RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 SRPK2P78362 688 aaKnown RBP13.99□□□□□ -0.17
CLN3-220ENST00000566040 COL14A1Q05707 1796 aaKnown RBP13.99□□□□□ -0.17
CLN3-220ENST00000566040 ATAD2Q6PL18 1390 aa13.98□□□□□ -0.17
CLN3-220ENST00000566040 CABP1Q9NZU7 370 aa13.98□□□□□ -0.17
CLN3-220ENST00000566040 KIF20BQ96Q89 1820 aa13.98□□□□□ -0.17
CLN3-220ENST00000566040 SLIT2O94813 1529 aa13.98□□□□□ -0.17
CLN3-220ENST00000566040 RGPD5Q99666 1765 aa13.98□□□□□ -0.17
CLN3-220ENST00000566040 NFAT5O94916 1531 aa13.97□□□□□ -0.17
CLN3-220ENST00000566040 ARHGEF10O15013 1369 aa13.96□□□□□ -0.17
CLN3-220ENST00000566040 GLI3P10071 1580 aa13.96□□□□□ -0.17
CLN3-220ENST00000566040 BCL9LQ86UU0 1499 aa13.96□□□□□ -0.17
CLN3-220ENST00000566040 POTEAQ6S8J7 498 aa13.96□□□□□ -0.17
CLN3-220ENST00000566040 CABLES1Q8TDN4 633 aa13.96□□□□□ -0.17
CLN3-220ENST00000566040 LTN1O94822 1766 aa13.96□□□□□ -0.18
CLN3-220ENST00000566040 A0A1W2PP64 1363 aa13.96□□□□□ -0.18
CLN3-220ENST00000566040 USP19O94966 1318 aa13.95□□□□□ -0.18
CLN3-220ENST00000566040 NUTM2BA6NNL0 878 aaPredicted RBP13.95□□□□□ -0.18
CLN3-220ENST00000566040 NUTM2EB1AL46 878 aaPredicted RBP13.95□□□□□ -0.18
CLN3-220ENST00000566040 NUTM2AQ8IVF1 878 aaPredicted RBP13.95□□□□□ -0.18
CLN3-220ENST00000566040 NGDNQ8NEJ9 315 aaKnown RBP13.95□□□□□ -0.18
CLN3-220ENST00000566040 PSME1Q06323 249 aa13.94□□□□□ -0.18
CLN3-220ENST00000566040 PUS7Q96PZ0 661 aaKnown RBP13.94□□□□□ -0.18
CLN3-220ENST00000566040 ANKRD26Q9UPS8 1709 aa13.93□□□□□ -0.18
CLN3-220ENST00000566040 HSPA5P11021 654 aaKnown RBP13.93□□□□□ -0.18
CLN3-220ENST00000566040 SLC12A5Q9H2X9 1139 aa13.93□□□□□ -0.18
CLN3-220ENST00000566040 BRD4O60885 1362 aaPredicted RBP13.93□□□□□ -0.18
CLN3-220ENST00000566040 BRWD3Q6RI45 1802 aa13.92□□□□□ -0.18
CLN3-220ENST00000566040 WNK3Q9BYP7 1800 aa13.92□□□□□ -0.18
CLN3-220ENST00000566040 ATRNO75882 1429 aa13.92□□□□□ -0.18
CLN3-220ENST00000566040 C11orf95C9JLR9 678 aaPredicted RBP13.92□□□□□ -0.18
CLN3-220ENST00000566040 AFF2P51816 1311 aa13.91□□□□□ -0.18
CLN3-220ENST00000566040 OVOS2A0A0J9YW53 1432 aa13.91□□□□□ -0.18
CLN3-220ENST00000566040 OVOS2Q6IE36 1432 aa13.91□□□□□ -0.18
CLN3-220ENST00000566040 TTC21BQ7Z4L5 1316 aa13.9□□□□□ -0.18
CLN3-220ENST00000566040 EDC4Q6P2E9 1401 aaKnown RBP13.9□□□□□ -0.18
CLN3-220ENST00000566040 ADAMTS2O95450 1211 aa13.9□□□□□ -0.18
CLN3-220ENST00000566040 FNBP4Q8N3X1 1017 aaPredicted RBP13.9□□□□□ -0.18
CLN3-220ENST00000566040 CAMTA1Q9Y6Y1 1673 aa13.9□□□□□ -0.18
CLN3-220ENST00000566040 KTN1Q86UP2 1357 aaKnown RBP13.89□□□□□ -0.19
CLN3-220ENST00000566040 NINLQ9Y2I6 1382 aa13.89□□□□□ -0.19
CLN3-220ENST00000566040 NUTM2GQ5VZR2 741 aa13.89□□□□□ -0.19
CLN3-220ENST00000566040 C8orf37Q96NL8 207 aa13.89□□□□□ -0.19
CLN3-220ENST00000566040 USP31Q70CQ4 1352 aa13.88□□□□□ -0.19
CLN3-220ENST00000566040 ANKRD36BQ8N2N9 1353 aa13.88□□□□□ -0.19
CLN3-220ENST00000566040 ZRANB1Q9UGI0 708 aa13.88□□□□□ -0.19
CLN3-220ENST00000566040 THSD7AQ9UPZ6 1657 aa13.88□□□□□ -0.19
CLN3-220ENST00000566040 PEAK1Q9H792 1746 aa13.87□□□□□ -0.19
CLN3-220ENST00000566040 RGS12O14924 1447 aa13.87□□□□□ -0.19
CLN3-220ENST00000566040 CPDO75976 1380 aa13.86□□□□□ -0.19
CLN3-220ENST00000566040 KIAA0232Q92628 1395 aa13.86□□□□□ -0.19
CLN3-220ENST00000566040 EP400Q96L91 3159 aa13.86□□□□□ -0.19
CLN3-220ENST00000566040 FAM83GA6ND36 823 aa13.86□□□□□ -0.19
CLN3-220ENST00000566040 PAK3O75914 559 aaPredicted RBP13.86□□□□□ -0.19
CLN3-220ENST00000566040 EIF4G2P78344 907 aaKnown RBP eCLIP13.86□□□□□ -0.19
CLN3-220ENST00000566040 TMF1P82094 1093 aa13.86□□□□□ -0.19
CLN3-220ENST00000566040 CDK12Q9NYV4 1490 aaPredicted RBP13.86□□□□□ -0.19
CLN3-220ENST00000566040 RGPD2P0DJD1 1756 aa13.86□□□□□ -0.19
CLN3-220ENST00000566040 PLEKHG5O94827 1062 aa13.85□□□□□ -0.19
CLN3-220ENST00000566040 MEX3CQ5U5Q3 659 aaKnown RBP13.85□□□□□ -0.19
CLN3-220ENST00000566040 LMOD2Q6P5Q4 547 aa13.85□□□□□ -0.19
CLN3-220ENST00000566040 PHF23Q9BUL5 403 aaPredicted RBP13.85□□□□□ -0.19
CLN3-220ENST00000566040 TTC21AQ8NDW8 1320 aa13.85□□□□□ -0.19
CLN3-220ENST00000566040 ABCC6O95255 1503 aa13.85□□□□□ -0.19
CLN3-220ENST00000566040 NME9Q86XW9 330 aa13.84□□□□□ -0.19
CLN3-220ENST00000566040 CARD14Q9BXL6 1004 aa13.84□□□□□ -0.19
CLN3-220ENST00000566040 ABTB2Q8N961 1025 aa13.83□□□□□ -0.2
CLN3-220ENST00000566040 ZNF692Q9BU19 519 aaPredicted RBP13.83□□□□□ -0.2
CLN3-220ENST00000566040 COL5A2P05997 1499 aaPredicted RBP13.82□□□□□ -0.2
CLN3-220ENST00000566040 TMC1Q8TDI8 760 aa13.82□□□□□ -0.2
CLN3-220ENST00000566040 NGLY1Q96IV0 654 aa13.82□□□□□ -0.2
CLN3-220ENST00000566040 NSD3Q9BZ95 1437 aa13.81□□□□□ -0.2
CLN3-220ENST00000566040 USP21Q9UK80 565 aa13.81□□□□□ -0.2
CLN3-220ENST00000566040 KIF7Q2M1P5 1343 aa13.81□□□□□ -0.2
CLN3-220ENST00000566040 FAM208AQ9UK61 1670 aaKnown RBP13.81□□□□□ -0.2
CLN3-220ENST00000566040 MAP2P11137 1827 aaKnown RBP13.8□□□□□ -0.2
CLN3-220ENST00000566040 GCP02774 474 aa13.8□□□□□ -0.2
CLN3-220ENST00000566040 CHRNA2Q15822 529 aa13.8□□□□□ -0.2
CLN3-220ENST00000566040 ZNF772Q68DY9 489 aaPredicted RBP13.8□□□□□ -0.2
CLN3-220ENST00000566040 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN3-220ENST00000566040 PARP4Q9UKK3 1724 aaKnown RBP13.8□□□□□ -0.2
CLN3-220ENST00000566040 NLRP6P59044 892 aa13.79□□□□□ -0.2
CLN3-220ENST00000566040 LRRC37A3O60309 1634 aa13.79□□□□□ -0.2
CLN3-220ENST00000566040 SLC24A1O60721 1099 aa13.78□□□□□ -0.2
CLN3-220ENST00000566040 ZC3H6P61129 1189 aaKnown RBP13.78□□□□□ -0.2
CLN3-220ENST00000566040 HDGFL2Q7Z4V5 671 aaPredicted RBP13.78□□□□□ -0.2
CLN3-220ENST00000566040 NLRP13Q86W25 1043 aa13.78□□□□□ -0.2
CLN3-220ENST00000566040 UNC5CLQ8IV45 518 aa13.78□□□□□ -0.2
CLN3-220ENST00000566040 QTRT2Q9H974 415 aaKnown RBP13.78□□□□□ -0.2
CLN3-220ENST00000566040 TERF2IPQ9NYB0 399 aa13.78□□□□□ -0.2
CLN3-220ENST00000566040 SHANK3Q9BYB0 1731 aa13.78□□□□□ -0.2
CLN3-220ENST00000566040 WASHC2AQ641Q2 1341 aa13.77□□□□□ -0.21
CLN3-220ENST00000566040 AATKQ6ZMQ8 1374 aa13.77□□□□□ -0.21
CLN3-220ENST00000566040 ARHGEF25Q86VW2 580 aa13.77□□□□□ -0.21
CLN3-220ENST00000566040 CCDC7Q96M83 1385 aa13.77□□□□□ -0.21
CLN3-220ENST00000566040 BTG4Q9NY30 223 aa13.77□□□□□ -0.21
CLN3-220ENST00000566040 FYB1O15117 783 aa13.76□□□□□ -0.21
CLN3-220ENST00000566040 VPS72Q15906 364 aa13.76□□□□□ -0.21
CLN3-220ENST00000566040 PRDM11Q9NQV5 511 aa13.76□□□□□ -0.21
CLN3-220ENST00000566040 AXIN2Q9Y2T1 843 aa13.76□□□□□ -0.21
CLN3-220ENST00000566040 FBLN1P23142 703 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms