RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CDCA8Q53HL2 280 aa12.96□□□□□ -0.33
VPS35-211ENST00000569950 KIF20BQ96Q89 1820 aa12.95□□□□□ -0.34
VPS35-211ENST00000569950 MED1Q15648 1581 aaPredicted RBP12.95□□□□□ -0.34
VPS35-211ENST00000569950 NPHP3Q7Z494 1330 aa12.95□□□□□ -0.34
VPS35-211ENST00000569950 SBNO1A3KN83 1393 aa12.94□□□□□ -0.34
VPS35-211ENST00000569950 KRT28Q7Z3Y7 464 aa12.94□□□□□ -0.34
VPS35-211ENST00000569950 PHRF1Q9P1Y6 1649 aaKnown RBP12.94□□□□□ -0.34
VPS35-211ENST00000569950 TNS3Q68CZ2 1445 aa12.94□□□□□ -0.34
VPS35-211ENST00000569950 EDC4Q6P2E9 1401 aaKnown RBP12.94□□□□□ -0.34
VPS35-211ENST00000569950 ANKRD26Q9UPS8 1709 aa12.93□□□□□ -0.34
VPS35-211ENST00000569950 SPATA31A3Q5VYP0 1347 aa12.93□□□□□ -0.34
VPS35-211ENST00000569950 PER1O15534 1290 aaPredicted RBP12.93□□□□□ -0.34
VPS35-211ENST00000569950 TMC1Q8TDI8 760 aa12.93□□□□□ -0.34
VPS35-211ENST00000569950 KTN1Q86UP2 1357 aaKnown RBP12.93□□□□□ -0.34
VPS35-211ENST00000569950 PNPLA6Q8IY17 1366 aa12.93□□□□□ -0.34
VPS35-211ENST00000569950 SCAF1Q9H7N4 1312 aaKnown RBP12.92□□□□□ -0.34
VPS35-211ENST00000569950 NGDNQ8NEJ9 315 aaKnown RBP12.92□□□□□ -0.34
VPS35-211ENST00000569950 BRD4O60885 1362 aaPredicted RBP12.92□□□□□ -0.34
VPS35-211ENST00000569950 TTC21BQ7Z4L5 1316 aa12.91□□□□□ -0.34
VPS35-211ENST00000569950 PANK3Q9H999 370 aa12.91□□□□□ -0.34
VPS35-211ENST00000569950 SLIT3O75094 1523 aa12.91□□□□□ -0.34
VPS35-211ENST00000569950 OVOS2A0A0J9YW53 1432 aa12.9□□□□□ -0.34
VPS35-211ENST00000569950 OVOS2Q6IE36 1432 aa12.9□□□□□ -0.34
VPS35-211ENST00000569950 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
VPS35-211ENST00000569950 ZNF316A6NFI3 1004 aaPredicted RBP12.9□□□□□ -0.34
VPS35-211ENST00000569950 ZNF692Q9BU19 519 aaPredicted RBP12.9□□□□□ -0.34
VPS35-211ENST00000569950 LRP6O75581 1613 aa12.89□□□□□ -0.35
VPS35-211ENST00000569950 PSME1Q06323 249 aa12.89□□□□□ -0.35
VPS35-211ENST00000569950 ILDR1Q86SU0 546 aaPredicted RBP12.89□□□□□ -0.35
VPS35-211ENST00000569950 POLR3GLQ9BT43 218 aa12.89□□□□□ -0.35
VPS35-211ENST00000569950 TERF2IPQ9NYB0 399 aa12.89□□□□□ -0.35
VPS35-211ENST00000569950 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
VPS35-211ENST00000569950 USP31Q70CQ4 1352 aa12.89□□□□□ -0.35
VPS35-211ENST00000569950 USP19O94966 1318 aa12.88□□□□□ -0.35
VPS35-211ENST00000569950 NFAT5O94916 1531 aa12.88□□□□□ -0.35
VPS35-211ENST00000569950 NME9Q86XW9 330 aa12.88□□□□□ -0.35
VPS35-211ENST00000569950 FYB1O15117 783 aa12.87□□□□□ -0.35
VPS35-211ENST00000569950 HDGFL2Q7Z4V5 671 aaPredicted RBP12.87□□□□□ -0.35
VPS35-211ENST00000569950 TTC21AQ8NDW8 1320 aa12.87□□□□□ -0.35
VPS35-211ENST00000569950 COL18A1P39060 1754 aa12.86□□□□□ -0.35
VPS35-211ENST00000569950 JCADQ9P266 1359 aa12.86□□□□□ -0.35
VPS35-211ENST00000569950 AMER1Q5JTC6 1135 aaPredicted RBP12.86□□□□□ -0.35
VPS35-211ENST00000569950 LRRC59Q96AG4 307 aaKnown RBP12.86□□□□□ -0.35
VPS35-211ENST00000569950 ARHGEF10O15013 1369 aa12.85□□□□□ -0.35
VPS35-211ENST00000569950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS35-211ENST00000569950 LTN1O94822 1766 aa12.84□□□□□ -0.35
VPS35-211ENST00000569950 NUTM2GQ5VZR2 741 aa12.84□□□□□ -0.35
VPS35-211ENST00000569950 CABLES1Q8TDN4 633 aa12.84□□□□□ -0.35
VPS35-211ENST00000569950 PEAK1Q9H792 1746 aa12.84□□□□□ -0.35
VPS35-211ENST00000569950 LMO7Q8WWI1 1683 aa12.83□□□□□ -0.35
VPS35-211ENST00000569950 NPC1L1Q9UHC9 1359 aa12.83□□□□□ -0.36
VPS35-211ENST00000569950 DDX10Q13206 875 aaKnown RBP12.83□□□□□ -0.36
VPS35-211ENST00000569950 MAP2P11137 1827 aaKnown RBP12.83□□□□□ -0.36
VPS35-211ENST00000569950 RGPD5Q99666 1765 aa12.82□□□□□ -0.36
VPS35-211ENST00000569950 PAK3O75914 559 aaPredicted RBP12.82□□□□□ -0.36
VPS35-211ENST00000569950 ABTB2Q8N961 1025 aa12.82□□□□□ -0.36
VPS35-211ENST00000569950 PLCH1Q4KWH8 1693 aa12.81□□□□□ -0.36
VPS35-211ENST00000569950 GGNBP2Q9H3C7 697 aa12.81□□□□□ -0.36
VPS35-211ENST00000569950 NRAPQ86VF7 1730 aa12.8□□□□□ -0.36
VPS35-211ENST00000569950 FBLN1P23142 703 aa12.8□□□□□ -0.36
VPS35-211ENST00000569950 CGNL1Q0VF96 1302 aa12.8□□□□□ -0.36
VPS35-211ENST00000569950 NSD2O96028 1365 aa12.8□□□□□ -0.36
VPS35-211ENST00000569950 NLRP6P59044 892 aa12.79□□□□□ -0.36
VPS35-211ENST00000569950 SPATA31A6Q5VVP1 1343 aa12.79□□□□□ -0.36
VPS35-211ENST00000569950 CPDO75976 1380 aa12.79□□□□□ -0.36
VPS35-211ENST00000569950 GCP02774 474 aa12.78□□□□□ -0.36
VPS35-211ENST00000569950 LMOD2Q6P5Q4 547 aa12.78□□□□□ -0.36
VPS35-211ENST00000569950 NLRP13Q86W25 1043 aa12.78□□□□□ -0.36
VPS35-211ENST00000569950 COL14A1Q05707 1796 aaKnown RBP12.78□□□□□ -0.36
VPS35-211ENST00000569950 SMG6Q86US8 1419 aaKnown RBP12.78□□□□□ -0.36
VPS35-211ENST00000569950 NWD2Q9ULI1 1742 aa12.77□□□□□ -0.36
VPS35-211ENST00000569950 KNSTRNQ9Y448 316 aa12.77□□□□□ -0.37
VPS35-211ENST00000569950 PARD3Q8TEW0 1356 aa12.77□□□□□ -0.37
VPS35-211ENST00000569950 SLIT2O94813 1529 aa12.77□□□□□ -0.37
VPS35-211ENST00000569950 CAMTA1Q9Y6Y1 1673 aa12.77□□□□□ -0.37
VPS35-211ENST00000569950 AATKQ6ZMQ8 1374 aa12.76□□□□□ -0.37
VPS35-211ENST00000569950 KIAA0232Q92628 1395 aa12.76□□□□□ -0.37
VPS35-211ENST00000569950 ABCC6O95255 1503 aa12.76□□□□□ -0.37
VPS35-211ENST00000569950 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.76□□□□□ -0.37
VPS35-211ENST00000569950 RGPD2P0DJD1 1756 aa12.75□□□□□ -0.37
VPS35-211ENST00000569950 ARHGEF25Q86VW2 580 aa12.75□□□□□ -0.37
VPS35-211ENST00000569950 PLEKHG5O94827 1062 aa12.74□□□□□ -0.37
VPS35-211ENST00000569950 CC2D1BQ5T0F9 858 aaKnown RBP12.74□□□□□ -0.37
VPS35-211ENST00000569950 COG3Q96JB2 828 aa12.74□□□□□ -0.37
VPS35-211ENST00000569950 COL3A1P02461 1466 aaPredicted RBP12.73□□□□□ -0.37
VPS35-211ENST00000569950 BCL9LQ86UU0 1499 aa12.73□□□□□ -0.37
VPS35-211ENST00000569950 MAP3K19Q56UN5 1328 aa12.73□□□□□ -0.37
VPS35-211ENST00000569950 FAM83GA6ND36 823 aa12.73□□□□□ -0.37
VPS35-211ENST00000569950 NUTM2BA6NNL0 878 aaPredicted RBP12.73□□□□□ -0.37
VPS35-211ENST00000569950 NUTM2EB1AL46 878 aaPredicted RBP12.73□□□□□ -0.37
VPS35-211ENST00000569950 NUTM2AQ8IVF1 878 aaPredicted RBP12.73□□□□□ -0.37
VPS35-211ENST00000569950 ZC3H6P61129 1189 aaKnown RBP12.72□□□□□ -0.37
VPS35-211ENST00000569950 POLKQ9UBT6 870 aa12.72□□□□□ -0.37
VPS35-211ENST00000569950 AXIN2Q9Y2T1 843 aa12.72□□□□□ -0.37
VPS35-211ENST00000569950 RGPD1P0DJD0 1748 aa12.71□□□□□ -0.37
VPS35-211ENST00000569950 SOX12O15370 315 aa12.71□□□□□ -0.37
VPS35-211ENST00000569950 ADAMTS2O95450 1211 aa12.71□□□□□ -0.37
VPS35-211ENST00000569950 RRS1Q15050 365 aaKnown RBP12.71□□□□□ -0.37
VPS35-211ENST00000569950 CHRNA2Q15822 529 aa12.71□□□□□ -0.37
VPS35-211ENST00000569950 KCNH5Q8NCM2 988 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms