RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ITSN1Q15811 1721 aa17.1■□□□□ 0.33
SNX1-211ENST00000560829 NRKQ7Z2Y5 1582 aa17.1■□□□□ 0.33
SNX1-211ENST00000560829 NME9Q86XW9 330 aa17.1■□□□□ 0.33
SNX1-211ENST00000560829 ERICH6BQ5W0A0 696 aa17.09■□□□□ 0.33
SNX1-211ENST00000560829 CCDC146Q8IYE0 955 aa17.09■□□□□ 0.33
SNX1-211ENST00000560829 TTC21BQ7Z4L5 1316 aa17.08■□□□□ 0.33
SNX1-211ENST00000560829 NWD1Q149M9 1564 aa17.08■□□□□ 0.32
SNX1-211ENST00000560829 APAF1O14727 1248 aa17.07■□□□□ 0.32
SNX1-211ENST00000560829 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
SNX1-211ENST00000560829 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
SNX1-211ENST00000560829 CDCA7LQ96GN5 454 aa17.07■□□□□ 0.32
SNX1-211ENST00000560829 COG3Q96JB2 828 aa17.07■□□□□ 0.32
SNX1-211ENST00000560829 POLKQ9UBT6 870 aa17.07■□□□□ 0.32
SNX1-211ENST00000560829 NUTM2FA1L443 756 aa17.06■□□□□ 0.32
SNX1-211ENST00000560829 ADGRL3Q9HAR2 1447 aa17.06■□□□□ 0.32
SNX1-211ENST00000560829 FMN2Q9NZ56 1722 aa17.06■□□□□ 0.32
SNX1-211ENST00000560829 IQSEC2Q5JU85 1478 aa17.06■□□□□ 0.32
SNX1-211ENST00000560829 TTC21AQ8NDW8 1320 aa17.05■□□□□ 0.32
SNX1-211ENST00000560829 OVOS2A0A0J9YW53 1432 aa17.05■□□□□ 0.32
SNX1-211ENST00000560829 OVOS2Q6IE36 1432 aa17.05■□□□□ 0.32
SNX1-211ENST00000560829 GOLGA2Q08379 1002 aa17.03■□□□□ 0.32
SNX1-211ENST00000560829 ZRANB1Q9UGI0 708 aa17.03■□□□□ 0.32
SNX1-211ENST00000560829 NALCNQ8IZF0 1738 aa17.03■□□□□ 0.32
SNX1-211ENST00000560829 CDK12Q9NYV4 1490 aaPredicted RBP17.03■□□□□ 0.32
SNX1-211ENST00000560829 DIAPH1O60610 1272 aaKnown RBP17.03■□□□□ 0.32
SNX1-211ENST00000560829 U2AF1L5P0DN76 240 aaPredicted RBP17.03■□□□□ 0.32
SNX1-211ENST00000560829 U2AF1Q01081 240 aaKnown RBP eCLIP17.03■□□□□ 0.32
SNX1-211ENST00000560829 PHF23Q9BUL5 403 aaPredicted RBP17.03■□□□□ 0.32
SNX1-211ENST00000560829 TRMT2AQ8IZ69 625 aaKnown RBP17.01■□□□□ 0.31
SNX1-211ENST00000560829 PMFBP1Q8TBY8 1022 aa17.01■□□□□ 0.31
SNX1-211ENST00000560829 USP31Q70CQ4 1352 aa17.01■□□□□ 0.31
SNX1-211ENST00000560829 SLFN5Q08AF3 891 aa17.01■□□□□ 0.31
SNX1-211ENST00000560829 DUSP27Q5VZP5 1158 aa17.01■□□□□ 0.31
SNX1-211ENST00000560829 NGDNQ8NEJ9 315 aaKnown RBP17.01■□□□□ 0.31
SNX1-211ENST00000560829 CCDC27Q2M243 656 aa17■□□□□ 0.31
SNX1-211ENST00000560829 TCP11L2Q8N4U5 519 aa17■□□□□ 0.31
SNX1-211ENST00000560829 RCAN3Q9UKA8 241 aa17■□□□□ 0.31
SNX1-211ENST00000560829 KDM4FA0A1W2PPD8 638 aa16.99■□□□□ 0.31
SNX1-211ENST00000560829 PLEKHF1Q96S99 279 aa16.99■□□□□ 0.31
SNX1-211ENST00000560829 EMILIN1Q9Y6C2 1016 aa16.99■□□□□ 0.31
SNX1-211ENST00000560829 FBLN1P23142 703 aa16.99■□□□□ 0.31
SNX1-211ENST00000560829 WWC1Q8IX03 1113 aa16.99■□□□□ 0.31
SNX1-211ENST00000560829 E9PSI1 815 aa16.97■□□□□ 0.31
SNX1-211ENST00000560829 U2SURPO15042 1029 aaKnown RBP16.97■□□□□ 0.31
SNX1-211ENST00000560829 IRX6P78412 446 aaPredicted RBP16.97■□□□□ 0.31
SNX1-211ENST00000560829 PNNQ9H307 717 aaKnown RBP16.97■□□□□ 0.31
SNX1-211ENST00000560829 FCHSD2O94868 740 aa16.96■□□□□ 0.31
SNX1-211ENST00000560829 IL13P35225 146 aa16.96■□□□□ 0.31
SNX1-211ENST00000560829 PHF8Q9UPP1 1060 aa16.96■□□□□ 0.31
SNX1-211ENST00000560829 WDR63Q8IWG1 891 aa16.95■□□□□ 0.3
SNX1-211ENST00000560829 RGPD8O14715 1765 aaPredicted RBP16.95■□□□□ 0.3
SNX1-211ENST00000560829 LRRC7Q96NW7 1537 aa16.95■□□□□ 0.3
SNX1-211ENST00000560829 PPM1GO15355 546 aaPredicted RBP16.95■□□□□ 0.3
SNX1-211ENST00000560829 RRP1P56182 461 aaKnown RBP16.95■□□□□ 0.3
SNX1-211ENST00000560829 RRS1Q15050 365 aaKnown RBP16.95■□□□□ 0.3
SNX1-211ENST00000560829 RBM33Q96EV2 1170 aaKnown RBP16.95■□□□□ 0.3
SNX1-211ENST00000560829 NCOA3Q9Y6Q9 1424 aa16.94■□□□□ 0.3
SNX1-211ENST00000560829 SPINK5Q9NQ38 1064 aaPredicted RBP16.94■□□□□ 0.3
SNX1-211ENST00000560829 LMTK3Q96Q04 1460 aa16.93■□□□□ 0.3
SNX1-211ENST00000560829 PROSER2Q86WR7 435 aaPredicted RBP16.93■□□□□ 0.3
SNX1-211ENST00000560829 RSPH6AQ9H0K4 717 aa16.93■□□□□ 0.3
SNX1-211ENST00000560829 PPP4R2Q9NY27 417 aa16.93■□□□□ 0.3
SNX1-211ENST00000560829 DMRT2Q9Y5R5 561 aa16.93■□□□□ 0.3
SNX1-211ENST00000560829 MAP2P11137 1827 aaKnown RBP16.92■□□□□ 0.3
SNX1-211ENST00000560829 MAPK8IP3Q9UPT6 1336 aa16.92■□□□□ 0.3
SNX1-211ENST00000560829 PIK3C2AO00443 1686 aa16.92■□□□□ 0.3
SNX1-211ENST00000560829 USP54Q70EL1 1684 aa16.92■□□□□ 0.3
SNX1-211ENST00000560829 RRP7AQ9Y3A4 280 aaKnown RBP16.92■□□□□ 0.3
SNX1-211ENST00000560829 C14orf37Q86TY3 774 aa16.91■□□□□ 0.3
SNX1-211ENST00000560829 C19orf44Q9H6X5 657 aa16.91■□□□□ 0.3
SNX1-211ENST00000560829 TMPOP42166 694 aaKnown RBP16.9■□□□□ 0.3
SNX1-211ENST00000560829 HSPA2P54652 639 aa16.9■□□□□ 0.3
SNX1-211ENST00000560829 NEUROD2Q15784 382 aa16.9■□□□□ 0.3
SNX1-211ENST00000560829 DCCP43146 1447 aa16.9■□□□□ 0.3
SNX1-211ENST00000560829 KIF24Q5T7B8 1368 aa16.89■□□□□ 0.29
SNX1-211ENST00000560829 ESCO1Q5FWF5 840 aa16.88■□□□□ 0.29
SNX1-211ENST00000560829 SBNO1A3KN83 1393 aa16.88■□□□□ 0.29
SNX1-211ENST00000560829 PRKAR2BP31323 418 aa16.88■□□□□ 0.29
SNX1-211ENST00000560829 MAP3K19Q56UN5 1328 aa16.88■□□□□ 0.29
SNX1-211ENST00000560829 TMEM94Q12767 1356 aa16.87■□□□□ 0.29
SNX1-211ENST00000560829 NLRP6P59044 892 aa16.87■□□□□ 0.29
SNX1-211ENST00000560829 PELP1Q8IZL8 1130 aaKnown RBP16.87■□□□□ 0.29
SNX1-211ENST00000560829 TRIM35Q9UPQ4 493 aa16.87■□□□□ 0.29
SNX1-211ENST00000560829 C1orf167Q5SNV9 1468 aa16.87■□□□□ 0.29
SNX1-211ENST00000560829 EIF4A2Q14240 407 aaKnown RBP16.86■□□□□ 0.29
SNX1-211ENST00000560829 PEAK1Q9H792 1746 aa16.86■□□□□ 0.29
SNX1-211ENST00000560829 FLT4P35916 1363 aa16.86■□□□□ 0.29
SNX1-211ENST00000560829 ABTB2Q8N961 1025 aa16.86■□□□□ 0.29
SNX1-211ENST00000560829 IL16Q14005 1332 aa16.86■□□□□ 0.29
SNX1-211ENST00000560829 NEFMP07197 916 aa16.85■□□□□ 0.29
SNX1-211ENST00000560829 PSME1Q06323 249 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 ORAI2Q96SN7 254 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 MARF1Q9Y4F3 1742 aaKnown RBP16.84■□□□□ 0.29
SNX1-211ENST00000560829 STRCP1A6NGW2 1772 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 HMOX1P09601 288 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 RIPK4P57078 832 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 HSP90AB2PQ58FF8 381 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 MYH16Q9H6N6 1097 aa16.84■□□□□ 0.29
SNX1-211ENST00000560829 PAK3O75914 559 aaPredicted RBP16.83■□□□□ 0.28
SNX1-211ENST00000560829 NFE2L2Q16236 605 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms