RNA–Protein interactions for RNA: ENST00000566279.5

TCF4-231, Transcript of transcription factor 4, human

TSL 5 BASIC

Gene TCF4, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-231	ENST00000566279	COL16A1	Q07092	1604 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-231	ENST00000566279	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-231	ENST00000566279	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.66	□□□□□ -0.22
TCF4-231	ENST00000566279	SLC12A5	Q9H2X9	1139 aa		13.65	□□□□□ -0.22
TCF4-231	ENST00000566279	NEFL	P07196	543 aa		13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	KNSTRN	Q9Y448	316 aa		13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	ACE	P12821	1306 aa		13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	PXDN	Q92626	1479 aa		13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	PLEKHG5	O94827	1062 aa		13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	NGDN	Q8NEJ9	315 aa	Known RBP	13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	NPC1L1	Q9UHC9	1359 aa		13.64	□□□□□ -0.23
TCF4-231	ENST00000566279	ATAD2	Q6PL18	1390 aa		13.63	□□□□□ -0.23
TCF4-231	ENST00000566279	CD163L1	Q9NR16	1453 aa		13.62	□□□□□ -0.23
TCF4-231	ENST00000566279	AKAP12	Q02952	1782 aa		13.62	□□□□□ -0.23
TCF4-231	ENST00000566279	NPHP3	Q7Z494	1330 aa		13.62	□□□□□ -0.23
TCF4-231	ENST00000566279	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.62	□□□□□ -0.23
TCF4-231	ENST00000566279	PSME1	Q06323	249 aa		13.61	□□□□□ -0.23
TCF4-231	ENST00000566279	KRT28	Q7Z3Y7	464 aa		13.61	□□□□□ -0.23
TCF4-231	ENST00000566279	PLEKHG3	A1L390	1219 aa		13.61	□□□□□ -0.23
TCF4-231	ENST00000566279	SMG6	Q86US8	1419 aa	Known RBP	13.6	□□□□□ -0.23
TCF4-231	ENST00000566279	POLR3A	O14802	1390 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-231	ENST00000566279	SOS2	Q07890	1332 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-231	ENST00000566279		A0A1W2PP64	1363 aa		13.6	□□□□□ -0.23
TCF4-231	ENST00000566279	PAK3	O75914	559 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-231	ENST00000566279	MON2	Q7Z3U7	1717 aa		13.59	□□□□□ -0.23
TCF4-231	ENST00000566279	INSR	P06213	1382 aa		13.59	□□□□□ -0.23
TCF4-231	ENST00000566279	LMOD2	Q6P5Q4	547 aa		13.59	□□□□□ -0.23
TCF4-231	ENST00000566279	CARD14	Q9BXL6	1004 aa		13.59	□□□□□ -0.23
TCF4-231	ENST00000566279	NRK	Q7Z2Y5	1582 aa		13.59	□□□□□ -0.23
TCF4-231	ENST00000566279	PPP2R1A	P30153	589 aa		13.58	□□□□□ -0.23
TCF4-231	ENST00000566279	NUTM2G	Q5VZR2	741 aa		13.58	□□□□□ -0.23
TCF4-231	ENST00000566279	BLM	P54132	1417 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-231	ENST00000566279	USP6	P35125	1406 aa		13.58	□□□□□ -0.24
TCF4-231	ENST00000566279	CPSF1	Q10570	1443 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-231	ENST00000566279	ALS2	Q96Q42	1657 aa		13.57	□□□□□ -0.24
TCF4-231	ENST00000566279	SENP3-EIF4A1	A0A087X0R7	540 aa		13.56	□□□□□ -0.24
TCF4-231	ENST00000566279	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
TCF4-231	ENST00000566279	TNS3	Q68CZ2	1445 aa		13.56	□□□□□ -0.24
TCF4-231	ENST00000566279	PUS7	Q96PZ0	661 aa	Known RBP	13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	NUDC	Q9Y266	331 aa		13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	PIK3C2A	O00443	1686 aa		13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	SHPRH	Q149N8	1683 aa		13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	SPATA31A3	Q5VYP0	1347 aa		13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	CABLES1	Q8TDN4	633 aa		13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	LRRC59	Q96AG4	307 aa	Known RBP	13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	PNPLA6	Q8IY17	1366 aa		13.55	□□□□□ -0.24
TCF4-231	ENST00000566279	ZRANB1	Q9UGI0	708 aa		13.54	□□□□□ -0.24
TCF4-231	ENST00000566279	ANKRD36B	Q8N2N9	1353 aa		13.54	□□□□□ -0.24
TCF4-231	ENST00000566279	NSD3	Q9BZ95	1437 aa		13.54	□□□□□ -0.24
TCF4-231	ENST00000566279	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.54	□□□□□ -0.24
TCF4-231	ENST00000566279	SSH2	Q76I76	1423 aa		13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	JCAD	Q9P266	1359 aa		13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	NUTM2E	B1AL46	878 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	TERF2IP	Q9NYB0	399 aa		13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	ABCA3	Q99758	1704 aa		13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	MARF1	Q9Y4F3	1742 aa	Known RBP	13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	SBNO1	A3KN83	1393 aa		13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	NINL	Q9Y2I6	1382 aa		13.53	□□□□□ -0.24
TCF4-231	ENST00000566279	TTC21B	Q7Z4L5	1316 aa		13.52	□□□□□ -0.24
TCF4-231	ENST00000566279	LRP6	O75581	1613 aa		13.52	□□□□□ -0.25
TCF4-231	ENST00000566279	IRX6	P78412	446 aa	Predicted RBP	13.52	□□□□□ -0.25
TCF4-231	ENST00000566279	NME9	Q86XW9	330 aa		13.52	□□□□□ -0.25
TCF4-231	ENST00000566279	ABTB2	Q8N961	1025 aa		13.52	□□□□□ -0.25
TCF4-231	ENST00000566279	CRYBG1	Q9Y4K1	1723 aa		13.52	□□□□□ -0.25
TCF4-231	ENST00000566279	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.52	□□□□□ -0.25
TCF4-231	ENST00000566279	MED1	Q15648	1581 aa	Predicted RBP	13.51	□□□□□ -0.25
TCF4-231	ENST00000566279	ZNF692	Q9BU19	519 aa	Predicted RBP	13.51	□□□□□ -0.25
TCF4-231	ENST00000566279	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.5	□□□□□ -0.25
TCF4-231	ENST00000566279	EDC4	Q6P2E9	1401 aa	Known RBP	13.5	□□□□□ -0.25
TCF4-231	ENST00000566279	ADAMTS8	Q9UP79	889 aa		13.5	□□□□□ -0.25
TCF4-231	ENST00000566279	SOX12	O15370	315 aa		13.49	□□□□□ -0.25
TCF4-231	ENST00000566279	KIF20B	Q96Q89	1820 aa		13.49	□□□□□ -0.25
TCF4-231	ENST00000566279	ERICH6B	Q5W0A0	696 aa		13.49	□□□□□ -0.25
TCF4-231	ENST00000566279	ADAMTS2	O95450	1211 aa		13.48	□□□□□ -0.25
TCF4-231	ENST00000566279	NLRP6	P59044	892 aa		13.48	□□□□□ -0.25
TCF4-231	ENST00000566279	RNF123	Q5XPI4	1314 aa		13.48	□□□□□ -0.25
TCF4-231	ENST00000566279	ARHGEF10	O15013	1369 aa		13.48	□□□□□ -0.25
TCF4-231	ENST00000566279	GGNBP2	Q9H3C7	697 aa		13.48	□□□□□ -0.25
TCF4-231	ENST00000566279	PDE3B	Q13370	1112 aa		13.47	□□□□□ -0.25
TCF4-231	ENST00000566279	WDR43	Q15061	677 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
TCF4-231	ENST00000566279	SALL2	Q9Y467	1007 aa	Predicted RBP	13.47	□□□□□ -0.25
TCF4-231	ENST00000566279	FBLN1	P23142	703 aa		13.46	□□□□□ -0.25
TCF4-231	ENST00000566279	TTC21A	Q8NDW8	1320 aa		13.46	□□□□□ -0.26
TCF4-231	ENST00000566279	HAP1	P54257	671 aa	Predicted RBP	13.46	□□□□□ -0.26
TCF4-231	ENST00000566279	CGNL1	Q0VF96	1302 aa		13.45	□□□□□ -0.26
TCF4-231	ENST00000566279	FYB1	O15117	783 aa		13.45	□□□□□ -0.26
TCF4-231	ENST00000566279	SPATA31A6	Q5VVP1	1343 aa		13.45	□□□□□ -0.26
TCF4-231	ENST00000566279	MORC1	Q86VD1	984 aa		13.45	□□□□□ -0.26
TCF4-231	ENST00000566279	NSD2	O96028	1365 aa		13.44	□□□□□ -0.26
TCF4-231	ENST00000566279	ZBTB7C	A1YPR0	619 aa		13.44	□□□□□ -0.26
TCF4-231	ENST00000566279	ZC3H6	P61129	1189 aa	Known RBP	13.44	□□□□□ -0.26
TCF4-231	ENST00000566279	OVOS2	A0A0J9YW53	1432 aa		13.44	□□□□□ -0.26
TCF4-231	ENST00000566279	OVOS2	Q6IE36	1432 aa		13.44	□□□□□ -0.26
TCF4-231	ENST00000566279	USP54	Q70EL1	1684 aa		13.43	□□□□□ -0.26
TCF4-231	ENST00000566279	USP19	O94966	1318 aa		13.43	□□□□□ -0.26
TCF4-231	ENST00000566279	SLIT3	O75094	1523 aa		13.43	□□□□□ -0.26
TCF4-231	ENST00000566279	MEX3C	Q5U5Q3	659 aa	Known RBP	13.43	□□□□□ -0.26
TCF4-231	ENST00000566279	C8orf37	Q96NL8	207 aa		13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms