RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 ADAMTS2O95450 1211 aa19.97■□□□□ 0.79
USP3-221ENST00000561442 HDGFL2Q7Z4V5 671 aaPredicted RBP19.97■□□□□ 0.79
USP3-221ENST00000561442 KTN1Q86UP2 1357 aaKnown RBP19.96■□□□□ 0.79
USP3-221ENST00000561442 CPSF1Q10570 1443 aaKnown RBP19.96■□□□□ 0.79
USP3-221ENST00000561442 ZNF692Q9BU19 519 aaPredicted RBP19.96■□□□□ 0.79
USP3-221ENST00000561442 CD163L1Q9NR16 1453 aa19.96■□□□□ 0.79
USP3-221ENST00000561442 C11orf95C9JLR9 678 aaPredicted RBP19.95■□□□□ 0.78
USP3-221ENST00000561442 ABTB2Q8N961 1025 aa19.95■□□□□ 0.78
USP3-221ENST00000561442 TERF2IPQ9NYB0 399 aa19.95■□□□□ 0.78
USP3-221ENST00000561442 A0A1W2PP64 1363 aa19.95■□□□□ 0.78
USP3-221ENST00000561442 NINLQ9Y2I6 1382 aa19.95■□□□□ 0.78
USP3-221ENST00000561442 HAP1P54257 671 aaPredicted RBP19.94■□□□□ 0.78
USP3-221ENST00000561442 PHF23Q9BUL5 403 aaPredicted RBP19.94■□□□□ 0.78
USP3-221ENST00000561442 TTC21BQ7Z4L5 1316 aa19.94■□□□□ 0.78
USP3-221ENST00000561442 COL22A1Q8NFW1 1626 aaPredicted RBP19.93■□□□□ 0.78
USP3-221ENST00000561442 SSH2Q76I76 1423 aa19.93■□□□□ 0.78
USP3-221ENST00000561442 ZEB1P37275 1124 aaPredicted RBP19.92■□□□□ 0.78
USP3-221ENST00000561442 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.92■□□□□ 0.789e-8■■■■□ 26.3
USP3-221ENST00000561442 C8orf37Q96NL8 207 aa19.92■□□□□ 0.78
USP3-221ENST00000561442 BRD4O60885 1362 aaPredicted RBP19.92■□□□□ 0.78
USP3-221ENST00000561442 ALS2Q96Q42 1657 aa19.91■□□□□ 0.78
USP3-221ENST00000561442 ANKRD36BQ8N2N9 1353 aa19.9■□□□□ 0.78
USP3-221ENST00000561442 EDC4Q6P2E9 1401 aaKnown RBP19.88■□□□□ 0.77
USP3-221ENST00000561442 KIF7Q2M1P5 1343 aa19.88■□□□□ 0.77
USP3-221ENST00000561442 TTC21AQ8NDW8 1320 aa19.88■□□□□ 0.77
USP3-221ENST00000561442 NLRP6P59044 892 aa19.88■□□□□ 0.77
USP3-221ENST00000561442 AKAP12Q02952 1782 aa19.88■□□□□ 0.77
USP3-221ENST00000561442 NLRP13Q86W25 1043 aa19.87■□□□□ 0.77
USP3-221ENST00000561442 NME9Q86XW9 330 aa19.87■□□□□ 0.77
USP3-221ENST00000561442 ZRANB1Q9UGI0 708 aa19.87■□□□□ 0.77
USP3-221ENST00000561442 NGLY1Q96IV0 654 aa19.86■□□□□ 0.77
USP3-221ENST00000561442 AFF2P51816 1311 aa19.85■□□□□ 0.77
USP3-221ENST00000561442 RGS17Q9UGC6 210 aaPredicted RBP19.85■□□□□ 0.77
USP3-221ENST00000561442 NRKQ7Z2Y5 1582 aa19.85■□□□□ 0.77
USP3-221ENST00000561442 MON2Q7Z3U7 1717 aa19.85■□□□□ 0.77
USP3-221ENST00000561442 USP19O94966 1318 aa19.84■□□□□ 0.77
USP3-221ENST00000561442 ZC3H6P61129 1189 aaKnown RBP19.83■□□□□ 0.77
USP3-221ENST00000561442 CARD14Q9BXL6 1004 aa19.83■□□□□ 0.77
USP3-221ENST00000561442 PIK3C2AO00443 1686 aa19.83■□□□□ 0.76
USP3-221ENST00000561442 MYOM1P52179 1685 aa19.83■□□□□ 0.76
USP3-221ENST00000561442 SOX12O15370 315 aa19.82■□□□□ 0.76
USP3-221ENST00000561442 NSD3Q9BZ95 1437 aa19.82■□□□□ 0.76
USP3-221ENST00000561442 CCDC7Q96M83 1385 aa19.82■□□□□ 0.76
USP3-221ENST00000561442 WASHC2AQ641Q2 1341 aa19.81■□□□□ 0.76
USP3-221ENST00000561442 GCP02774 474 aa19.81■□□□□ 0.76
USP3-221ENST00000561442 PANK3Q9H999 370 aa19.81■□□□□ 0.76
USP3-221ENST00000561442 ABCA3Q99758 1704 aa19.81■□□□□ 0.76
USP3-221ENST00000561442 ZBTB7CA1YPR0 619 aa19.8■□□□□ 0.76
USP3-221ENST00000561442 PRDM11Q9NQV5 511 aa19.8■□□□□ 0.76
USP3-221ENST00000561442 KIAA0232Q92628 1395 aa19.8■□□□□ 0.76
USP3-221ENST00000561442 FAM83GA6ND36 823 aa19.79■□□□□ 0.76
USP3-221ENST00000561442 CHRNA2Q15822 529 aa19.79■□□□□ 0.76
USP3-221ENST00000561442 USP31Q70CQ4 1352 aa19.79■□□□□ 0.76
USP3-221ENST00000561442 PHRF1Q9P1Y6 1649 aaKnown RBP19.78■□□□□ 0.76
USP3-221ENST00000561442 ZNF772Q68DY9 489 aaPredicted RBP19.78■□□□□ 0.76
USP3-221ENST00000561442 POTEAQ6S8J7 498 aa19.78■□□□□ 0.76
USP3-221ENST00000561442 FNBP4Q8N3X1 1017 aaPredicted RBP19.78■□□□□ 0.76
USP3-221ENST00000561442 GGNBP2Q9H3C7 697 aa19.78■□□□□ 0.76
USP3-221ENST00000561442 USP21Q9UK80 565 aa19.78■□□□□ 0.76
USP3-221ENST00000561442 CRYBG1Q9Y4K1 1723 aa19.77■□□□□ 0.76
USP3-221ENST00000561442 SLIT3O75094 1523 aa19.76■□□□□ 0.75
USP3-221ENST00000561442 FYB1O15117 783 aa19.76■□□□□ 0.75
USP3-221ENST00000561442 COG3Q96JB2 828 aa19.76■□□□□ 0.75
USP3-221ENST00000561442 KCNH5Q8NCM2 988 aa19.75■□□□□ 0.75
USP3-221ENST00000561442 OVOS2A0A0J9YW53 1432 aa19.75■□□□□ 0.75
USP3-221ENST00000561442 OVOS2Q6IE36 1432 aa19.75■□□□□ 0.75
USP3-221ENST00000561442 BTG4Q9NY30 223 aa19.74■□□□□ 0.75
USP3-221ENST00000561442 SLIT2O94813 1529 aa19.74■□□□□ 0.75
USP3-221ENST00000561442 BCL9LQ86UU0 1499 aa19.73■□□□□ 0.75
USP3-221ENST00000561442 CPDO75976 1380 aa19.73■□□□□ 0.75
USP3-221ENST00000561442 QTRT2Q9H974 415 aaKnown RBP19.73■□□□□ 0.75
USP3-221ENST00000561442 CGNL1Q0VF96 1302 aa19.73■□□□□ 0.75
USP3-221ENST00000561442 UNC5CLQ8IV45 518 aa19.72■□□□□ 0.75
USP3-221ENST00000561442 MARF1Q9Y4F3 1742 aaKnown RBP19.71■□□□□ 0.75
USP3-221ENST00000561442 NFAT5O94916 1531 aa19.71■□□□□ 0.75
USP3-221ENST00000561442 FBLN1P23142 703 aa19.7■□□□□ 0.74
USP3-221ENST00000561442 ARHGEF25Q86VW2 580 aa19.7■□□□□ 0.74
USP3-221ENST00000561442 TRPC5Q9UL62 973 aaPredicted RBP19.7■□□□□ 0.74
USP3-221ENST00000561442 ILDR2Q71H61 639 aa19.69■□□□□ 0.74
USP3-221ENST00000561442 KNSTRNQ9Y448 316 aa19.69■□□□□ 0.74
USP3-221ENST00000561442 COL14A1Q05707 1796 aaKnown RBP19.69■□□□□ 0.74
USP3-221ENST00000561442 ATRNO75882 1429 aa19.68■□□□□ 0.74
USP3-221ENST00000561442 STRN4Q9NRL3 753 aa19.68■□□□□ 0.74
USP3-221ENST00000561442 CCDC9Q9Y3X0 531 aaKnown RBP19.68■□□□□ 0.74
USP3-221ENST00000561442 PLCH1Q4KWH8 1693 aa19.67■□□□□ 0.74
USP3-221ENST00000561442 USP54Q70EL1 1684 aa19.67■□□□□ 0.74
USP3-221ENST00000561442 RXRBP28702 533 aa19.66■□□□□ 0.74
USP3-221ENST00000561442 AATKQ6ZMQ8 1374 aa19.66■□□□□ 0.74
USP3-221ENST00000561442 EVA1CP58658 441 aa19.65■□□□□ 0.74
USP3-221ENST00000561442 RRS1Q15050 365 aaKnown RBP19.65■□□□□ 0.74
USP3-221ENST00000561442 AXIN2Q9Y2T1 843 aa19.65■□□□□ 0.74
USP3-221ENST00000561442 CAMTA1Q9Y6Y1 1673 aa19.65■□□□□ 0.74
USP3-221ENST00000561442 TNNT2P45379 298 aaPredicted RBP19.64■□□□□ 0.73
USP3-221ENST00000561442 RBM6P78332 1123 aaKnown RBP19.64■□□□□ 0.73
USP3-221ENST00000561442 CNGB1Q14028 1251 aaPredicted RBP19.64■□□□□ 0.73
USP3-221ENST00000561442 VPS72Q15906 364 aa19.64■□□□□ 0.73
USP3-221ENST00000561442 KIF20BQ96Q89 1820 aa19.64■□□□□ 0.73
USP3-221ENST00000561442 MAP3K19Q56UN5 1328 aa19.63■□□□□ 0.73
USP3-221ENST00000561442 PER1O15534 1290 aaPredicted RBP19.63■□□□□ 0.73
USP3-221ENST00000561442 AMER1Q5JTC6 1135 aaPredicted RBP19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms