ENST00000573600 STRCP1A6NGW2 1772 aa38.25■■■■□ 3.71
CTDNEP1-208ENST00000573600 DUSP27Q5VZP5 1158 aa38.25■■■■□ 3.71
CTDNEP1-208ENST00000573600 WWC1Q8IX03 1113 aa38.25■■■■□ 3.71
CTDNEP1-208ENST00000573600 LRRC7Q96NW7 1537 aa38.25■■■■□ 3.71
CTDNEP1-208ENST00000573600 C19orf44Q9H6X5 657 aa38.24■■■■□ 3.71
CTDNEP1-208ENST00000573600 FCHSD2O94868 740 aa38.24■■■■□ 3.71
CTDNEP1-208ENST00000573600 PHF23Q9BUL5 403 aaPredicted RBP38.24■■■■□ 3.71
CTDNEP1-208ENST00000573600 E9PSI1 815 aa38.23■■■■□ 3.71
CTDNEP1-208ENST00000573600 ESCO1Q5FWF5 840 aa38.23■■■■□ 3.71
CTDNEP1-208ENST00000573600 TRMT2AQ8IZ69 625 aaKnown RBP38.23■■■■□ 3.71
CTDNEP1-208ENST00000573600 MAPK8IP3Q9UPT6 1336 aa38.22■■■■□ 3.71
CTDNEP1-208ENST00000573600 IL13P35225 146 aa38.22■■■■□ 3.71
CTDNEP1-208ENST00000573600 IRX6P78412 446 aaPredicted RBP38.22■■■■□ 3.71
CTDNEP1-208ENST00000573600 STRCQ7RTU9 1775 aa38.22■■■■□ 3.71
CTDNEP1-208ENST00000573600 NEUROD2Q15784 382 aa38.18■■■■□ 3.7
CTDNEP1-208ENST00000573600 WDR63Q8IWG1 891 aa38.18■■■■□ 3.7
CTDNEP1-208ENST00000573600 RRP7AQ9Y3A4 280 aaKnown RBP38.18■■■■□ 3.7
CTDNEP1-208ENST00000573600 DCCP43146 1447 aa38.17■■■■□ 3.7
CTDNEP1-208ENST00000573600 TMEM94Q12767 1356 aa38.16■■■■□ 3.7
CTDNEP1-208ENST00000573600 NLRP6P59044 892 aa38.16■■■■□ 3.7
CTDNEP1-208ENST00000573600 MARF1Q9Y4F3 1742 aaKnown RBP38.16■■■■□ 3.7
CTDNEP1-208ENST00000573600 KIF1AQ12756 1690 aa38.16■■■■□ 3.7
CTDNEP1-208ENST00000573600 NEFMP07197 916 aa38.14■■■■□ 3.7
CTDNEP1-208ENST00000573600 ABTB2Q8N961 1025 aa38.14■■■■□ 3.7
CTDNEP1-208ENST00000573600 RSPH6AQ9H0K4 717 aa38.14■■■■□ 3.7
CTDNEP1-208ENST00000573600 PEAK1Q9H792 1746 aa38.13■■■■□ 3.69
CTDNEP1-208ENST00000573600 PSME1Q06323 249 aa38.13■■■■□ 3.69
CTDNEP1-208ENST00000573600 PAK3O75914 559 aaPredicted RBP38.12■■■■□ 3.69
CTDNEP1-208ENST00000573600 C1orf167Q5SNV9 1468 aa38.12■■■■□ 3.69
CTDNEP1-208ENST00000573600 TMPOP42166 694 aaKnown RBP38.12■■■■□ 3.69
CTDNEP1-208ENST00000573600 RRP1P56182 461 aaKnown RBP38.12■■■■□ 3.69
CTDNEP1-208ENST00000573600 SPINK5Q9NQ38 1064 aaPredicted RBP38.1■■■■□ 3.69
CTDNEP1-208ENST00000573600 SBNO1A3KN83 1393 aa38.09■■■■□ 3.69
CTDNEP1-208ENST00000573600 ATF3P18847 181 aa38.09■■■■□ 3.69
CTDNEP1-208ENST00000573600 AEBP2Q6ZN18 517 aaPredicted RBP38.09■■■■□ 3.69
CTDNEP1-208ENST00000573600 ORAI2Q96SN7 254 aa38.08■■■■□ 3.69
CTDNEP1-208ENST00000573600 PRKAR2BP31323 418 aa38.07■■■■□ 3.69
CTDNEP1-208ENST00000573600 KIF24Q5T7B8 1368 aa38.07■■■■□ 3.69
CTDNEP1-208ENST00000573600 DMRT2Q9Y5R5 561 aa38.07■■■■□ 3.69
CTDNEP1-208ENST00000573600 FLT4P35916 1363 aa38.07■■■■□ 3.68
CTDNEP1-208ENST00000573600 MAP3K19Q56UN5 1328 aa38.07■■■■□ 3.68
CTDNEP1-208ENST00000573600 EIF4A2Q14240 407 aaKnown RBP38.05■■■■□ 3.68
CTDNEP1-208ENST00000573600 PPP4R2Q9NY27 417 aa38.05■■■■□ 3.68
CTDNEP1-208ENST00000573600 SOX12O15370 315 aa38.04■■■■□ 3.68
CTDNEP1-208ENST00000573600 MST1RQ04912 1400 aa38.03■■■■□ 3.68
CTDNEP1-208ENST00000573600 HMOX1P09601 288 aa38.03■■■■□ 3.68
CTDNEP1-208ENST00000573600 CADPS2Q86UW7 1296 aa38.01■■■■□ 3.67
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms