RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 L3MBTL2Q969R5 705 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 YY1AP1Q9H869 796 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 CBFA2T2O43439 604 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 LMAN1P49257 510 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 CCDC50Q8IVM0 306 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 DZIP1LQ8IYY4 767 aaKnown RBP7.43□□□□□ -1.22
CLK3-212ENST00000563418 RSPH14Q9UHP6 348 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 LRRFIP2Q9Y608 721 aaKnown RBP7.43□□□□□ -1.22
CLK3-212ENST00000563418 COG6Q9Y2V7 657 aa7.43□□□□□ -1.22
CLK3-212ENST00000563418 TRDNQ13061 729 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 DCAF11Q8TEB1 546 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 A6NNZ2 444 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 TUBB8Q3ZCM7 444 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 SMC3Q9UQE7 1217 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 RSRC1Q96IZ7 334 aaKnown RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 TBC1D32Q96NH3 1257 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 MPHOSPH9Q99550 1183 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 TUBBP07437 444 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 SH3BGRP55822 239 aaPredicted RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 FOXD4L5Q5VV16 416 aaPredicted RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 FOXD4L4Q8WXT5 416 aaPredicted RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 AP1ARQ63HQ0 302 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 SPC24Q8NBT2 197 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 ZFP91Q96JP5 570 aaPredicted RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 KANK4Q5T7N3 995 aaPredicted RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 GBP2P32456 591 aaPredicted RBP7.42□□□□□ -1.22
CLK3-212ENST00000563418 CNPY4Q8N129 248 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 ZMYM3Q14202 1370 aa7.42□□□□□ -1.22
CLK3-212ENST00000563418 ZSCAN23Q3MJ62 389 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 SF3A1Q15459 793 aaKnown RBP7.41□□□□□ -1.22
CLK3-212ENST00000563418 ANKRD45Q5TZF3 282 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 POLA1P09884 1462 aaPredicted RBP7.41□□□□□ -1.22
CLK3-212ENST00000563418 CEP135Q66GS9 1140 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 TRERF1Q96PN7 1200 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 CRACR2AQ9BSW2 395 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 CCDC146Q8IYE0 955 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 WDR66Q8TBY9 1149 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 CCDC196A0A1B0GTZ2 297 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 SMARCE1Q969G3 411 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 SYCP1Q15431 976 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 ANKRD18AQ8IVF6 992 aa7.41□□□□□ -1.22
CLK3-212ENST00000563418 C10orf67Q8IYJ2 551 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 PIBF1Q8WXW3 757 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 ARFGAP3Q9NP61 516 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 GEMIN8Q9NWZ8 242 aaKnown RBP7.4□□□□□ -1.22
CLK3-212ENST00000563418 ZNF853P0CG23 659 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 STAC3Q96MF2 364 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 MORC1Q86VD1 984 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 TOP2AP11388 1531 aaKnown RBP7.4□□□□□ -1.22
CLK3-212ENST00000563418 KINO60870 393 aaKnown RBP7.4□□□□□ -1.22
CLK3-212ENST00000563418 CEP112Q8N8E3 955 aa7.4□□□□□ -1.22
CLK3-212ENST00000563418 IBTKQ9P2D0 1353 aaPredicted RBP7.4□□□□□ -1.23
CLK3-212ENST00000563418 ZKSCAN1P17029 563 aaPredicted RBP7.4□□□□□ -1.23
CLK3-212ENST00000563418 RUFY2Q8WXA3 655 aa7.4□□□□□ -1.23
CLK3-212ENST00000563418 C16orf45Q96MC5 204 aaPredicted RBP7.4□□□□□ -1.23
CLK3-212ENST00000563418 PNISRQ8TF01 805 aaKnown RBP7.4□□□□□ -1.23
CLK3-212ENST00000563418 GCC1Q96CN9 775 aa7.4□□□□□ -1.23
CLK3-212ENST00000563418 TOMM22Q9NS69 142 aa7.4□□□□□ -1.23
CLK3-212ENST00000563418 FSD2A1L4K1 749 aa7.4□□□□□ -1.23
CLK3-212ENST00000563418 ADCY5O95622 1261 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 PPP1R9BQ96SB3 815 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 OLFM4Q6UX06 510 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 SNX21Q969T3 373 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 RPAINQ86UA6 219 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 CENPHQ9H3R5 247 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 SLU7O95391 586 aaKnown RBP7.39□□□□□ -1.23
CLK3-212ENST00000563418 SFPQP23246 707 aaKnown RBP eCLIP7.39□□□□□ -1.23
CLK3-212ENST00000563418 RBBP5Q15291 538 aaKnown RBP7.39□□□□□ -1.23
CLK3-212ENST00000563418 RBM33Q96EV2 1170 aaKnown RBP7.39□□□□□ -1.23
CLK3-212ENST00000563418 TNMDQ9H2S6 317 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 ERCC3P19447 782 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 ARID4AP29374 1257 aaPredicted RBP7.39□□□□□ -1.23
CLK3-212ENST00000563418 CEP57L1Q8IYX8 460 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 ZNF526Q8TF50 670 aaPredicted RBP7.39□□□□□ -1.23
CLK3-212ENST00000563418 USP25Q9UHP3 1055 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 MAP3K11Q16584 847 aa7.39□□□□□ -1.23
CLK3-212ENST00000563418 KRBA2Q6ZNG9 492 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 RTF1Q92541 710 aaKnown RBP7.38□□□□□ -1.23
CLK3-212ENST00000563418 SMARCC1Q92922 1105 aaPredicted RBP7.38□□□□□ -1.23
CLK3-212ENST00000563418 EBAG9O00559 213 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 GORABQ5T7V8 394 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 RNF168Q8IYW5 571 aaPredicted RBP7.38□□□□□ -1.23
CLK3-212ENST00000563418 ENOX2Q16206 610 aaKnown RBP7.38□□□□□ -1.23
CLK3-212ENST00000563418 CASQ1P31415 396 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 CCDC172P0C7W6 258 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 PDZRN3Q9UPQ7 1066 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 PEG3Q9GZU2 1588 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 NPHP1O15259 732 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 CAPN2P17655 700 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 ERO1AQ96HE7 468 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 SPATS2LQ9NUQ6 558 aaKnown RBP7.38□□□□□ -1.23
CLK3-212ENST00000563418 SCAPERQ9BY12 1400 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 HSPA4P34932 840 aa7.38□□□□□ -1.23
CLK3-212ENST00000563418 EIF5P55010 431 aaKnown RBP7.38□□□□□ -1.23
CLK3-212ENST00000563418 PIP4K2AP48426 406 aaPredicted RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 NBPF11Q86T75 865 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 NUP62CLQ9H1M0 184 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 AKAP17AQ02040 695 aaKnown RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 CCDC150Q8NCX0 1101 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 NKTRP30414 1462 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms