RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 NUTM2BA6NNL0 878 aaPredicted RBP30.49■■■□□ 2.47
CLN3-234ENST00000568472 NUTM2EB1AL46 878 aaPredicted RBP30.49■■■□□ 2.47
CLN3-234ENST00000568472 NUTM2AQ8IVF1 878 aaPredicted RBP30.49■■■□□ 2.47
CLN3-234ENST00000568472 TTC21AQ8NDW8 1320 aa30.48■■■□□ 2.47
CLN3-234ENST00000568472 ABTB2Q8N961 1025 aa30.48■■■□□ 2.47
CLN3-234ENST00000568472 CD163L1Q9NR16 1453 aa30.47■■■□□ 2.47
CLN3-234ENST00000568472 ANKRD36BQ8N2N9 1353 aa30.47■■■□□ 2.47
CLN3-234ENST00000568472 TTC21BQ7Z4L5 1316 aa30.47■■■□□ 2.47
CLN3-234ENST00000568472 A0A1W2PP64 1363 aa30.45■■■□□ 2.47
CLN3-234ENST00000568472 MEX3CQ5U5Q3 659 aaKnown RBP30.45■■■□□ 2.47
CLN3-234ENST00000568472 ALS2Q96Q42 1657 aa30.44■■■□□ 2.46
CLN3-234ENST00000568472 NLRP13Q86W25 1043 aa30.44■■■□□ 2.46
CLN3-234ENST00000568472 HAP1P54257 671 aaPredicted RBP30.43■■■□□ 2.46
CLN3-234ENST00000568472 MED1Q15648 1581 aaPredicted RBP30.43■■■□□ 2.46
CLN3-234ENST00000568472 EDC4Q6P2E9 1401 aaKnown RBP30.43■■■□□ 2.46
CLN3-234ENST00000568472 POLR3GLQ9BT43 218 aa30.43■■■□□ 2.46
CLN3-234ENST00000568472 AKAP12Q02952 1782 aa30.42■■■□□ 2.46
CLN3-234ENST00000568472 C11orf95C9JLR9 678 aaPredicted RBP30.42■■■□□ 2.46
CLN3-234ENST00000568472 LRP6O75581 1613 aa30.4■■■□□ 2.46
CLN3-234ENST00000568472 NLRP6P59044 892 aa30.39■■■□□ 2.46
CLN3-234ENST00000568472 ADAMTS2O95450 1211 aa30.38■■■□□ 2.45
CLN3-234ENST00000568472 CABLES1Q8TDN4 633 aa30.38■■■□□ 2.45
CLN3-234ENST00000568472 KIF7Q2M1P5 1343 aa30.38■■■□□ 2.45
CLN3-234ENST00000568472 MON2Q7Z3U7 1717 aa30.37■■■□□ 2.45
CLN3-234ENST00000568472 PHF23Q9BUL5 403 aaPredicted RBP30.37■■■□□ 2.45
CLN3-234ENST00000568472 NUTM2GQ5VZR2 741 aa30.36■■■□□ 2.45
CLN3-234ENST00000568472 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.36■■■□□ 2.45
CLN3-234ENST00000568472 USP19O94966 1318 aa30.35■■■□□ 2.45
CLN3-234ENST00000568472 NRKQ7Z2Y5 1582 aa30.32■■■□□ 2.45
CLN3-234ENST00000568472 USP31Q70CQ4 1352 aa30.32■■■□□ 2.44
CLN3-234ENST00000568472 PLEKHG5O94827 1062 aa30.32■■■□□ 2.44
CLN3-234ENST00000568472 NGLY1Q96IV0 654 aa30.32■■■□□ 2.44
CLN3-234ENST00000568472 C8orf37Q96NL8 207 aa30.32■■■□□ 2.44
CLN3-234ENST00000568472 CCDC7Q96M83 1385 aa30.3■■■□□ 2.44
CLN3-234ENST00000568472 GCP02774 474 aa30.3■■■□□ 2.44
CLN3-234ENST00000568472 KCNH5Q8NCM2 988 aa30.3■■■□□ 2.44
CLN3-234ENST00000568472 MYOM1P52179 1685 aa30.3■■■□□ 2.44
CLN3-234ENST00000568472 CARD14Q9BXL6 1004 aa30.29■■■□□ 2.44
CLN3-234ENST00000568472 ZNF772Q68DY9 489 aaPredicted RBP30.28■■■□□ 2.44
CLN3-234ENST00000568472 NME9Q86XW9 330 aa30.28■■■□□ 2.44
CLN3-234ENST00000568472 FNBP4Q8N3X1 1017 aaPredicted RBP30.28■■■□□ 2.44
CLN3-234ENST00000568472 WASHC2AQ641Q2 1341 aa30.27■■■□□ 2.44
CLN3-234ENST00000568472 PANK3Q9H999 370 aa30.27■■■□□ 2.44
CLN3-234ENST00000568472 PIK3C2AO00443 1686 aa30.27■■■□□ 2.44
CLN3-234ENST00000568472 AFF2P51816 1311 aa30.24■■■□□ 2.43
CLN3-234ENST00000568472 CGNL1Q0VF96 1302 aa30.23■■■□□ 2.43
CLN3-234ENST00000568472 NSD3Q9BZ95 1437 aa30.23■■■□□ 2.43
CLN3-234ENST00000568472 FYB1O15117 783 aa30.23■■■□□ 2.43
CLN3-234ENST00000568472 COG3Q96JB2 828 aa30.23■■■□□ 2.43
CLN3-234ENST00000568472 PRDM11Q9NQV5 511 aa30.23■■■□□ 2.43
CLN3-234ENST00000568472 CPDO75976 1380 aa30.23■■■□□ 2.43
CLN3-234ENST00000568472 SLIT3O75094 1523 aa30.22■■■□□ 2.43
CLN3-234ENST00000568472 ABCA3Q99758 1704 aa30.22■■■□□ 2.43
CLN3-234ENST00000568472 FAM83GA6ND36 823 aa30.22■■■□□ 2.43
CLN3-234ENST00000568472 CRYBG1Q9Y4K1 1723 aa30.22■■■□□ 2.43
CLN3-234ENST00000568472 KIAA0232Q92628 1395 aa30.2■■■□□ 2.43
CLN3-234ENST00000568472 ZC3H6P61129 1189 aaKnown RBP30.2■■■□□ 2.43
CLN3-234ENST00000568472 RGS17Q9UGC6 210 aaPredicted RBP30.2■■■□□ 2.43
CLN3-234ENST00000568472 ZRANB1Q9UGI0 708 aa30.2■■■□□ 2.43
CLN3-234ENST00000568472 PHRF1Q9P1Y6 1649 aaKnown RBP30.19■■■□□ 2.42
CLN3-234ENST00000568472 USP21Q9UK80 565 aa30.19■■■□□ 2.42
CLN3-234ENST00000568472 OVOS2A0A0J9YW53 1432 aa30.19■■■□□ 2.42
CLN3-234ENST00000568472 OVOS2Q6IE36 1432 aa30.19■■■□□ 2.42
CLN3-234ENST00000568472 MARF1Q9Y4F3 1742 aaKnown RBP30.19■■■□□ 2.42
CLN3-234ENST00000568472 KNSTRNQ9Y448 316 aa30.17■■■□□ 2.42
CLN3-234ENST00000568472 USP54Q70EL1 1684 aa30.17■■■□□ 2.42
CLN3-234ENST00000568472 SLIT2O94813 1529 aa30.16■■■□□ 2.42
CLN3-234ENST00000568472 UNC5CLQ8IV45 518 aa30.15■■■□□ 2.42
CLN3-234ENST00000568472 GGNBP2Q9H3C7 697 aa30.15■■■□□ 2.42
CLN3-234ENST00000568472 ARHGEF25Q86VW2 580 aa30.14■■■□□ 2.42
CLN3-234ENST00000568472 TRPC5Q9UL62 973 aaPredicted RBP30.13■■■□□ 2.41
CLN3-234ENST00000568472 BCL9LQ86UU0 1499 aa30.12■■■□□ 2.41
CLN3-234ENST00000568472 QTRT2Q9H974 415 aaKnown RBP30.12■■■□□ 2.41
CLN3-234ENST00000568472 BTG4Q9NY30 223 aa30.12■■■□□ 2.41
CLN3-234ENST00000568472 COL14A1Q05707 1796 aaKnown RBP30.12■■■□□ 2.41
CLN3-234ENST00000568472 NSD2O96028 1365 aa30.12■■■□□ 2.41
CLN3-234ENST00000568472 AATKQ6ZMQ8 1374 aa30.12■■■□□ 2.41
CLN3-234ENST00000568472 SOX12O15370 315 aa30.1■■■□□ 2.41
CLN3-234ENST00000568472 CHRNA2Q15822 529 aa30.1■■■□□ 2.41
CLN3-234ENST00000568472 NFAT5O94916 1531 aa30.09■■■□□ 2.41
CLN3-234ENST00000568472 PER1O15534 1290 aaPredicted RBP30.08■■■□□ 2.41
CLN3-234ENST00000568472 POTEAQ6S8J7 498 aa30.08■■■□□ 2.41
CLN3-234ENST00000568472 NWD2Q9ULI1 1742 aa30.06■■■□□ 2.4
CLN3-234ENST00000568472 ZBTB7CA1YPR0 619 aa30.05■■■□□ 2.4
CLN3-234ENST00000568472 VPS72Q15906 364 aa30.05■■■□□ 2.4
CLN3-234ENST00000568472 ATRNO75882 1429 aa30.05■■■□□ 2.4
CLN3-234ENST00000568472 RXRBP28702 533 aa30.04■■■□□ 2.4
CLN3-234ENST00000568472 EVA1CP58658 441 aa30.04■■■□□ 2.4
CLN3-234ENST00000568472 KIF20BQ96Q89 1820 aa30.03■■■□□ 2.4
CLN3-234ENST00000568472 RBM6P78332 1123 aaKnown RBP30.03■■■□□ 2.4
CLN3-234ENST00000568472 AMER1Q5JTC6 1135 aaPredicted RBP30.03■■■□□ 2.4
CLN3-234ENST00000568472 ABCC6O95255 1503 aa30.02■■■□□ 2.4
CLN3-234ENST00000568472 PLCH1Q4KWH8 1693 aa30.01■■■□□ 2.4
CLN3-234ENST00000568472 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.01■■■□□ 2.39
CLN3-234ENST00000568472 NPC1L1Q9UHC9 1359 aa30.01■■■□□ 2.39
CLN3-234ENST00000568472 GJD4Q96KN9 370 aaPredicted RBP30■■■□□ 2.39
CLN3-234ENST00000568472 LMO7Q8WWI1 1683 aa29.98■■■□□ 2.39
CLN3-234ENST00000568472 CAMTA1Q9Y6Y1 1673 aa29.98■■■□□ 2.39
CLN3-234ENST00000568472 MORC1Q86VD1 984 aa29.98■■■□□ 2.39
CLN3-234ENST00000568472 IP6K1Q92551 441 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms