RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 KIF7Q2M1P5 1343 aa23.46■■□□□ 1.35
CMTM3-208ENST00000564247 PUS7Q96PZ0 661 aaKnown RBP23.46■■□□□ 1.35
CMTM3-208ENST00000564247 ALS2Q96Q42 1657 aa23.45■■□□□ 1.34
CMTM3-208ENST00000564247 SRPK2P78362 688 aaKnown RBP23.45■■□□□ 1.34
CMTM3-208ENST00000564247 FNBP4Q8N3X1 1017 aaPredicted RBP23.44■■□□□ 1.34
CMTM3-208ENST00000564247 ABCA3Q99758 1704 aa23.42■■□□□ 1.34
CMTM3-208ENST00000564247 POLR3AO14802 1390 aaPredicted RBP23.42■■□□□ 1.34
CMTM3-208ENST00000564247 PLEKHG3A1L390 1219 aa23.42■■□□□ 1.34
CMTM3-208ENST00000564247 RXRBP28702 533 aa23.42■■□□□ 1.34
CMTM3-208ENST00000564247 LMOD2Q6P5Q4 547 aa23.42■■□□□ 1.34
CMTM3-208ENST00000564247 QTRT2Q9H974 415 aaKnown RBP23.41■■□□□ 1.34
CMTM3-208ENST00000564247 CABP2Q9NPB3 220 aa23.41■■□□□ 1.34
CMTM3-208ENST00000564247 USP21Q9UK80 565 aa23.41■■□□□ 1.34
CMTM3-208ENST00000564247 ACEP12821 1306 aa23.39■■□□□ 1.34
CMTM3-208ENST00000564247 DDX10Q13206 875 aaKnown RBP23.39■■□□□ 1.33
CMTM3-208ENST00000564247 CABLES1Q8TDN4 633 aa23.39■■□□□ 1.33
CMTM3-208ENST00000564247 CDK12Q9NYV4 1490 aaPredicted RBP23.38■■□□□ 1.33
CMTM3-208ENST00000564247 PPIP5K1Q6PFW1 1433 aa23.38■■□□□ 1.33
CMTM3-208ENST00000564247 HAP1P54257 671 aaPredicted RBP23.37■■□□□ 1.33
CMTM3-208ENST00000564247 RBM6P78332 1123 aaKnown RBP23.37■■□□□ 1.33
CMTM3-208ENST00000564247 PAK3O75914 559 aaPredicted RBP23.36■■□□□ 1.33
CMTM3-208ENST00000564247 TRPC5Q9UL62 973 aaPredicted RBP23.36■■□□□ 1.33
CMTM3-208ENST00000564247 BCL9LQ86UU0 1499 aa23.36■■□□□ 1.33
CMTM3-208ENST00000564247 TMC1Q8TDI8 760 aa23.35■■□□□ 1.33
CMTM3-208ENST00000564247 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.35■■□□□ 1.33
CMTM3-208ENST00000564247 ATAD2Q6PL18 1390 aa23.35■■□□□ 1.33
CMTM3-208ENST00000564247 ATRNO75882 1429 aa23.34■■□□□ 1.33
CMTM3-208ENST00000564247 SLIT2O94813 1529 aa23.34■■□□□ 1.33
CMTM3-208ENST00000564247 CRYBG1Q9Y4K1 1723 aa23.34■■□□□ 1.33
CMTM3-208ENST00000564247 PLEKHG5O94827 1062 aa23.33■■□□□ 1.33
CMTM3-208ENST00000564247 CABP1Q9NZU7 370 aa23.32■■□□□ 1.32
CMTM3-208ENST00000564247 NWD2Q9ULI1 1742 aa23.3■■□□□ 1.32
CMTM3-208ENST00000564247 BRD4O60885 1362 aaPredicted RBP23.3■■□□□ 1.32
CMTM3-208ENST00000564247 PLCH1Q4KWH8 1693 aa23.3■■□□□ 1.32
CMTM3-208ENST00000564247 UNC5CLQ8IV45 518 aa23.3■■□□□ 1.32
CMTM3-208ENST00000564247 NINLQ9Y2I6 1382 aa23.29■■□□□ 1.32
CMTM3-208ENST00000564247 RGS12O14924 1447 aa23.28■■□□□ 1.32
CMTM3-208ENST00000564247 SLC12A5Q9H2X9 1139 aa23.28■■□□□ 1.32
CMTM3-208ENST00000564247 PHRF1Q9P1Y6 1649 aaKnown RBP23.26■■□□□ 1.31
CMTM3-208ENST00000564247 USP6P35125 1406 aa23.26■■□□□ 1.31
CMTM3-208ENST00000564247 FAM83GA6ND36 823 aa23.26■■□□□ 1.31
CMTM3-208ENST00000564247 DIEXFQ68CQ4 756 aaKnown RBP23.26■■□□□ 1.31
CMTM3-208ENST00000564247 PANK3Q9H999 370 aa23.26■■□□□ 1.31
CMTM3-208ENST00000564247 TERF2IPQ9NYB0 399 aa23.26■■□□□ 1.31
CMTM3-208ENST00000564247 COL14A1Q05707 1796 aaKnown RBP23.25■■□□□ 1.31
CMTM3-208ENST00000564247 ABTB2Q8N961 1025 aa23.25■■□□□ 1.31
CMTM3-208ENST00000564247 GJD4Q96KN9 370 aaPredicted RBP23.25■■□□□ 1.31
CMTM3-208ENST00000564247 AKAP12Q02952 1782 aa23.24■■□□□ 1.31
CMTM3-208ENST00000564247 HDGFL2Q7Z4V5 671 aaPredicted RBP23.24■■□□□ 1.31
CMTM3-208ENST00000564247 NUTM2GQ5VZR2 741 aa23.22■■□□□ 1.31
CMTM3-208ENST00000564247 ZNF692Q9BU19 519 aaPredicted RBP23.22■■□□□ 1.31
CMTM3-208ENST00000564247 SSH2Q76I76 1423 aa23.22■■□□□ 1.31
CMTM3-208ENST00000564247 NRAPQ86VF7 1730 aa23.22■■□□□ 1.31
CMTM3-208ENST00000564247 VPS72Q15906 364 aa23.21■■□□□ 1.31
CMTM3-208ENST00000564247 GLI3P10071 1580 aa23.21■■□□□ 1.31
CMTM3-208ENST00000564247 CPSF1Q10570 1443 aaKnown RBP23.2■■□□□ 1.3
CMTM3-208ENST00000564247 USP19O94966 1318 aa23.2■■□□□ 1.3
CMTM3-208ENST00000564247 NLRP13Q86W25 1043 aa23.2■■□□□ 1.3
CMTM3-208ENST00000564247 MYOM1P52179 1685 aa23.19■■□□□ 1.3
CMTM3-208ENST00000564247 NRKQ7Z2Y5 1582 aa23.19■■□□□ 1.3
CMTM3-208ENST00000564247 PRDM11Q9NQV5 511 aa23.19■■□□□ 1.3
CMTM3-208ENST00000564247 BTG4Q9NY30 223 aa23.19■■□□□ 1.3
CMTM3-208ENST00000564247 KNSTRNQ9Y448 316 aa23.19■■□□□ 1.3
CMTM3-208ENST00000564247 ANKRD36BQ8N2N9 1353 aa23.18■■□□□ 1.3
CMTM3-208ENST00000564247 KIAA0232Q92628 1395 aa23.18■■□□□ 1.3
CMTM3-208ENST00000564247 MON2Q7Z3U7 1717 aa23.16■■□□□ 1.3
CMTM3-208ENST00000564247 PIK3C2AO00443 1686 aa23.16■■□□□ 1.3
CMTM3-208ENST00000564247 UPF1Q92900 1129 aaKnown RBP eCLIP23.15■■□□□ 1.34e-7■■■■■ 29.7
CMTM3-208ENST00000564247 CPDO75976 1380 aa23.14■■□□□ 1.3
CMTM3-208ENST00000564247 KTN1Q86UP2 1357 aaKnown RBP23.14■■□□□ 1.3
CMTM3-208ENST00000564247 TTC21BQ7Z4L5 1316 aa23.14■■□□□ 1.3
CMTM3-208ENST00000564247 PER1O15534 1290 aaPredicted RBP23.14■■□□□ 1.29
CMTM3-208ENST00000564247 NLRP6P59044 892 aa23.14■■□□□ 1.29
CMTM3-208ENST00000564247 ZC3H6P61129 1189 aaKnown RBP23.14■■□□□ 1.29
CMTM3-208ENST00000564247 TTC21AQ8NDW8 1320 aa23.13■■□□□ 1.29
CMTM3-208ENST00000564247 CD163L1Q9NR16 1453 aa23.13■■□□□ 1.29
CMTM3-208ENST00000564247 GCP02774 474 aa23.13■■□□□ 1.29
CMTM3-208ENST00000564247 CARD14Q9BXL6 1004 aa23.13■■□□□ 1.29
CMTM3-208ENST00000564247 CCDC9Q9Y3X0 531 aaKnown RBP23.13■■□□□ 1.29
CMTM3-208ENST00000564247 A0A1W2PP64 1363 aa23.13■■□□□ 1.29
CMTM3-208ENST00000564247 SLIT3O75094 1523 aa23.13■■□□□ 1.29
CMTM3-208ENST00000564247 CHRNA2Q15822 529 aa23.12■■□□□ 1.29
CMTM3-208ENST00000564247 EP400Q96L91 3159 aa23.11■■□□□ 1.29
CMTM3-208ENST00000564247 ONECUT3O60422 494 aaPredicted RBP23.11■■□□□ 1.29
CMTM3-208ENST00000564247 ANP32CO43423 234 aa23.1■■□□□ 1.29
CMTM3-208ENST00000564247 NSD3Q9BZ95 1437 aa23.09■■□□□ 1.29
CMTM3-208ENST00000564247 LMO7Q8WWI1 1683 aa23.09■■□□□ 1.29
CMTM3-208ENST00000564247 BRWD3Q6RI45 1802 aa23.08■■□□□ 1.29
CMTM3-208ENST00000564247 CGNL1Q0VF96 1302 aa23.08■■□□□ 1.28
CMTM3-208ENST00000564247 SPATA31A5Q5VU36 1347 aa23.08■■□□□ 1.28
CMTM3-208ENST00000564247 SPATA31A7Q8IWB4 1347 aa23.08■■□□□ 1.28
CMTM3-208ENST00000564247 CAMTA1Q9Y6Y1 1673 aa23.06■■□□□ 1.28
CMTM3-208ENST00000564247 SEPT12Q8IYM1 358 aa23.06■■□□□ 1.28
CMTM3-208ENST00000564247 CNGB1Q14028 1251 aaPredicted RBP23.05■■□□□ 1.28
CMTM3-208ENST00000564247 USP54Q70EL1 1684 aa23.05■■□□□ 1.28
CMTM3-208ENST00000564247 EDC4Q6P2E9 1401 aaKnown RBP23.05■■□□□ 1.28
CMTM3-208ENST00000564247 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.04■■□□□ 1.28
CMTM3-208ENST00000564247 USP31Q70CQ4 1352 aa23.03■■□□□ 1.28
CMTM3-208ENST00000564247 AMER1Q5JTC6 1135 aaPredicted RBP23.03■■□□□ 1.28
CMTM3-208ENST00000564247 CC2D1BQ5T0F9 858 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms