RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 RSBN1LQ6PCB5 846 aaPredicted RBP10.21□□□□□ -0.77
VPS13C-210ENST00000561258 NXF1Q9UBU9 619 aaKnown RBP10.21□□□□□ -0.77
VPS13C-210ENST00000561258 VARSP26640 1264 aaKnown RBP10.2□□□□□ -0.78
VPS13C-210ENST00000561258 CTHP32929 405 aa10.2□□□□□ -0.78
VPS13C-210ENST00000561258 PARP9Q8IXQ6 854 aa10.2□□□□□ -0.78
VPS13C-210ENST00000561258 TIMELESSQ9UNS1 1208 aa10.2□□□□□ -0.78
VPS13C-210ENST00000561258 CFAP99D6REC4 459 aa10.19□□□□□ -0.78
VPS13C-210ENST00000561258 VEGFBP49765 207 aa10.19□□□□□ -0.78
VPS13C-210ENST00000561258 NNTQ13423 1086 aa10.19□□□□□ -0.78
VPS13C-210ENST00000561258 LYPD8Q6UX82 237 aa10.19□□□□□ -0.78
VPS13C-210ENST00000561258 ZFP42Q96MM3 310 aa10.19□□□□□ -0.78
VPS13C-210ENST00000561258 SLC16A10Q8TF71 515 aa10.18□□□□□ -0.78
VPS13C-210ENST00000561258 PLEKHG3A1L390 1219 aa10.17□□□□□ -0.78
VPS13C-210ENST00000561258 TRIM66O15016 1216 aa10.17□□□□□ -0.78
VPS13C-210ENST00000561258 HRCP23327 699 aa10.17□□□□□ -0.78
VPS13C-210ENST00000561258 GJA5P36382 358 aa10.17□□□□□ -0.78
VPS13C-210ENST00000561258 MAP10Q9P2G4 905 aa10.17□□□□□ -0.78
VPS13C-210ENST00000561258 SPTLC1O15269 473 aa10.16□□□□□ -0.78
VPS13C-210ENST00000561258 MPNDQ8N594 471 aa10.16□□□□□ -0.78
VPS13C-210ENST00000561258 CABLES1Q8TDN4 633 aa10.16□□□□□ -0.78
VPS13C-210ENST00000561258 FOXJ1Q92949 421 aa10.16□□□□□ -0.78
VPS13C-210ENST00000561258 GTF3C3Q9Y5Q9 886 aa10.16□□□□□ -0.78
VPS13C-210ENST00000561258 TIMP2P16035 220 aa10.15□□□□□ -0.78
VPS13C-210ENST00000561258 GMPRP36959 345 aa10.15□□□□□ -0.78
VPS13C-210ENST00000561258 WDR4P57081 412 aaKnown RBP10.14□□□□□ -0.79
VPS13C-210ENST00000561258 DIXDC1Q155Q3 683 aa10.14□□□□□ -0.79
VPS13C-210ENST00000561258 CSPP1Q1MSJ5 1256 aa10.14□□□□□ -0.79
VPS13C-210ENST00000561258 TMEM132AQ24JP5 1023 aa10.14□□□□□ -0.79
VPS13C-210ENST00000561258 RIC3Q7Z5B4 369 aa10.14□□□□□ -0.79
VPS13C-210ENST00000561258 ZBTB3Q9H5J0 574 aa10.14□□□□□ -0.79
VPS13C-210ENST00000561258 F12P00748 615 aaPredicted RBP10.13□□□□□ -0.79
VPS13C-210ENST00000561258 MRPL14Q6P1L8 145 aaKnown RBP10.13□□□□□ -0.79
VPS13C-210ENST00000561258 FAM174AQ8TBP5 190 aa10.13□□□□□ -0.79
VPS13C-210ENST00000561258 PURBQ96QR8 312 aaKnown RBP10.13□□□□□ -0.79
VPS13C-210ENST00000561258 SOBPA7XYQ1 873 aa10.12□□□□□ -0.79
VPS13C-210ENST00000561258 PER1O15534 1290 aaPredicted RBP10.12□□□□□ -0.79
VPS13C-210ENST00000561258 ADH1CP00326 375 aa10.12□□□□□ -0.79
VPS13C-210ENST00000561258 ARID5BQ14865 1188 aa10.12□□□□□ -0.79
VPS13C-210ENST00000561258 KLF16Q9BXK1 252 aaPredicted RBP10.12□□□□□ -0.79
VPS13C-210ENST00000561258 ERBB4Q15303 1308 aa10.11□□□□□ -0.79
VPS13C-210ENST00000561258 H3BM21 787 aa10.11□□□□□ -0.79
VPS13C-210ENST00000561258 NPAS3Q8IXF0 933 aa10.11□□□□□ -0.79
VPS13C-210ENST00000561258 IRF7Q92985 503 aa10.11□□□□□ -0.79
VPS13C-210ENST00000561258 LORP23490 312 aaPredicted RBP10.1□□□□□ -0.79
VPS13C-210ENST00000561258 SCARF1Q14162 830 aa10.1□□□□□ -0.79
VPS13C-210ENST00000561258 C4orf48Q5BLP8 95 aa10.1□□□□□ -0.79
VPS13C-210ENST00000561258 TSC1Q92574 1164 aa10.1□□□□□ -0.79
VPS13C-210ENST00000561258 AK7Q96M32 723 aa10.1□□□□□ -0.79
VPS13C-210ENST00000561258 CDK15Q96Q40 435 aa10.1□□□□□ -0.79
VPS13C-210ENST00000561258 LIMD1Q9UGP4 676 aa10.1□□□□□ -0.79
VPS13C-210ENST00000561258 PRPF38BQ5VTL8 546 aaKnown RBP10.09□□□□□ -0.79
VPS13C-210ENST00000561258 ZFAND3Q9H8U3 227 aa10.09□□□□□ -0.79
VPS13C-210ENST00000561258 NR3C2P08235 984 aa10.08□□□□□ -0.8
VPS13C-210ENST00000561258 AGERQ15109 404 aa10.08□□□□□ -0.8
VPS13C-210ENST00000561258 ZIC2O95409 532 aaPredicted RBP10.07□□□□□ -0.8
VPS13C-210ENST00000561258 QPCTQ16769 361 aa10.07□□□□□ -0.8
VPS13C-210ENST00000561258 ITPKCQ96DU7 683 aa10.07□□□□□ -0.8
VPS13C-210ENST00000561258 MYSM1Q5VVJ2 828 aa10.06□□□□□ -0.8
VPS13C-210ENST00000561258 ZSCAN1Q8NBB4 408 aa10.06□□□□□ -0.8
VPS13C-210ENST00000561258 NUTM2BA6NNL0 878 aaPredicted RBP10.05□□□□□ -0.8
VPS13C-210ENST00000561258 NUTM2EB1AL46 878 aaPredicted RBP10.05□□□□□ -0.8
VPS13C-210ENST00000561258 GRM5P41594 1212 aa10.05□□□□□ -0.8
VPS13C-210ENST00000561258 C6orf118Q5T5N4 469 aa10.05□□□□□ -0.8
VPS13C-210ENST00000561258 NUTM2DQ5VT03 806 aaPredicted RBP10.05□□□□□ -0.8
VPS13C-210ENST00000561258 NUTM2AQ8IVF1 878 aaPredicted RBP10.05□□□□□ -0.8
VPS13C-210ENST00000561258 PDE4DQ08499 809 aa10.04□□□□□ -0.8
VPS13C-210ENST00000561258 NR5A1Q13285 461 aa10.03□□□□□ -0.8
VPS13C-210ENST00000561258 ERICH6Q7L0X2 663 aa10.03□□□□□ -0.8
VPS13C-210ENST00000561258 BPHLQ86WA6 291 aaPredicted RBP10.03□□□□□ -0.8
VPS13C-210ENST00000561258 LILRB3O75022 631 aa10.02□□□□□ -0.81
VPS13C-210ENST00000561258 RTL5Q5HYW3 569 aaPredicted RBP10.02□□□□□ -0.81
VPS13C-210ENST00000561258 FAM181BA6NEQ2 426 aa10.01□□□□□ -0.81
VPS13C-210ENST00000561258 MAN1A2O60476 641 aa10□□□□□ -0.81
VPS13C-210ENST00000561258 SH3RF1Q7Z6J0 888 aa10□□□□□ -0.81
VPS13C-210ENST00000561258 TUSC1Q2TAM9 212 aa9.99□□□□□ -0.81
VPS13C-210ENST00000561258 C1QTNF2Q9BXJ5 285 aa9.99□□□□□ -0.81
VPS13C-210ENST00000561258 BMP2P12643 396 aa9.98□□□□□ -0.81
VPS13C-210ENST00000561258 BRPF1P55201 1214 aaPredicted RBP9.98□□□□□ -0.81
VPS13C-210ENST00000561258 ARMC2Q8NEN0 867 aa9.98□□□□□ -0.81
VPS13C-210ENST00000561258 SLC24A3Q9HC58 644 aa9.98□□□□□ -0.81
VPS13C-210ENST00000561258 MAGEB6P1A0A0J9YX57 407 aa9.97□□□□□ -0.81
VPS13C-210ENST00000561258 FSHRP23945 695 aa9.97□□□□□ -0.81
VPS13C-210ENST00000561258 LINC00528Q8N1L1 170 aa9.97□□□□□ -0.81
VPS13C-210ENST00000561258 MEIOBQ8N635 442 aa9.97□□□□□ -0.81
VPS13C-210ENST00000561258 HELBQ8NG08 1087 aaPredicted RBP9.97□□□□□ -0.81
VPS13C-210ENST00000561258 VSIG8P0DPA2 414 aa9.96□□□□□ -0.82
VPS13C-210ENST00000561258 CLK2P49760 499 aaKnown RBP9.96□□□□□ -0.82
VPS13C-210ENST00000561258 VASH1Q7L8A9 365 aaPredicted RBP9.96□□□□□ -0.82
VPS13C-210ENST00000561258 SH3BP5LQ7L8J4 393 aa9.96□□□□□ -0.82
VPS13C-210ENST00000561258 POLR3EQ9NVU0 708 aa9.96□□□□□ -0.82
VPS13C-210ENST00000561258 NBPF14Q5TI25 921 aa9.95□□□□□ -0.82
VPS13C-210ENST00000561258 CARD14Q9BXL6 1004 aa9.95□□□□□ -0.82
VPS13C-210ENST00000561258 PPFIA3O75145 1194 aa9.94□□□□□ -0.82
VPS13C-210ENST00000561258 UPP2O95045 317 aa9.94□□□□□ -0.82
VPS13C-210ENST00000561258 DNMT3LQ9UJW3 386 aa9.94□□□□□ -0.82
VPS13C-210ENST00000561258 MAP4K5Q9Y4K4 846 aa9.94□□□□□ -0.82
VPS13C-210ENST00000561258 SOS2Q07890 1332 aaPredicted RBP9.93□□□□□ -0.82
VPS13C-210ENST00000561258 TRMT44Q8IYL2 757 aaKnown RBP9.93□□□□□ -0.82
VPS13C-210ENST00000561258 CTDSPL2Q05D32 466 aa9.92□□□□□ -0.82
VPS13C-210ENST00000561258 ERFEQ4G0M1 354 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms