RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 JCADQ9P266 1359 aa30.29■■■□□ 2.44
SNX1-210ENST00000560260 LRRC59Q96AG4 307 aaKnown RBP30.29■■■□□ 2.44
SNX1-210ENST00000560260 ANKRD36BQ8N2N9 1353 aa30.28■■■□□ 2.44
SNX1-210ENST00000560260 COL22A1Q8NFW1 1626 aaPredicted RBP30.28■■■□□ 2.44
SNX1-210ENST00000560260 KTN1Q86UP2 1357 aaKnown RBP30.28■■■□□ 2.44
SNX1-210ENST00000560260 HDGFL2Q7Z4V5 671 aaPredicted RBP30.24■■■□□ 2.43
SNX1-210ENST00000560260 ZNF692Q9BU19 519 aaPredicted RBP30.24■■■□□ 2.43
SNX1-210ENST00000560260 PIK3C2AO00443 1686 aa30.24■■■□□ 2.43
SNX1-210ENST00000560260 TERF2IPQ9NYB0 399 aa30.23■■■□□ 2.43
SNX1-210ENST00000560260 BRD4O60885 1362 aaPredicted RBP30.23■■■□□ 2.43
SNX1-210ENST00000560260 PAK3O75914 559 aaPredicted RBP30.22■■■□□ 2.43
SNX1-210ENST00000560260 TTC21BQ7Z4L5 1316 aa30.22■■■□□ 2.43
SNX1-210ENST00000560260 EDC4Q6P2E9 1401 aaKnown RBP30.22■■■□□ 2.43
SNX1-210ENST00000560260 ABCA3Q99758 1704 aa30.21■■■□□ 2.43
SNX1-210ENST00000560260 CRYBG1Q9Y4K1 1723 aa30.21■■■□□ 2.43
SNX1-210ENST00000560260 MED1Q15648 1581 aaPredicted RBP30.21■■■□□ 2.43
SNX1-210ENST00000560260 ARHGEF10O15013 1369 aa30.19■■■□□ 2.42
SNX1-210ENST00000560260 LRP6O75581 1613 aa30.19■■■□□ 2.42
SNX1-210ENST00000560260 MARF1Q9Y4F3 1742 aaKnown RBP30.19■■■□□ 2.42
SNX1-210ENST00000560260 LMOD2Q6P5Q4 547 aa30.19■■■□□ 2.42
SNX1-210ENST00000560260 CARD14Q9BXL6 1004 aa30.17■■■□□ 2.42
SNX1-210ENST00000560260 NSD3Q9BZ95 1437 aa30.15■■■□□ 2.42
SNX1-210ENST00000560260 NUTM2GQ5VZR2 741 aa30.15■■■□□ 2.42
SNX1-210ENST00000560260 PHRF1Q9P1Y6 1649 aaKnown RBP30.14■■■□□ 2.42
SNX1-210ENST00000560260 TTC21AQ8NDW8 1320 aa30.14■■■□□ 2.42
SNX1-210ENST00000560260 SUGP2Q8IX01 1082 aaKnown RBP eCLIP30.14■■■□□ 2.42
SNX1-210ENST00000560260 USP54Q70EL1 1684 aa30.13■■■□□ 2.41
SNX1-210ENST00000560260 SPATA31A6Q5VVP1 1343 aa30.13■■■□□ 2.41
SNX1-210ENST00000560260 PANK3Q9H999 370 aa30.13■■■□□ 2.41
SNX1-210ENST00000560260 NME9Q86XW9 330 aa30.12■■■□□ 2.41
SNX1-210ENST00000560260 ABTB2Q8N961 1025 aa30.12■■■□□ 2.41
SNX1-210ENST00000560260 CABLES1Q8TDN4 633 aa30.12■■■□□ 2.41
SNX1-210ENST00000560260 PLEKHG5O94827 1062 aa30.11■■■□□ 2.41
SNX1-210ENST00000560260 ZRANB1Q9UGI0 708 aa30.11■■■□□ 2.41
SNX1-210ENST00000560260 KIF20BQ96Q89 1820 aa30.1■■■□□ 2.41
SNX1-210ENST00000560260 USP19O94966 1318 aa30.09■■■□□ 2.41
SNX1-210ENST00000560260 SLIT3O75094 1523 aa30.08■■■□□ 2.41
SNX1-210ENST00000560260 NUTM2BA6NNL0 878 aaPredicted RBP30.08■■■□□ 2.41
SNX1-210ENST00000560260 NUTM2EB1AL46 878 aaPredicted RBP30.08■■■□□ 2.41
SNX1-210ENST00000560260 NUTM2AQ8IVF1 878 aaPredicted RBP30.08■■■□□ 2.41
SNX1-210ENST00000560260 OVOS2A0A0J9YW53 1432 aa30.07■■■□□ 2.4
SNX1-210ENST00000560260 OVOS2Q6IE36 1432 aa30.07■■■□□ 2.4
SNX1-210ENST00000560260 USP31Q70CQ4 1352 aa30.07■■■□□ 2.4
SNX1-210ENST00000560260 NLRP6P59044 892 aa30.04■■■□□ 2.4
SNX1-210ENST00000560260 NLRP13Q86W25 1043 aa30.02■■■□□ 2.4
SNX1-210ENST00000560260 FYB1O15117 783 aa30.01■■■□□ 2.4
SNX1-210ENST00000560260 NFAT5O94916 1531 aa30■■■□□ 2.39
SNX1-210ENST00000560260 ADAMTS2O95450 1211 aa29.98■■■□□ 2.39
SNX1-210ENST00000560260 GGNBP2Q9H3C7 697 aa29.98■■■□□ 2.39
SNX1-210ENST00000560260 PER1O15534 1290 aaPredicted RBP29.97■■■□□ 2.39
SNX1-210ENST00000560260 ANKRD26Q9UPS8 1709 aa29.97■■■□□ 2.39
SNX1-210ENST00000560260 ZNF316A6NFI3 1004 aaPredicted RBP29.96■■■□□ 2.39
SNX1-210ENST00000560260 HAP1P54257 671 aaPredicted RBP29.96■■■□□ 2.39
SNX1-210ENST00000560260 CGNL1Q0VF96 1302 aa29.95■■■□□ 2.39
SNX1-210ENST00000560260 GCP02774 474 aa29.95■■■□□ 2.38
SNX1-210ENST00000560260 AMER1Q5JTC6 1135 aaPredicted RBP29.93■■■□□ 2.38
SNX1-210ENST00000560260 KIAA0232Q92628 1395 aa29.92■■■□□ 2.38
SNX1-210ENST00000560260 COG3Q96JB2 828 aa29.92■■■□□ 2.38
SNX1-210ENST00000560260 SOX12O15370 315 aa29.91■■■□□ 2.38
SNX1-210ENST00000560260 MEX3CQ5U5Q3 659 aaKnown RBP29.91■■■□□ 2.38
SNX1-210ENST00000560260 KNSTRNQ9Y448 316 aa29.91■■■□□ 2.38
SNX1-210ENST00000560260 PLCH1Q4KWH8 1693 aa29.9■■■□□ 2.38
SNX1-210ENST00000560260 ZC3H6P61129 1189 aaKnown RBP29.9■■■□□ 2.38
SNX1-210ENST00000560260 CPDO75976 1380 aa29.89■■■□□ 2.38
SNX1-210ENST00000560260 C8orf37Q96NL8 207 aa29.89■■■□□ 2.38
SNX1-210ENST00000560260 NSD2O96028 1365 aa29.88■■■□□ 2.37
SNX1-210ENST00000560260 COL14A1Q05707 1796 aaKnown RBP29.88■■■□□ 2.37
SNX1-210ENST00000560260 DDX10Q13206 875 aaKnown RBP29.88■■■□□ 2.37
SNX1-210ENST00000560260 LMO7Q8WWI1 1683 aa29.87■■■□□ 2.37
SNX1-210ENST00000560260 LTN1O94822 1766 aa29.86■■■□□ 2.37
SNX1-210ENST00000560260 FAM83GA6ND36 823 aa29.86■■■□□ 2.37
SNX1-210ENST00000560260 KCNH5Q8NCM2 988 aa29.86■■■□□ 2.37
SNX1-210ENST00000560260 SLIT2O94813 1529 aa29.86■■■□□ 2.37
SNX1-210ENST00000560260 COL18A1P39060 1754 aa29.85■■■□□ 2.37
SNX1-210ENST00000560260 FBLN1P23142 703 aa29.85■■■□□ 2.37
SNX1-210ENST00000560260 CHRNA2Q15822 529 aa29.85■■■□□ 2.37
SNX1-210ENST00000560260 NRAPQ86VF7 1730 aa29.84■■■□□ 2.37
SNX1-210ENST00000560260 ARHGEF25Q86VW2 580 aa29.83■■■□□ 2.37
SNX1-210ENST00000560260 PRDM11Q9NQV5 511 aa29.83■■■□□ 2.37
SNX1-210ENST00000560260 NPC1L1Q9UHC9 1359 aa29.83■■■□□ 2.37
SNX1-210ENST00000560260 AFF2P51816 1311 aa29.82■■■□□ 2.37
SNX1-210ENST00000560260 NWD2Q9ULI1 1742 aa29.82■■■□□ 2.36
SNX1-210ENST00000560260 NGLY1Q96IV0 654 aa29.81■■■□□ 2.36
SNX1-210ENST00000560260 CAMTA1Q9Y6Y1 1673 aa29.8■■■□□ 2.36
SNX1-210ENST00000560260 BCL9LQ86UU0 1499 aa29.79■■■□□ 2.36
SNX1-210ENST00000560260 ZBTB7CA1YPR0 619 aa29.79■■■□□ 2.36
SNX1-210ENST00000560260 CC2D1BQ5T0F9 858 aaKnown RBP29.79■■■□□ 2.36
SNX1-210ENST00000560260 FNBP4Q8N3X1 1017 aaPredicted RBP29.79■■■□□ 2.36
SNX1-210ENST00000560260 RGS17Q9UGC6 210 aaPredicted RBP29.79■■■□□ 2.36
SNX1-210ENST00000560260 PEAK1Q9H792 1746 aa29.79■■■□□ 2.36
SNX1-210ENST00000560260 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.78■■■□□ 2.36
SNX1-210ENST00000560260 AATKQ6ZMQ8 1374 aa29.78■■■□□ 2.36
SNX1-210ENST00000560260 MAP3K19Q56UN5 1328 aa29.77■■■□□ 2.36
SNX1-210ENST00000560260 ABCC6O95255 1503 aa29.77■■■□□ 2.36
SNX1-210ENST00000560260 RGPD5Q99666 1765 aa29.76■■■□□ 2.36
SNX1-210ENST00000560260 RRS1Q15050 365 aaKnown RBP29.76■■■□□ 2.36
SNX1-210ENST00000560260 CNGB1Q14028 1251 aaPredicted RBP29.75■■■□□ 2.35
SNX1-210ENST00000560260 TNNT2P45379 298 aaPredicted RBP29.74■■■□□ 2.35
SNX1-210ENST00000560260 MORC1Q86VD1 984 aa29.74■■■□□ 2.35
SNX1-210ENST00000560260 BTG4Q9NY30 223 aa29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms