RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 CABP2Q9NPB3 220 aa8.79□□□□□ -1
SPG11-221ENST00000560299 KNSTRNQ9Y448 316 aa8.79□□□□□ -1
SPG11-221ENST00000560299 SBNO1A3KN83 1393 aa8.78□□□□□ -1
SPG11-221ENST00000560299 PLEKHG3A1L390 1219 aa8.78□□□□□ -1
SPG11-221ENST00000560299 PITPNM1O00562 1244 aa8.78□□□□□ -1
SPG11-221ENST00000560299 PIP4K2BP78356 416 aa8.78□□□□□ -1
SPG11-221ENST00000560299 RBM33Q96EV2 1170 aaKnown RBP8.78□□□□□ -1
SPG11-221ENST00000560299 TERF2IPQ9NYB0 399 aa8.78□□□□□ -1
SPG11-221ENST00000560299 CCDC61Q9Y6R9 512 aa8.78□□□□□ -1
SPG11-221ENST00000560299 POLR3AO14802 1390 aaPredicted RBP8.77□□□□□ -1.01
SPG11-221ENST00000560299 HDGFL2Q7Z4V5 671 aaPredicted RBP8.77□□□□□ -1.01
SPG11-221ENST00000560299 MIER1Q8N108 512 aa8.77□□□□□ -1.01
SPG11-221ENST00000560299 SHPRHQ149N8 1683 aa8.77□□□□□ -1.01
SPG11-221ENST00000560299 ITSN1Q15811 1721 aa8.77□□□□□ -1.01
SPG11-221ENST00000560299 ATP7BP35670 1465 aa8.77□□□□□ -1.01
SPG11-221ENST00000560299 PXDNQ92626 1479 aa8.77□□□□□ -1.01
SPG11-221ENST00000560299 KTN1Q86UP2 1357 aaKnown RBP8.76□□□□□ -1.01
SPG11-221ENST00000560299 NUDT16Q96DE0 195 aaKnown RBP8.76□□□□□ -1.01
SPG11-221ENST00000560299 SLC12A5Q9H2X9 1139 aa8.76□□□□□ -1.01
SPG11-221ENST00000560299 PHLPP1O60346 1717 aa8.76□□□□□ -1.01
SPG11-221ENST00000560299 USP32Q8NFA0 1604 aa8.76□□□□□ -1.01
SPG11-221ENST00000560299 COL22A1Q8NFW1 1626 aaPredicted RBP8.76□□□□□ -1.01
SPG11-221ENST00000560299 PSME1Q06323 249 aa8.75□□□□□ -1.01
SPG11-221ENST00000560299 RALBP1Q15311 655 aa8.75□□□□□ -1.01
SPG11-221ENST00000560299 ZNF692Q9BU19 519 aaPredicted RBP8.75□□□□□ -1.01
SPG11-221ENST00000560299 PHF8Q9UPP1 1060 aa8.75□□□□□ -1.01
SPG11-221ENST00000560299 TOPAZ1Q8N9V7 1692 aa8.75□□□□□ -1.01
SPG11-221ENST00000560299 ANKRD36BQ8N2N9 1353 aa8.74□□□□□ -1.01
SPG11-221ENST00000560299 CCER2I3L3R5 266 aa8.74□□□□□ -1.01
SPG11-221ENST00000560299 PER1O15534 1290 aaPredicted RBP8.74□□□□□ -1.01
SPG11-221ENST00000560299 ESCO1Q5FWF5 840 aa8.74□□□□□ -1.01
SPG11-221ENST00000560299 ORAI2Q96SN7 254 aa8.74□□□□□ -1.01
SPG11-221ENST00000560299 PRKRIP1Q9H875 184 aaPredicted RBP8.74□□□□□ -1.01
SPG11-221ENST00000560299 CABP1Q9NZU7 370 aa8.74□□□□□ -1.01
SPG11-221ENST00000560299 ARHGEF10O15013 1369 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 MYOM1P52179 1685 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 EVX2Q03828 476 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 CGNL1Q0VF96 1302 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 SPATA31A3Q5VYP0 1347 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 PRR36Q9H6K5 1346 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 PNPLA6Q8IY17 1366 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 NPC1L1Q9UHC9 1359 aa8.73□□□□□ -1.01
SPG11-221ENST00000560299 PPIP5K1Q6PFW1 1433 aa8.72□□□□□ -1.01
SPG11-221ENST00000560299 CPSF1Q10570 1443 aaKnown RBP8.71□□□□□ -1.01
SPG11-221ENST00000560299 SSH2Q76I76 1423 aa8.71□□□□□ -1.01
SPG11-221ENST00000560299 MED1Q15648 1581 aaPredicted RBP8.71□□□□□ -1.02
SPG11-221ENST00000560299 NUTM2FA1L443 756 aa8.71□□□□□ -1.02
SPG11-221ENST00000560299 FOXO3O43524 673 aa8.71□□□□□ -1.02
SPG11-221ENST00000560299 CNGB1Q14028 1251 aaPredicted RBP8.71□□□□□ -1.02
SPG11-221ENST00000560299 CC2D1BQ5T0F9 858 aaKnown RBP8.71□□□□□ -1.02
SPG11-221ENST00000560299 NGDNQ8NEJ9 315 aaKnown RBP8.71□□□□□ -1.02
SPG11-221ENST00000560299 CARD14Q9BXL6 1004 aa8.71□□□□□ -1.02
SPG11-221ENST00000560299 NSD2O96028 1365 aa8.71□□□□□ -1.02
SPG11-221ENST00000560299 TNS3Q68CZ2 1445 aa8.71□□□□□ -1.02
SPG11-221ENST00000560299 NSD3Q9BZ95 1437 aa8.71□□□□□ -1.02
SPG11-221ENST00000560299 AMER1Q5JTC6 1135 aaPredicted RBP8.7□□□□□ -1.02
SPG11-221ENST00000560299 KRT28Q7Z3Y7 464 aa8.7□□□□□ -1.02
SPG11-221ENST00000560299 MYBBP1AQ9BQG0 1328 aaKnown RBP8.7□□□□□ -1.02
SPG11-221ENST00000560299 A0A1W2PP64 1363 aa8.7□□□□□ -1.02
SPG11-221ENST00000560299 TRPM3Q9HCF6 1732 aaPredicted RBP8.69□□□□□ -1.02
SPG11-221ENST00000560299 RGPD8O14715 1765 aaPredicted RBP8.69□□□□□ -1.02
SPG11-221ENST00000560299 ACEP12821 1306 aa8.69□□□□□ -1.02
SPG11-221ENST00000560299 ALS2Q96Q42 1657 aa8.69□□□□□ -1.02
SPG11-221ENST00000560299 MORC1Q86VD1 984 aa8.68□□□□□ -1.02
SPG11-221ENST00000560299 NLRP13Q86W25 1043 aa8.68□□□□□ -1.02
SPG11-221ENST00000560299 FNBP4Q8N3X1 1017 aaPredicted RBP8.68□□□□□ -1.02
SPG11-221ENST00000560299 PMFBP1Q8TBY8 1022 aa8.68□□□□□ -1.02
SPG11-221ENST00000560299 ATF5Q9Y2D1 282 aaPredicted RBP8.68□□□□□ -1.02
SPG11-221ENST00000560299 TTC21AQ8NDW8 1320 aa8.68□□□□□ -1.02
SPG11-221ENST00000560299 PARD3Q8TEW0 1356 aa8.68□□□□□ -1.02
SPG11-221ENST00000560299 USP6P35125 1406 aa8.68□□□□□ -1.02
SPG11-221ENST00000560299 EDC4Q6P2E9 1401 aaKnown RBP8.68□□□□□ -1.02
SPG11-221ENST00000560299 MRS2Q9HD23 443 aa8.67□□□□□ -1.02
SPG11-221ENST00000560299 CD163L1Q9NR16 1453 aa8.66□□□□□ -1.02
SPG11-221ENST00000560299 USP31Q70CQ4 1352 aa8.66□□□□□ -1.02
SPG11-221ENST00000560299 ZNF772Q68DY9 489 aaPredicted RBP8.66□□□□□ -1.02
SPG11-221ENST00000560299 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.66□□□□□ -1.02
SPG11-221ENST00000560299 AKAP12Q02952 1782 aa8.66□□□□□ -1.02
SPG11-221ENST00000560299 USP54Q70EL1 1684 aa8.65□□□□□ -1.02
SPG11-221ENST00000560299 CPDO75976 1380 aa8.65□□□□□ -1.02
SPG11-221ENST00000560299 USP19O94966 1318 aa8.65□□□□□ -1.02
SPG11-221ENST00000560299 FYB1O15117 783 aa8.65□□□□□ -1.02
SPG11-221ENST00000560299 COG3Q96JB2 828 aa8.65□□□□□ -1.02
SPG11-221ENST00000560299 LRP6O75581 1613 aa8.65□□□□□ -1.03
SPG11-221ENST00000560299 ABCC6O95255 1503 aa8.64□□□□□ -1.03
SPG11-221ENST00000560299 CDK12Q9NYV4 1490 aaPredicted RBP8.64□□□□□ -1.03
SPG11-221ENST00000560299 TTC21BQ7Z4L5 1316 aa8.64□□□□□ -1.03
SPG11-221ENST00000560299 MON2Q7Z3U7 1717 aa8.64□□□□□ -1.03
SPG11-221ENST00000560299 PPP2R1AP30153 589 aa8.64□□□□□ -1.03
SPG11-221ENST00000560299 CFAP53Q96M91 514 aa8.64□□□□□ -1.03
SPG11-221ENST00000560299 GGNBP2Q9H3C7 697 aa8.64□□□□□ -1.03
SPG11-221ENST00000560299 MARF1Q9Y4F3 1742 aaKnown RBP8.63□□□□□ -1.03
SPG11-221ENST00000560299 CRYBG1Q9Y4K1 1723 aa8.63□□□□□ -1.03
SPG11-221ENST00000560299 PAK3O75914 559 aaPredicted RBP8.63□□□□□ -1.03
SPG11-221ENST00000560299 DDX17Q92841 729 aaKnown RBP8.63□□□□□ -1.03
SPG11-221ENST00000560299 NRKQ7Z2Y5 1582 aa8.63□□□□□ -1.03
SPG11-221ENST00000560299 SLIT2O94813 1529 aa8.63□□□□□ -1.03
SPG11-221ENST00000560299 KIF20BQ96Q89 1820 aa8.63□□□□□ -1.03
SPG11-221ENST00000560299 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.63□□□□□ -1.03
SPG11-221ENST00000560299 NWD2Q9ULI1 1742 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms