RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 CCDC7Q96M83 1385 aa12.59□□□□□ -0.39
CHD9-219ENST00000569225 SPATA31A6Q5VVP1 1343 aa12.59□□□□□ -0.39
CHD9-219ENST00000569225 TTC21AQ8NDW8 1320 aa12.59□□□□□ -0.39
CHD9-219ENST00000569225 PNPLA6Q8IY17 1366 aa12.59□□□□□ -0.39
CHD9-219ENST00000569225 CD163L1Q9NR16 1453 aa12.58□□□□□ -0.39
CHD9-219ENST00000569225 EDC4Q6P2E9 1401 aaKnown RBP12.58□□□□□ -0.4
CHD9-219ENST00000569225 WASHC2AQ641Q2 1341 aa12.58□□□□□ -0.4
CHD9-219ENST00000569225 TTC21BQ7Z4L5 1316 aa12.58□□□□□ -0.4
CHD9-219ENST00000569225 ABTB2Q8N961 1025 aa12.57□□□□□ -0.4
CHD9-219ENST00000569225 SSH2Q76I76 1423 aa12.57□□□□□ -0.4
CHD9-219ENST00000569225 HAP1P54257 671 aaPredicted RBP12.55□□□□□ -0.4
CHD9-219ENST00000569225 NLRP13Q86W25 1043 aa12.55□□□□□ -0.4
CHD9-219ENST00000569225 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.55□□□□□ -0.4
CHD9-219ENST00000569225 PANK3Q9H999 370 aa12.55□□□□□ -0.4
CHD9-219ENST00000569225 TRPM3Q9HCF6 1732 aaPredicted RBP12.55□□□□□ -0.4
CHD9-219ENST00000569225 SHPRHQ149N8 1683 aa12.54□□□□□ -0.4
CHD9-219ENST00000569225 NLRP6P59044 892 aa12.54□□□□□ -0.4
CHD9-219ENST00000569225 NSD3Q9BZ95 1437 aa12.53□□□□□ -0.4
CHD9-219ENST00000569225 NUTM2BA6NNL0 878 aaPredicted RBP12.53□□□□□ -0.4
CHD9-219ENST00000569225 NUTM2EB1AL46 878 aaPredicted RBP12.53□□□□□ -0.4
CHD9-219ENST00000569225 NUTM2AQ8IVF1 878 aaPredicted RBP12.53□□□□□ -0.4
CHD9-219ENST00000569225 MYOM1P52179 1685 aa12.53□□□□□ -0.4
CHD9-219ENST00000569225 AKAP12Q02952 1782 aa12.53□□□□□ -0.4
CHD9-219ENST00000569225 NUTM2GQ5VZR2 741 aa12.53□□□□□ -0.4
CHD9-219ENST00000569225 CARD14Q9BXL6 1004 aa12.53□□□□□ -0.4
CHD9-219ENST00000569225 CGNL1Q0VF96 1302 aa12.52□□□□□ -0.4
CHD9-219ENST00000569225 COL22A1Q8NFW1 1626 aaPredicted RBP12.52□□□□□ -0.4
CHD9-219ENST00000569225 MON2Q7Z3U7 1717 aa12.52□□□□□ -0.41
CHD9-219ENST00000569225 PLEKHG5O94827 1062 aa12.52□□□□□ -0.41
CHD9-219ENST00000569225 MEX3CQ5U5Q3 659 aaKnown RBP12.52□□□□□ -0.41
CHD9-219ENST00000569225 NME9Q86XW9 330 aa12.52□□□□□ -0.41
CHD9-219ENST00000569225 KNSTRNQ9Y448 316 aa12.52□□□□□ -0.41
CHD9-219ENST00000569225 MED1Q15648 1581 aaPredicted RBP12.51□□□□□ -0.41
CHD9-219ENST00000569225 NRKQ7Z2Y5 1582 aa12.51□□□□□ -0.41
CHD9-219ENST00000569225 USP19O94966 1318 aa12.51□□□□□ -0.41
CHD9-219ENST00000569225 ALS2Q96Q42 1657 aa12.51□□□□□ -0.41
CHD9-219ENST00000569225 USP31Q70CQ4 1352 aa12.51□□□□□ -0.41
CHD9-219ENST00000569225 CABLES1Q8TDN4 633 aa12.51□□□□□ -0.41
CHD9-219ENST00000569225 COG3Q96JB2 828 aa12.51□□□□□ -0.41
CHD9-219ENST00000569225 ZNF316A6NFI3 1004 aaPredicted RBP12.5□□□□□ -0.41
CHD9-219ENST00000569225 KCNH5Q8NCM2 988 aa12.5□□□□□ -0.41
CHD9-219ENST00000569225 ADAMTS2O95450 1211 aa12.49□□□□□ -0.41
CHD9-219ENST00000569225 FYB1O15117 783 aa12.48□□□□□ -0.41
CHD9-219ENST00000569225 NSD2O96028 1365 aa12.48□□□□□ -0.41
CHD9-219ENST00000569225 GCP02774 474 aa12.48□□□□□ -0.41
CHD9-219ENST00000569225 PIK3C2AO00443 1686 aa12.47□□□□□ -0.41
CHD9-219ENST00000569225 LRP6O75581 1613 aa12.47□□□□□ -0.41
CHD9-219ENST00000569225 GGNBP2Q9H3C7 697 aa12.47□□□□□ -0.41
CHD9-219ENST00000569225 OVOS2A0A0J9YW53 1432 aa12.47□□□□□ -0.41
CHD9-219ENST00000569225 OVOS2Q6IE36 1432 aa12.47□□□□□ -0.41
CHD9-219ENST00000569225 PRDM11Q9NQV5 511 aa12.46□□□□□ -0.41
CHD9-219ENST00000569225 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.41
CHD9-219ENST00000569225 SLIT3O75094 1523 aa12.46□□□□□ -0.41
CHD9-219ENST00000569225 NGLY1Q96IV0 654 aa12.46□□□□□ -0.42
CHD9-219ENST00000569225 C8orf37Q96NL8 207 aa12.46□□□□□ -0.42
CHD9-219ENST00000569225 PHF23Q9BUL5 403 aaPredicted RBP12.46□□□□□ -0.42
CHD9-219ENST00000569225 CPDO75976 1380 aa12.45□□□□□ -0.42
CHD9-219ENST00000569225 SOX12O15370 315 aa12.45□□□□□ -0.42
CHD9-219ENST00000569225 KIAA0232Q92628 1395 aa12.45□□□□□ -0.42
CHD9-219ENST00000569225 PER1O15534 1290 aaPredicted RBP12.44□□□□□ -0.42
CHD9-219ENST00000569225 ZC3H6P61129 1189 aaKnown RBP12.44□□□□□ -0.42
CHD9-219ENST00000569225 DDX10Q13206 875 aaKnown RBP12.44□□□□□ -0.42
CHD9-219ENST00000569225 AMER1Q5JTC6 1135 aaPredicted RBP12.44□□□□□ -0.42
CHD9-219ENST00000569225 NPC1L1Q9UHC9 1359 aa12.43□□□□□ -0.42
CHD9-219ENST00000569225 MORC1Q86VD1 984 aa12.43□□□□□ -0.42
CHD9-219ENST00000569225 USP54Q70EL1 1684 aa12.43□□□□□ -0.42
CHD9-219ENST00000569225 PHRF1Q9P1Y6 1649 aaKnown RBP12.43□□□□□ -0.42
CHD9-219ENST00000569225 ZBTB7CA1YPR0 619 aa12.42□□□□□ -0.42
CHD9-219ENST00000569225 FAM83GA6ND36 823 aa12.42□□□□□ -0.42
CHD9-219ENST00000569225 ABCA3Q99758 1704 aa12.42□□□□□ -0.42
CHD9-219ENST00000569225 ZNF772Q68DY9 489 aaPredicted RBP12.42□□□□□ -0.42
CHD9-219ENST00000569225 ARHGEF25Q86VW2 580 aa12.42□□□□□ -0.42
CHD9-219ENST00000569225 FNBP4Q8N3X1 1017 aaPredicted RBP12.42□□□□□ -0.42
CHD9-219ENST00000569225 AFF2P51816 1311 aa12.41□□□□□ -0.42
CHD9-219ENST00000569225 NFAT5O94916 1531 aa12.41□□□□□ -0.42
CHD9-219ENST00000569225 CRYBG1Q9Y4K1 1723 aa12.41□□□□□ -0.42
CHD9-219ENST00000569225 AATKQ6ZMQ8 1374 aa12.41□□□□□ -0.42
CHD9-219ENST00000569225 CHRNA2Q15822 529 aa12.4□□□□□ -0.42
CHD9-219ENST00000569225 CC2D1BQ5T0F9 858 aaKnown RBP12.4□□□□□ -0.42
CHD9-219ENST00000569225 USP21Q9UK80 565 aa12.4□□□□□ -0.42
CHD9-219ENST00000569225 KIF20BQ96Q89 1820 aa12.4□□□□□ -0.42
CHD9-219ENST00000569225 BTG4Q9NY30 223 aa12.4□□□□□ -0.42
CHD9-219ENST00000569225 AMPHP49418 695 aa12.39□□□□□ -0.43
CHD9-219ENST00000569225 UNC5CLQ8IV45 518 aa12.39□□□□□ -0.43
CHD9-219ENST00000569225 RTL1A6NKG5 1358 aa12.38□□□□□ -0.43
CHD9-219ENST00000569225 TNNT2P45379 298 aaPredicted RBP12.38□□□□□ -0.43
CHD9-219ENST00000569225 SLIT2O94813 1529 aa12.38□□□□□ -0.43
CHD9-219ENST00000569225 ABCC6O95255 1503 aa12.38□□□□□ -0.43
CHD9-219ENST00000569225 COL14A1Q05707 1796 aaKnown RBP12.38□□□□□ -0.43
CHD9-219ENST00000569225 MAP3K19Q56UN5 1328 aa12.38□□□□□ -0.43
CHD9-219ENST00000569225 MARF1Q9Y4F3 1742 aaKnown RBP12.38□□□□□ -0.43
CHD9-219ENST00000569225 KIF24Q5T7B8 1368 aa12.38□□□□□ -0.43
CHD9-219ENST00000569225 EVA1CP58658 441 aa12.38□□□□□ -0.43
CHD9-219ENST00000569225 CNGB1Q14028 1251 aaPredicted RBP12.37□□□□□ -0.43
CHD9-219ENST00000569225 RRS1Q15050 365 aaKnown RBP12.37□□□□□ -0.43
CHD9-219ENST00000569225 TRPC5Q9UL62 973 aaPredicted RBP12.37□□□□□ -0.43
CHD9-219ENST00000569225 IP6K1Q92551 441 aa12.36□□□□□ -0.43
CHD9-219ENST00000569225 BCL9LQ86UU0 1499 aa12.36□□□□□ -0.43
CHD9-219ENST00000569225 BLMP54132 1417 aaPredicted RBP12.36□□□□□ -0.43
CHD9-219ENST00000569225 FLT4P35916 1363 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms